Prupe.2G253600_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013832
Physical Location & Seq
Forward (+)
26689440 .. 26691136
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G253600.1

Sequence Viewer

Length: 1086 bp
ATGGAGCAAAAAACCAACCTTCTCCTTATACTCTTGTTCTCTTTCGCCTCCTTGCTAACTCTACCAATTCCAACCACCGCGTCTCAACCTATCTCCGCTGTTTTCGCCTTCGGCGATTCTACGCTGGATTCAGGCAACAACAATCGCCTCCCCTTCACGCTTTTCAAAAGTGACCACAAACCCTACGGCAAAGACTTGCCAAATCACGTCCCTTCCGGAAGGTTCTCAAATGGAAAGCTCGCAACAGACTTCATGGTCTCCAAACTTGGCCTCAAGGACCTCCTGCCCGCTTACTATGACCCGAAACTGACCGACCGCGACTTGCTAACAGGTGTCAGTTTCGCGTCCGGAGGTGGCGGGCTGGATGATTTGACCTTGGCCGTGTCCAAGGCCACGAGTATGTCGAAGCAGTTGGAGGCCTTTGATGAAGCGTTGGGAAGGATGAGGAAAACTGTTGGGGAACAGAATTGTAGCGAGATTGTGAAAAACGCTGTGTTTGTGATCAGTGCTGGTACAAACGACATGGTGTTTAACATGTACGAGTTGCCTGTAACTGTTAGGAAAATTGCGTTCTCACCTTCACGGTACCAGGATTTTCTGCTCCGGGCACTTGGATCTTTCGTTCAGAACCTATACAAGAGGGGAGGCAGGAGGTTCCAGGTGGCGAGTCTTCCACCAATCGGATGCCTGCCAATGCAGCTCACAATAGGCAGCATCTTCAATGGGCTTCGCCGTGTGTGCGTGGACAAGCAAAACAAGGACTCTCAGGCCTACAACACCAAGCTCCAAGACCTCATCTCAAGGTTGCAAGCCTCACTTTCTGGTTCCAGGCTCGCCTATTTTGACACCTACAATCCCATTATGGACATGTTCTCCAACCCAGACAAATATGGGTTTTCACAAACACATGAAGGATGCTGTGGAACAGGGCTGGTAGAGTTGGGCCCTTTGTGCGGCGAGCTTTCATTGACATGTACAGACGCTTCTAAATTTCTGTTCTGGGATTCGATGCATCCTTCCCAAGCAGCATACTCCGTTCTTGCTGACATGGCTCAAAAGACGGTGTTACCCTATCTTATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.6

Weight (kDa)

8.37

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40250
fragaria_vesca FvH4_7g24850 FvH4_7g24850
malus_domestica MD01G1156400.v1.1 MD07G1225100.v1.1
prunus_persica Prupe.2G253600_v2.0.a1
pyrus_communis pycom07g20380
rosa_chinensis RchiOBHm_Chr1g0370731
rosa_laevigata RLG00000027015
rosa_multiflora Rmu_co8466073.1_g000001 Rmu_sc0004550.1_g000013
rosa_rugosa Rorug01G0358700
rosa_samantha Rh1AG368400 Rh1BG331900 Rh1CG345800 Rh1DG363300
rosa_wichuraiana Rw1G032420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 585
AccB1I GGYRCC 1 cut(s) 585
AccII CGCG 3 cut(s) 80, 318, 344
AccIII TCCGGA 2 cut(s) 215, 347
AciI CCGC 6 cut(s) 78, 96, 288, 316, 357, 954
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 1 cut(s) 989
AfaI GTAC 4 cut(s) 514, 539, 587, 976
AfiI CCNNNNNNNGG 2 cut(s) 680, 953
AflIII ACRYGT 3 cut(s) 534, 867, 971
AgsI TTSAA 2 cut(s) 166, 721
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 3 cut(s) 588, 657, 827
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 4 cut(s) 238, 700, 784, 961
AluI AGCT 4 cut(s) 238, 700, 784, 961
Alw26I GTCTC 2 cut(s) 87, 262
AlwI GGATC 1 cut(s) 622
Aor13HI TCCGGA 2 cut(s) 215, 347
AoxI GGCC 6 cut(s) 268, 378, 390, 417, 768, 943
ApaI GGGCCC 1 cut(s) 947
ApeKI GCWGC 3 cut(s) 697, 711, 1025
ApoI RAATTY 1 cut(s) 989
Asp718I GGTACC 1 cut(s) 585
AspS9I GGNCC 3 cut(s) 277, 943, 944
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 1 cut(s) 567
