Rorug06G0097900

Protease inhibitor seed storage lipid transfer family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002280
Physical Location & Seq
Reverse (-)
13116148 .. 13118417
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0097900.1

Sequence Viewer

Length: 1011 bp
ATGACTCGCAAAATGATCTCCTACTTCACTCTTGCATTCTGTTTATTCTTGTTTTTGTCTCCCTATGTTCATAGCGAGAGGTGTCCCTTTCCTTATGGCCAGCAGCTTGATTACACTTTCTACGACAGAACCTGCTCCCACTTGCCGATGATTGTTAAGTACAATGTCTGGGCCGCTCTCAAGAATGACACCAGGATGGCTGCATCTCTTCTTCGGATGCATTTTCACGACTGTATTGTTGATGGGTGTGAAGGCTCAGTGCTTCTTGATGACACAGAAGACTTCAGGGGCGAGAAGAATGCTCCACCAAATCGCAATTCACTTCGAGGGTTTGAAGTCATCGACAACATTAAAACAGACTTAGAGAGATTTTGCCCATCAACTGTTTCTTGTGCTGATATTTTGACTCTTGCAGCAAGAGAAGCAGTTGTTCTGTCAGGAGGGCCTAATTGGAATGTTCCATTGGGCCGAAGAGACGGGACAACTGCGAGTGAGAAGGCAGCTATTGATCAAATACCAGCACCTATTGAGTCTTTACAGAAAATCACTGCCAAGTTCACATCAAAGGGTCTTGACATCAAAGATGTTGTAGTCCTCTCAGGTGGACACACCTTAGGTTTTGCTCAGTGCTTCACCTTCAAGAGGAGACTCTTCAACTTTGACGGCTCCGGCAACCCTGACCCCACGCTTGATTCTTCAGTCCTTACAAACTTGCAAAGCATGTGTCCAAATAAAGACGCTGCAAACAGCAATCTAGCTCCTCTTGATTCCAGTACTTACAGATTTGACAATGTATATTACACAAACCTTGTTAACAACGCAGGTCTTTTAGAATCTGATCAGGCATTAGTGAAGGATCCAAACACTGCTGCAATGGTTAATTCCTATAGCGGGAACCCATTTCTTTTCTCTCAGGATTTTGCTGCATCTATGGTGAAGCTTGGTAATGTGGGAGTATTGACTGGGAAAAAAGGCCAGATAAGGAAGAGATGTGGATCTGTGAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

336

Amino Acids

37.03

Weight (kDa)

