Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002280

Physical Location & Seq

Genomic Coordinates Reverse (-)

34406696 .. 34419645

Gene Structure 12950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG192500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAAGTACCTCATCGTCATCATGCTGGCAGTGCTAGTAGCTGTAGGCAATCTTTGGGGGTTTGATGTGGGGGTTGATGGGGCTGGGGAGTGTGGAAGCAACCCGGAAGTTGTGGTATACAAGCTTGCTTCATGTGGACCAGCAGCACAAGATGGGAGCGTCGCGGTTTCTCCCAAGTGTTGCTCGTTGGTGAAACGCGTCGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAACTTCAGAGTCGTGGCCTCAACCCAGCAATCGCAGTCACCATACCTAAACGTTGTAAGGATCCCAGACGTCCCAAGGGTTACAAGTGTGGAGAGATCGATTTAGTAGCTGAGATAAATTCTGAAAGTGGATCTTATTTGGCACAACACTTGTGTATGATTTACTGCCATAAGATCCCAGATTTGCAAATCTCAATGAAGAACGATGGAGGAATGATCCGAGATTTGCAAAATCTCAATGAAGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

162

Amino Acids

17.55

Weight (kDa)

8.31

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	34 - 104	2e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	38 - 109	2.2e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002280)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G242600_v2.0.a1 Prupe.2G242700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022311 RchiOBHm_Chr5g0022411 RchiOBHm_Chr5g0069381 RchiOBHm_Chr6g0273821 RchiOBHm_Chr6g0273841
rosa_laevigata	RLG00000032572 RLG00000032658 RLG00000033466
rosa_multiflora	Rmu_sc0000178.1_g000009 Rmu_sc0002658.1_g000011 Rmu_sc0005639.1_g000007 Rmu_sc0021631.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056610 Rroxscaffold_1G00056650 Rroxscaffold_1G00056670 Rroxscaffold_3G00231410 Rroxscaffold_7G00192730
rosa_rugosa	Rorug04G0081100 Rorug04G0081200 Rorug05G0073400 Rorug05G0073400 Rorug06G0097900
rosa_samantha	Rh4DG183900 Rh5AG160400 Rh5BG159600 Rh5BG473000 Rh5CG173700 Rh5CG173900 Rh5CG259600 Rh5CG495600 Rh5DG160000 Rh5DG160200 Rh6AG192400 Rh6AG192500 Rh6BG196800 Rh6CG195700 Rh6CG195800 Rh6DG187800 Rh6DG188000
rosa_wichuraiana	Rw0G002530 Rw5G042380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccI	GTMKAC	2 cut(s)	117, 201
AccII	CGCG	2 cut(s)	164, 198
AciI	CCGC	1 cut(s)	164
AclI	AACGTT	1 cut(s)	289
AclWI	GGATC	5 cut(s)	293, 306, 376, 406, 448
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	196
AluBI	AGCT	3 cut(s)	41, 124, 347
AluI	AGCT	3 cut(s)	41, 124, 347
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	5 cut(s)	293, 306, 376, 406, 448
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	202, 268
AvaII	GGWCC	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	3 cut(s)	71, 146, 437
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	2 cut(s)	83, 262
Bsh1236I	CGCG	2 cut(s)	164, 198
BshFI	GGCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	298, 333, 368, 411, 453
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	2 cut(s)	164, 198
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	5 cut(s)	293, 306, 376, 406, 448
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	5 cut(s)	298, 333, 368, 411, 453
BssNAI	GTATAC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	312
Bst1107I	GTATAC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	27, 126
BstDEI	CTNAG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	164, 198
BstKTI	GATC	5 cut(s)	301, 336, 371, 414, 456
BstMBI	GATC	5 cut(s)	298, 333, 368, 411, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	2 cut(s)	164, 198
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	3 cut(s)	298, 368, 411
BstYI	RGATCY	3 cut(s)	298, 368, 411
BstZ17I	GTATAC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	27, 126
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	336
CseI	GACGC	2 cut(s)	148, 187
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	22, 132
CviJI	RGCY	5 cut(s)	41, 83, 124, 255, 347
CviKI_1	RGCY	5 cut(s)	41, 83, 124, 255, 347
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	5 cut(s)	300, 335, 370, 413, 455
DpnII	GATC	5 cut(s)	298, 333, 368, 411, 453
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	25, 135
FaiI	YATR	6 cut(s)	23, 118, 133, 281, 395, 408
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	21, 131
FblI	GTMKAC	2 cut(s)	117, 201
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	2 cut(s)	87, 266
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	148, 187
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	25, 135
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	202, 268
Hpy166II	GTNNAC	3 cut(s)	118, 137, 202
Hpy188I	TCNGA	3 cut(s)	246, 361, 458
Hpy8I	GTNNAC	3 cut(s)	118, 137, 202
Hpy99I	CGWCG	2 cut(s)	164, 203
HpyCH4IV	ACGT	2 cut(s)	289, 307
HpyCH4V	TGCA	2 cut(s)	424, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	289, 307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	25, 135
Kzo9I	GATC	5 cut(s)	298, 333, 368, 411, 453
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	11, 69, 117, 153, 276, 316, 429
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	289, 307
MaeIII	GTNAC	2 cut(s)	274, 317
MalI	GATC	5 cut(s)	300, 335, 370, 413, 455
MboI	GATC	5 cut(s)	298, 333, 368, 411, 453
MboII	GAAGA	1 cut(s)	448
MflI	RGATCY	3 cut(s)	298, 368, 411
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	355
MluI	ACGCGT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	20, 266, 440
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	2 cut(s)	164, 198
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	298, 333, 368, 411, 453
NlaIII	CATG	2 cut(s)	25, 135
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	83, 262
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	3 cut(s)	298, 368, 411
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	5 cut(s)	298, 333, 368, 411, 453
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	12, 43, 126, 286, 292, 310, 349
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	2 cut(s)	292, 310
TaqI	TCGA	2 cut(s)	201, 336
TasI	AATT	1 cut(s)	355
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	17, 120, 449
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	117, 201
XspI	CTAG	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.