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 2 cut(s) 610, 947
BanI GGYRCC 1 cut(s) 585
BanII GRGCYC 1 cut(s) 947
BarI GAAGNNNNNNTAC 2 cut(s) 967, 999
BauI CACGAG 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 3 cut(s) 709, 723, 1037
BceAI ACGGC 3 cut(s) 202, 365, 717
BciT130I CCWGG 3 cut(s) 590, 659, 829
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 2 cut(s) 87, 262
BisI GCNGC 4 cut(s) 698, 712, 955, 1026
BlsI GCNGC 4 cut(s) 699, 713, 956, 1027
Bme1390I CCNGG 4 cut(s) 590, 605, 659, 829
Bme18I GGWCC 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 3 cut(s) 277, 943, 944
BmiI GGNNCC 4 cut(s) 587, 656, 826, 945
BmrFI CCNGG 4 cut(s) 590, 605, 659, 829
BmsI GCATC 5 cut(s) 674, 723, 905, 999, 1021
BpiI GAAGAC 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 257, 784
BpuMI CCSGG 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 375, 387
BsaWI WCCGGW 2 cut(s) 215, 347
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 953
BseAI TCCGGA 2 cut(s) 215, 347
BseBI CCWGG 3 cut(s) 590, 659, 829
BseDI CCNNGG 2 cut(s) 375, 387
BseGI GGATG 5 cut(s) 370, 447, 689, 920, 1012
BseLI CCNNNNNNNGG 2 cut(s) 680, 953
BseMII CTCAG 1 cut(s) 779
BseSI GKGCMC 2 cut(s) 610, 947
BseXI GCAGC 3 cut(s) 709, 723, 1037
Bsh1236I CGCG 3 cut(s) 80, 318, 344
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 6 cut(s) 270, 380, 392, 419, 770, 945
BshNI GGYRCC 1 cut(s) 585
BsiEI CGRYCG 1 cut(s) 316
BsiSI CCGG 3 cut(s) 216, 348, 604
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 680, 953
BsmAI GTCTC 2 cut(s) 87, 262
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 6 cut(s) 270, 380, 392, 419, 770, 945
Bso31I GGTCTC 1 cut(s) 262
Bsp120I GGGCCC 1 cut(s) 943
Bsp1286I GDGCHC 2 cut(s) 610, 947
Bsp13I TCCGGA 2 cut(s) 215, 347
Bsp1407I TGTACA 1 cut(s) 974
Bsp143I GATC 2 cut(s) 501, 614
BspACI CCGC 6 cut(s) 78, 96, 288, 316, 357, 954
BspANI GGCC 6 cut(s) 270, 380, 392, 419, 770, 945
BspCNI CTCAG 1 cut(s) 778
BspEI TCCGGA 2 cut(s) 215, 347
BspFNI CGCG 3 cut(s) 80, 318, 344
BspLI GGNNCC 4 cut(s) 587, 656, 826, 945
BspPI GGATC 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 585
BspTNI GGTCTC 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 974
BssECI CCNNGG 2 cut(s) 375, 387
BssMI GATC 2 cut(s) 501, 614
BssSI CACGAG 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 375, 387
Bst2BI CACGAG 1 cut(s) 394
Bst2UI CCWGG 3 cut(s) 590, 659, 829
Bst4CI ACNGT 4 cut(s) 454, 556, 585, 1063
BstAUI TGTACA 1 cut(s) 974
BstC8I GCNNGC 7 cut(s) 240, 288, 359, 689, 810, 834, 959
BstDEI CTNAG 1 cut(s) 765
BstF5I GGATG 5 cut(s) 370, 447, 689, 920, 1012
BstFNI CGCG 3 cut(s) 80, 318, 344
BstKTI GATC 2 cut(s) 504, 617
BstMAI GTCTC 2 cut(s) 87, 262
BstMBI GATC 2 cut(s) 501, 614