6.93

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 52 - 298 9e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 140, 812
AccBSI CCGCTC 1 cut(s) 176
AciI CCGC 2 cut(s) 174, 891
AclWI GGATC 3 cut(s) 851, 864, 1003
AcoI YGGCCR 1 cut(s) 97
AcuI CTGAAG 2 cut(s) 268, 681
AfaI GTAC 2 cut(s) 161, 775
AfiI CCNNNNNNNGG 2 cut(s) 642, 891
AgsI TTSAA 3 cut(s) 335, 640, 655
AjnI CCWGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 4 cut(s) 301, 333, 446, 478
AluBI AGCT 4 cut(s) 106, 503, 758, 940
AluI AGCT 4 cut(s) 106, 503, 758, 940
Alw26I GTCTC 3 cut(s) 63, 468, 640
AlwI GGATC 3 cut(s) 851, 864, 1003
AlwNI CAGNNNCTG 1 cut(s) 132
AoxI GGCC 5 cut(s) 97, 171, 443, 466, 973
ApeKI GCWGC 7 cut(s) 103, 200, 413, 500, 740, 869, 923
ArsI GACNNNNNNTTYG 2 cut(s) 709, 741
AspS9I GGNCC 3 cut(s) 171, 443, 466
AsuHPI GGTGA 2 cut(s) 625, 946
AxyI CCTNAGG 1 cut(s) 613
BalI TGGCCA 1 cut(s) 99
BamHI GGATCC 1 cut(s) 856
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 7 cut(s) 115, 187, 425, 512, 727, 856, 910
BccI CCATC 3 cut(s) 190, 236, 385
BceAI ACGGC 1 cut(s) 679
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 2 cut(s) 508, 838
BcoDI GTCTC 3 cut(s) 63, 468, 640
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 1 cut(s) 886
BfuAI ACCTGC 2 cut(s) 140, 812
BisI GCNGC 8 cut(s) 104, 174, 201, 414, 501, 741, 870, 924
BlsI GCNGC 8 cut(s) 105, 175, 202, 415, 502, 742, 871, 925
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 171, 443, 466
BmiI GGNNCC 3 cut(s) 667, 858, 896
BmrFI CCNGG 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 972
BmsI GCATC 3 cut(s) 207, 212, 935
BmuI ACTGGG 1 cut(s) 972
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 994
Bsc4I CCNNNNNNNGG 2 cut(s) 642, 891
Bse1I ACTGG 2 cut(s) 771, 967
Bse21I CCTNAGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 879
Bse8I GATNNNNATC 1 cut(s) 994
BseBI CCWGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 201, 222
BseJI GATNNNNATC 1 cut(s) 994
BseLI CCNNNNNNNGG 2 cut(s) 642, 891
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 4 cut(s) 270, 612, 638, 926
BseNI ACTGG 2 cut(s) 771, 967
BseRI GAGGAG 2 cut(s) 658, 750
BseXI GCAGC 7 cut(s) 115, 187, 425, 512, 727, 856, 910
BshFI GGCC 5 cut(s) 99, 173, 445, 468, 975
BsiSI CCGG 1 cut(s) 669
BslFI GGGAC 2 cut(s) 69, 493
BslI CCNNNNNNNGG 2 cut(s) 642, 891
BsmAI GTCTC 3 cut(s) 63, 468, 640
BsmBI CGTCTC 1 cut(s) 468
BsmFI GGGAC 2 cut(s) 69, 493
BsmI GAATGC 2 cut(s) 35, 304
BsnI GGCC 5 cut(s) 99, 173, 445, 468, 975
Bsp143I GATC 5 cut(s) 15, 508, 838, 856, 995
BspACI CCGC 2 cut(s) 174, 891
BspANI GGCC 5 cut(s) 99, 173, 445, 468, 975
BspCNI CTCAG 4 cut(s) 269, 611, 637, 925
BspLI GGNNCC 3 cut(s) 667, 858, 896
BspMI ACCTGC 2 cut(s) 140, 812
BspPI GGATC 3 cut(s) 851, 864, 1003
BsrBI CCGCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 2 cut(s) 771, 967
BssMI GATC 5 cut(s) 15, 508, 838, 856, 995
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 233, 385
Bst6I CTCTTC 4 cut(s) 213, 466, 656, 980
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 6 cut(s) 256, 361, 598, 613, 624, 912
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 201, 222
BstKTI GATC 5 cut(s) 18, 511, 841, 859, 998
BstMAI GTCTC 3 cut(s) 63, 468, 640
BstMBI GATC 5 cut(s) 15, 508, 838, 856, 995
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 886
BstV1I GCAGC 7 cut(s) 115, 187, 425, 512, 727, 856, 910
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 2 cut(s) 856, 995
BstYI RGATCY 2 cut(s) 856, 995
Bsu36I CCTNAGG 1 cut(s) 613
BsuRI GGCC 5 cut(s) 99, 173, 445, 468, 975
BtsCI GGATG 2 cut(s) 201, 222
BtsI GCAGTG 2 cut(s) 546, 864
BtsIMutI CAGTG 4 cut(s) 264, 546, 632, 864
BveI ACCTGC 2 cut(s) 140, 812
Cac8I GCNNGC 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 171, 443, 466
CseI GACGC 1 cut(s) 746
Csp6I GTAC 2 cut(s) 160, 774
CviAII CATG 1 cut(s) 721
CviQI GTAC 2 cut(s) 160, 774
DdeI CTNAG 6 cut(s) 256, 361, 598, 613, 624, 912
DpnI GATC 5 cut(s) 17, 510, 840, 858, 997
DpnII GATC 5 cut(s) 15, 508, 838, 856, 995
