Rroxscaffold_1G00056650

Protease inhibitor seed storage lipid transfer family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002280
Physical Location & Seq
Forward (+)
78473936 .. 78474543
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056650.1

Sequence Viewer

Length: 309 bp
ATGTATGCAACCAGTAATATCATCATCCTTAGAATCAGAAGTGATCGAGAGTGTGGAAGCAACCCAGAGGTTGTGGTATACAAGCTTGCTTCATGTGGACCAGCAGCACAAGATGGGAGCGTCGCGGTTTCTCCCAAGTGTTGCTCGTTGGTGAAACGCGTCGACAAGCGTTGTCTTTGTGCCATTGTTCTCTCTAAAGAACTTCAGAGTCGTGGCCTCAACCCAGCAATCGCAATCACCATACCTAAACGTTGTAAGGATCCCAGACGTCCAAAGGGTTACAAGTGCGGAGCTTGTACGGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

102

Amino Acids

11.01

Weight (kDa)

9.53

Isoelectric Point (pI)

73.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 17 - 92 2.3e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 25 - 96 5.2e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 78, 162
AccII CGCG 2 cut(s) 125, 159
AciI CCGC 2 cut(s) 125, 288
AclI AACGTT 1 cut(s) 250
AclWI GGATC 2 cut(s) 254, 267
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 157
AluBI AGCT 2 cut(s) 85, 293
AluI AGCT 2 cut(s) 85, 293
AlwI GGATC 2 cut(s) 254, 267
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 163, 229
AvaII GGWCC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 107
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 261, 303
BsaHI GRCGYC 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 2 cut(s) 125, 159
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 301
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 43, 259
BspACI CCGC 2 cut(s) 125, 288
BspANI GGCC 1 cut(s) 216
BspFNI CGCG 2 cut(s) 125, 159
BspLI GGNNCC 2 cut(s) 261, 303
BspPI GGATC 2 cut(s) 254, 267
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 12
BssMI GATC 2 cut(s) 43, 259
BssNAI GTATAC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 268
Bst1107I GTATAC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 2 cut(s) 125, 159
BstKTI GATC 2 cut(s) 46, 262
BstMBI GATC 2 cut(s) 43, 259
BstUI CGCG 2 cut(s) 125, 159
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 2 cut(s) 109, 148
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 93
CviJI RGCY 3 cut(s) 85, 216, 293
CviKI_1 RGCY 3 cut(s) 85, 216, 293
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 45, 261
DpnII GATC 2 cut(s) 43, 259
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 188
FaeI CATG 1 cut(s) 96
FaiI YATR 4 cut(s) 6, 79, 94, 242
FatI CATG 1 cut(s) 92
FblI GTMKAC 2 cut(s) 78, 162
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 216
HgaI GACGC 2 cut(s) 109, 148
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 1 cut(s) 96
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 33, 208
HphI GGTGA 2 cut(s) 163, 229
Hpy166II GTNNAC 3 cut(s) 79, 98, 163
Hpy188I TCNGA 2 cut(s) 38, 207
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 3 cut(s) 79, 98, 163
Hpy99I CGWCG 2 cut(s) 125, 164
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 250, 268
HpyCH4V TGCA 1 cut(s) 8
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 250, 268
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 43, 259
LmnI GCTCC 2 cut(s) 117, 290
LpnPI CCDG 5 cut(s) 25, 78, 114, 237, 277
Lsp1109I GCAGC 1 cut(s) 116
MaeII ACGT 2 cut(s) 250, 268
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 45, 261
MboI GATC 2 cut(s) 43, 259
MflI RGATCY 1 cut(s) 259
MluI ACGCGT 1 cut(s) 157
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 61, 227
MvnI CGCG 2 cut(s) 125, 159
NdeII GATC 2 cut(s) 43, 259
NlaIII CATG 1 cut(s) 96
NlaIV GGNNCC 2 cut(s) 261, 303
PfeI GAWTC 1 cut(s) 33
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 261, 303
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 43, 259
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 217
SetI ASST 6 cut(s) 72, 87, 247, 253, 271, 295
SinI GGWCC 1 cut(s) 98
SsiI CCGC 2 cut(s) 125, 288
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 253, 271
TaqI TCGA 2 cut(s) 46, 162
TfiI GAWTC 1 cut(s) 33
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 98
XmiI GTMKAC 2 cut(s) 78, 162
ZraI GACGTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.