Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002280

Physical Location & Seq

Genomic Coordinates Forward (+)

34051191 .. 34052094

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGTACCTCATCGTCATCATACTGGCGACGCTAGTAACTGTGGGCAATCTTTGGGGGTTTAATGTGGGGGTTGCTGGGGCTGGGAGCTGTGGAAGCAACCCGGAGGTTATGGTCTACAAGCTTGCTCCATGTGGACCAGCAGCACAAGATGGGAGCGTCGCGGTTTCTCCCAAGTGTTGCTCATTGATGAAACGCGTCGACAAGCGTTGCCTTTGTGCCCTTGTGCTCTCTGAACAAGTTCAGAGTCATGGCCTCAATCCAGCAATCGCAGTCACCATACCTAAACGTTGTAATGATCCCAGACGTCCCAAGGGTTACAAGTGCGGAGCTTATACGGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

115

Amino Acids

12.11

Weight (kDa)

9.26

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	31 - 105	1.4e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	39 - 109	5e-08	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002280)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G242600_v2.0.a1 Prupe.2G242700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022311 RchiOBHm_Chr5g0022411 RchiOBHm_Chr5g0069381 RchiOBHm_Chr6g0273821 RchiOBHm_Chr6g0273841
rosa_laevigata	RLG00000032572 RLG00000032658 RLG00000033466
rosa_multiflora	Rmu_sc0000178.1_g000009 Rmu_sc0002658.1_g000011 Rmu_sc0005639.1_g000007 Rmu_sc0021631.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056610 Rroxscaffold_1G00056650 Rroxscaffold_1G00056670 Rroxscaffold_3G00231410 Rroxscaffold_7G00192730
rosa_rugosa	Rorug04G0081100 Rorug04G0081200 Rorug05G0073400 Rorug05G0073400 Rorug06G0097900
rosa_samantha	Rh4DG183900 Rh5AG160400 Rh5BG159600 Rh5BG473000 Rh5CG173700 Rh5CG173900 Rh5CG259600 Rh5CG495600 Rh5DG160000 Rh5DG160200 Rh6AG192400 Rh6AG192500 Rh6BG196800 Rh6CG195700 Rh6CG195800 Rh6DG187800 Rh6DG188000
rosa_wichuraiana	Rw0G002530 Rw5G042380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	340
AccI	GTMKAC	2 cut(s)	117, 201
AccII	CGCG	2 cut(s)	164, 198
AciI	CCGC	2 cut(s)	164, 327
AclI	AACGTT	1 cut(s)	289
AclWI	GGATC	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	196
AluBI	AGCT	3 cut(s)	90, 124, 332
AluI	AGCT	3 cut(s)	90, 124, 332
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	2 cut(s)	77, 83
Bsh1236I	CGCG	2 cut(s)	164, 198
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	223, 231
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	164, 327
BspANI	GGCC	1 cut(s)	255
BspFNI	CGCG	2 cut(s)	164, 198
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	43, 340
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	126
BstFNI	CGCG	2 cut(s)	164, 198
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	2 cut(s)	164, 198
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	137
CseI	GACGC	3 cut(s)	40, 148, 187
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	132, 251
CviJI	RGCY	5 cut(s)	83, 90, 124, 255, 332
CviKI_1	RGCY	5 cut(s)	83, 90, 124, 255, 332
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	2 cut(s)	135, 254
FaiI	YATR	6 cut(s)	23, 113, 133, 252, 281, 336
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	131, 250
FblI	GTMKAC	2 cut(s)	117, 201
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	2 cut(s)	81, 87
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	3 cut(s)	40, 148, 187
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	135, 254
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	118, 137, 202
Hpy188I	TCNGA	2 cut(s)	235, 246
Hpy8I	GTNNAC	3 cut(s)	118, 137, 202
Hpy99I	CGWCG	3 cut(s)	34, 164, 203
HpyCH4III	ACNGT	2 cut(s)	43, 340
HpyCH4IV	ACGT	2 cut(s)	289, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	289, 307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	135, 254
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	4 cut(s)	87, 133, 156, 329
LpnPI	CCDG	7 cut(s)	11, 63, 69, 117, 153, 276, 316
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	289, 307
MaeIII	GTNAC	3 cut(s)	37, 274, 317
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	223, 231
MluI	ACGCGT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	20, 100, 266
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	2 cut(s)	164, 198
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	135, 254
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	77, 83
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	223, 231
SetI	ASST	8 cut(s)	12, 92, 111, 126, 286, 292, 310, 334
SinI	GGWCC	1 cut(s)	137
SsiI	CCGC	2 cut(s)	164, 327
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	43, 340
TaiI	ACGT	2 cut(s)	292, 310
TaqI	TCGA	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	17, 206
VpaK11BI	GGWCC	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	117, 201
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.