Rh5DG160200

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002280
Physical Location & Seq
Reverse (-)
16503605 .. 16503958
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG160200.1

Sequence Viewer

Length: 354 bp
ATGCTAGCAGTGCTAGTAACTGTAGGCAATCTTTGGGGATTTGATGTGGGGATTGATGGGGCTGGGGAATGTGGAAGTAACCCAGAGGTTGTGGTATACAAGCTTGCTCCATGTGGACCAGCAGCACAAGATGGGAGCTTCGCGGTTTCTCCTAAGTGTTGCTCGTTGGTGAAACGCGTTGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAACTTCAGAGTCGTGTCCTCAACCCAGTAATCGCAGTCACCATACCTAAACGTTGTAAGGATCCCAGACATCTCAAGGGTTACAAGTGCGGAGGTAACTTAGTTTCCCAATATTCAGATTATATTACGAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

117

Amino Acids

12.47

Weight (kDa)

8.82

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 31 - 93 1.9e-08 Protease inhibitor/seed storage/LTP family
LTP_2 PF14368 32 - 95 5.6e-08 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 143, 177
AciI CCGC 2 cut(s) 143, 306
AclI AACGTT 1 cut(s) 268
AclWI GGATC 2 cut(s) 272, 285
AcuI CTGAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 175
AluBI AGCT 2 cut(s) 103, 138
AluI AGCT 2 cut(s) 103, 138
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 2 cut(s) 272, 285
ApeKI GCWGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 181, 247
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 50, 125
BfaI CTAG 3 cut(s) 5, 14, 352
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 236
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 134
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 2 cut(s) 143, 177
BsiHKAI GWGCWC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 143, 306
BspFNI CGCG 2 cut(s) 143, 177
BspLI GGNNCC 1 cut(s) 279
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 272, 285
BsrI ACTGG 1 cut(s) 242
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 97
Bst1107I GTATAC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 6, 105
BstDEI CTNAG 2 cut(s) 153, 316
BstFNI CGCG 2 cut(s) 143, 177
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 143, 177
BstV1I GCAGC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 6, 105
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 111
CviJI RGCY 3 cut(s) 62, 103, 138
CviKI_1 RGCY 3 cut(s) 62, 103, 138
DdeI CTNAG 2 cut(s) 153, 316
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 206
FaeI CATG 1 cut(s) 114
FaiI YATR 4 cut(s) 97, 112, 260, 339
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 3 cut(s) 5, 14, 352
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 114
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 226, 346
HphI GGTGA 2 cut(s) 181, 247
Hpy166II GTNNAC 3 cut(s) 97, 116, 181
Hpy188I TCNGA 2 cut(s) 225, 334
Hpy8I GTNNAC 3 cut(s) 97, 116, 181
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 153, 316
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 112, 135
LpnPI CCDG 5 cut(s) 48, 96, 132, 255, 295
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 3 cut(s) 5, 14, 352
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 5 cut(s) 16, 77, 253, 296, 311
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 210
MluI ACGCGT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 3 cut(s) 79, 245, 302
MvnI CGCG 2 cut(s) 143, 177
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 277
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 277
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 90, 105, 140, 265, 271, 313
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SsiI CCGC 2 cut(s) 143, 306
SspI AATATT 1 cut(s) 329
SspMI CTAG 3 cut(s) 5, 14, 352
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 271
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 3 cut(s) 5, 14, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.