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 5 cut(s) 104, 697, 738, 951, 1049
BstNI CCWGG 3 cut(s) 590, 659, 829
BstNSI RCATGY 3 cut(s) 538, 871, 975
BstSCI CCNGG 4 cut(s) 588, 603, 657, 827
BstSLI GKGCMC 2 cut(s) 610, 947
BstUI CGCG 3 cut(s) 80, 318, 344
BstV1I GCAGC 3 cut(s) 709, 723, 1037
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 6 cut(s) 270, 380, 392, 419, 770, 945
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 5 cut(s) 370, 447, 689, 920, 1012
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 7 cut(s) 240, 288, 359, 689, 810, 834, 959
Cfr13I GGNCC 3 cut(s) 277, 943, 944
CseI GACGC 3 cut(s) 69, 333, 989
Csp6I GTAC 4 cut(s) 513, 538, 586, 975
CviAII CATG 7 cut(s) 253, 523, 535, 868, 908, 972, 1048
CviQI GTAC 4 cut(s) 513, 538, 586, 975
DdeI CTNAG 1 cut(s) 765
DpnI GATC 2 cut(s) 503, 616
DpnII GATC 2 cut(s) 501, 614
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 375, 387
Eco147I AGGCCT 2 cut(s) 419, 770
Eco24I GRGCYC 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 277, 944
EcoRII CCWGG 3 cut(s) 588, 657, 827
EcoT14I CCWWGG 2 cut(s) 375, 387
EcoT22I ATGCAT 1 cut(s) 1014
EcoT38I GRGCYC 1 cut(s) 947
ErhI CCWWGG 2 cut(s) 375, 387
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 7 cut(s) 256, 526, 538, 871, 911, 975, 1051
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 194
FatI CATG 7 cut(s) 252, 522, 534, 867, 907, 971, 1047
FauI CCCGC 2 cut(s) 295, 350
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 4 cut(s) 698, 712, 955, 1026
FokI GGATG 5 cut(s) 377, 454, 696, 927, 999
FriOI GRGCYC 1 cut(s) 947
Fsp4HI GCNGC 4 cut(s) 698, 712, 955, 1026
GluI GCNGC 4 cut(s) 698, 712, 955, 1026
HaeIII GGCC 6 cut(s) 270, 380, 392, 419, 770, 945
HapII CCGG 3 cut(s) 216, 348, 604
HgaI GACGC 3 cut(s) 69, 333, 989
Hin1II CATG 7 cut(s) 256, 526, 538, 871, 911, 975, 1051
HinfI GANTC 5 cut(s) 116, 128, 667, 761, 1004
HpaII CCGG 3 cut(s) 216, 348, 604
HphI GGTGA 1 cut(s) 567
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 2 cut(s) 627, 683
Hpy188III TCNNGA 2 cut(s) 216, 348
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 9 cut(s) 29, 118, 163, 213, 222, 432, 588, 905, 1026
HpyCH4III ACNGT 4 cut(s) 454, 556, 585, 1063
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 697, 808, 1012
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 697, 738, 951, 1049
HpyF3I CTNAG 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 7 cut(s) 256, 526, 538, 871, 911, 975, 1051
Kpn2I TCCGGA 2 cut(s) 215, 347
KpnI GGTACC 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 2 cut(s) 501, 614
LmnI GCTCC 3 cut(s) 4, 606, 789
Lsp1109I GCAGC 3 cut(s) 709, 723, 1037
LweI GCATC 5 cut(s) 674, 723, 905, 999, 1021
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 170, 550, 1065
MalI GATC 2 cut(s) 503, 616
