Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26154909 .. 26155782

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGAGGAGGCTTAATATTGAGGTACATGTGGATGGTGGGTTTGTTTGCAATTGTAGGCAATAATTGGGGGTTCGAAATTGAGGGGGTGGAGGGGGATGGGGAGTGCGGGCAGCTGGACCCGGAGGTGCTTATCTACAAGCTAGCATCTTGTGCACCCTCCGGACAGGATGAGAACGTGGAGGTTCCTCCCAAGTGCTGTGGTCTGATACAGAAGGTCCGCACAAGCTGCCTTTGTGCCATCATCCTTTCTAAAGAAGCCAAGAGCCTTGGGATCAACCCCGTAGTTGCCGCCACCATTCCTAAACGCTGCAAAATTGCTGGACGTCCTAAGGGTTACAAGTGCGGAGCTTATGTGGTGCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

123

Amino Acids

12.98

Weight (kDa)

8.11

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002280)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G242600_v2.0.a1 Prupe.2G242700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022311 RchiOBHm_Chr5g0022411 RchiOBHm_Chr5g0069381 RchiOBHm_Chr6g0273821 RchiOBHm_Chr6g0273841
rosa_laevigata	RLG00000032572 RLG00000032658 RLG00000033466
rosa_multiflora	Rmu_sc0000178.1_g000009 Rmu_sc0002658.1_g000011 Rmu_sc0005639.1_g000007 Rmu_sc0021631.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056610 Rroxscaffold_1G00056650 Rroxscaffold_1G00056670 Rroxscaffold_3G00231410 Rroxscaffold_7G00192730
rosa_rugosa	Rorug04G0081100 Rorug04G0081200 Rorug05G0073400 Rorug05G0073400 Rorug06G0097900
rosa_samantha	Rh4DG183900 Rh5AG160400 Rh5BG159600 Rh5BG473000 Rh5CG173700 Rh5CG173900 Rh5CG259600 Rh5CG495600 Rh5DG160000 Rh5DG160200 Rh6AG192400 Rh6AG192500 Rh6BG196800 Rh6CG195700 Rh6CG195800 Rh6DG187800 Rh6DG188000
rosa_wichuraiana	Rw0G002530 Rw5G042380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	4 cut(s)	108, 220, 291, 345
AclWI	GGATC	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	27
AluBI	AGCT	4 cut(s)	115, 142, 228, 350
AluI	AGCT	4 cut(s)	115, 142, 228, 350
Alw21I	GWGCWC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	281
Aor13HI	TCCGGA	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	112, 228, 309
AspS9I	GGNCC	2 cut(s)	118, 217
AsuC2I	CCSGG	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	118, 217
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	124, 215, 296
BccI	CCATC	3 cut(s)	28, 92, 248
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	4 cut(s)	113, 229, 291, 310
BlsI	GCNGC	4 cut(s)	114, 230, 292, 311
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	118, 217
BmgT120I	GGNCC	2 cut(s)	118, 217
BmiI	GGNNCC	2 cut(s)	120, 186
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	155
BmtI	GCTAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse21I	CCTNAGG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	4 cut(s)	39, 103, 175, 243
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	124, 215, 296
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	122, 162
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	4 cut(s)	108, 220, 291, 345
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	120, 186
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	152, 228
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	110, 144, 363
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	4 cut(s)	39, 103, 175, 243
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 228
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	124, 215, 296
Bsu36I	CCTNAGG	1 cut(s)	330
BtsCI	GGATG	4 cut(s)	39, 103, 175, 243
Cac8I	GCNNGC	3 cut(s)	110, 144, 363
Cfr13I	GGNCC	2 cut(s)	118, 217
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	28, 366
CviJI	RGCY	7 cut(s)	12, 115, 142, 228, 260, 267, 350
CviKI_1	RGCY	7 cut(s)	12, 115, 142, 228, 260, 267, 350
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	118, 217
Eco81I	CCTNAGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	31, 369
FaiI	YATR	3 cut(s)	29, 354, 367
FatI	CATG	2 cut(s)	27, 365
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	113, 229, 291, 310
FokI	GGATG	4 cut(s)	46, 110, 182, 230
Fsp4HI	GCNGC	4 cut(s)	113, 229, 291, 310
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	4 cut(s)	113, 229, 291, 310
HapII	CCGG	2 cut(s)	122, 162
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	31, 369
HpaII	CCGG	2 cut(s)	122, 162
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	177, 325
HpyCH4V	TGCA	4 cut(s)	50, 155, 312, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 228
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	177, 325
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	31, 369
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	5 cut(s)	101, 135, 152, 175, 306
Lsp1109I	GCAGC	3 cut(s)	124, 215, 296
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	177, 325
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	51, 64, 78, 315
MnlI	CCTC	7 cut(s)	15, 76, 85, 118, 169, 175, 198
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	2 cut(s)	122, 162
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	152, 228
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	273
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	31, 369
NlaIV	GGNNCC	2 cut(s)	120, 186
NspI	RCATGY	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	75
PciI	ACATGT	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	114, 230, 292, 311
PscI	ACATGT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	120, 186
PspPI	GGNCC	2 cut(s)	118, 217
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	4 cut(s)	113, 229, 291, 310
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	2 cut(s)	118, 217
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	2 cut(s)	118, 217
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	51, 64, 78, 315
SsiI	CCGC	4 cut(s)	108, 220, 291, 345
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	268
TaiI	ACGT	2 cut(s)	180, 328
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	51, 64, 78, 315
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	3 cut(s)	112, 228, 309
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	118, 217
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.