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 4 cut(s) 213, 466, 656, 980
EarI CTCTTC 4 cut(s) 213, 466, 656, 980
Eco57I CTGAAG 2 cut(s) 268, 681
Eco81I CCTNAGG 1 cut(s) 613
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 468
FaeI CATG 1 cut(s) 724
FaiI YATR 7 cut(s) 66, 72, 96, 722, 796, 888, 932
FaqI GGGAC 2 cut(s) 69, 493
FatI CATG 1 cut(s) 720
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 2 cut(s) 508, 838
Fnu4HI GCNGC 8 cut(s) 104, 174, 201, 414, 501, 741, 870, 924
FokI GGATG 2 cut(s) 208, 229
Fsp4HI GCNGC 8 cut(s) 104, 174, 201, 414, 501, 741, 870, 924
FspBI CTAG 1 cut(s) 755
GluI GCNGC 8 cut(s) 104, 174, 201, 414, 501, 741, 870, 924
HaeIII GGCC 5 cut(s) 99, 173, 445, 468, 975
HapII CCGG 1 cut(s) 669
HgaI GACGC 1 cut(s) 746
Hin1II CATG 1 cut(s) 724
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 7 cut(s) 4, 406, 530, 648, 692, 767, 833
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 1 cut(s) 669
HphI GGTGA 2 cut(s) 625, 946
Hpy166II GTNNAC 4 cut(s) 558, 605, 814, 1003
Hpy188I TCNGA 2 cut(s) 216, 838
Hpy188III TCNNGA 8 cut(s) 181, 227, 266, 438, 572, 640, 764, 914
Hpy8I GTNNAC 4 cut(s) 558, 605, 814, 1003
HpyAV CCTTC 4 cut(s) 245, 490, 646, 847
HpyCH4III ACNGT 2 cut(s) 233, 385
HpyCH4V TGCA 8 cut(s) 35, 203, 220, 413, 715, 743, 872, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 6 cut(s) 256, 361, 598, 613, 624, 912
Hsp92II CATG 1 cut(s) 724
Ksp22I TGATCA 2 cut(s) 508, 838
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 15, 508, 838, 856, 995
LmnI GCTCC 4 cut(s) 140, 307, 671, 763
Lsp1109I GCAGC 7 cut(s) 115, 187, 425, 512, 727, 856, 910
LweI GCATC 3 cut(s) 207, 212, 935
MaeI CTAG 1 cut(s) 755
MalI GATC 5 cut(s) 17, 510, 840, 858, 997
MbiI CCGCTC 1 cut(s) 176
MboI GATC 5 cut(s) 15, 508, 838, 856, 995
MboII GAAGA 8 cut(s) 200, 203, 290, 307, 483, 643, 687, 997
MflI RGATCY 2 cut(s) 856, 995
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 316, 448, 880
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 3 cut(s) 400, 539, 642
MnlI CCTC 6 cut(s) 72, 320, 434, 605, 636, 771
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 222
MscI TGGCCA 1 cut(s) 99
MseI TTAA 4 cut(s) 156, 351, 813, 879
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 1 cut(s) 193
Mva1269I GAATGC 2 cut(s) 35, 304
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 5 cut(s) 15, 508, 838, 856, 995
NlaIII CATG 1 cut(s) 724
NlaIV GGNNCC 3 cut(s) 667, 858, 896
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 1 cut(s) 724
PctI GAATGC 2 cut(s) 35, 304
PfeI GAWTC 3 cut(s) 692, 767, 833
PkrI GCNGC 8 cut(s) 105, 175, 202, 415, 502, 742, 871, 925
PleI GAGTC 3 cut(s) 400, 538, 642
PpsI GAGTC 3 cut(s) 400, 538, 642
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 667, 858, 896
PspPI GGNCC 3 cut(s) 171, 443, 466
PstNI CAGNNNCTG 1 cut(s) 132
PsuI RGATCY 2 cut(s) 856, 995
RsaI GTAC 2 cut(s) 161, 775
RsaNI GTAC 2 cut(s) 160, 774
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 4 cut(s) 156, 351, 813, 879
SatI GCNGC 8 cut(s) 104, 174, 201, 414, 501, 741, 870, 924
Sau3AI GATC 5 cut(s) 15, 508, 838, 856, 995
Sau96I GGNCC 3 cut(s) 171, 443, 466
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 3 cut(s) 400, 539, 642
ScrFI CCNGG 1 cut(s) 193
SfaNI GCATC 3 cut(s) 207, 212, 935
SfcI CTRYAG 1 cut(s) 886
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 316, 448, 880
SsiI CCGC 2 cut(s) 174, 891
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 233, 385
TaqI TCGA 2 cut(s) 325, 342
TasI AATT 3 cut(s) 316, 448, 880
TatI WGTACW 2 cut(s) 159, 773
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 3 cut(s) 692, 767, 833
Tru1I TTAA 4 cut(s) 156, 351, 813, 879
Tru9I TTAA 4 cut(s) 156, 351, 813, 879
TscAI CASTG 4 cut(s) 264, 553, 632, 871
TseI GCWGC 7 cut(s) 103, 200, 413, 500, 740, 869, 923
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 4 cut(s) 264, 553, 632, 871
XagI CCTNNNNNAGG 1 cut(s) 640
XceI RCATGY 1 cut(s) 724
XspI CTAG 1 cut(s) 755
ZrmI AGTACT 1 cut(s) 775
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.