MboI GATC 2 cut(s) 501, 614
MboII GAAGA 2 cut(s) 662, 709
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 610, 947
MluCI AATT 4 cut(s) 66, 466, 564, 989
MlyI GAGTC 2 cut(s) 676, 755
MmeI TCCRAC 3 cut(s) 95, 393, 900
Mph1103I ATGCAT 1 cut(s) 1014
MroI TCCGGA 2 cut(s) 215, 347
MseI TTAA 2 cut(s) 531, 1084
MslI CAYNNNNRTG 2 cut(s) 398, 970
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 216, 348, 604
MspR9I CCNGG 4 cut(s) 590, 605, 659, 829
MvaI CCWGG 3 cut(s) 590, 659, 829
MvnI CGCG 3 cut(s) 80, 318, 344
MwoI GCNNNNNNNGC 5 cut(s) 104, 697, 738, 951, 1049
NciI CCSGG 1 cut(s) 605
NdeII GATC 2 cut(s) 501, 614
NlaIII CATG 7 cut(s) 256, 526, 538, 871, 911, 975, 1051
NlaIV GGNNCC 4 cut(s) 587, 656, 826, 945
NmuCI GTSAC 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 1014
NspI RCATGY 3 cut(s) 538, 871, 975
PceI AGGCCT 2 cut(s) 419, 770
PciI ACATGT 3 cut(s) 534, 867, 971
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 401
PfeI GAWTC 3 cut(s) 116, 128, 1004
PkrI GCNGC 4 cut(s) 699, 713, 956, 1027
PleI GAGTC 2 cut(s) 675, 755
PpsI GAGTC 2 cut(s) 675, 755
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 3 cut(s) 534, 867, 971
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 588, 657, 827
PspGI CCWGG 3 cut(s) 588, 657, 827
PspN4I GGNNCC 4 cut(s) 587, 656, 826, 945
PspOMI GGGCCC 1 cut(s) 943
PspPI GGNCC 3 cut(s) 277, 943, 944
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 4 cut(s) 514, 539, 587, 976
RsaNI GTAC 4 cut(s) 513, 538, 586, 975
RseI CAYNNNNRTG 2 cut(s) 398, 970
SaqAI TTAA 2 cut(s) 531, 1084
SatI GCNGC 4 cut(s) 698, 712, 955, 1026
Sau3AI GATC 2 cut(s) 501, 614
Sau96I GGNCC 3 cut(s) 277, 943, 944
SchI GAGTC 2 cut(s) 676, 755
ScrFI CCNGG 4 cut(s) 590, 605, 659, 829
SduI GDGCHC 2 cut(s) 610, 947
SfaNI GCATC 5 cut(s) 674, 723, 905, 999, 1021
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 398, 970
SmlI CTYRAG 2 cut(s) 272, 799
SmoI CTYRAG 2 cut(s) 272, 799
Sse9I AATT 4 cut(s) 66, 466, 564, 989
SseBI AGGCCT 2 cut(s) 419, 770
SsiI CCGC 6 cut(s) 78, 96, 288, 316, 357, 954
StuI AGGCCT 2 cut(s) 419, 770
StyD4I CCNGG 4 cut(s) 588, 603, 657, 827
StyI CCWWGG 2 cut(s) 375, 387
TaaI ACNGT 4 cut(s) 454, 556, 585, 1063
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 404, 1007
TaqII GACCGA 1 cut(s) 326
TasI AATT 4 cut(s) 66, 466, 564, 989
TatI WGTACW 1 cut(s) 974
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 3 cut(s) 116, 128, 1004
Tru1I TTAA 2 cut(s) 531, 1084
Tru9I TTAA 2 cut(s) 531, 1084
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 697, 711, 1025
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 4 cut(s) 241, 441, 924, 954
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 989
XceI RCATGY 3 cut(s) 538, 871, 975
Zsp2I ATGCAT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.