Prupe.2G307900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
29230035 .. 29232194
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G307900.1

Sequence Viewer

Length: 2160 bp
ATGTTGATGGTGGGAACATGGAAGCGCAGCCGATGGAAGCCGAACGTTAAACAGTTGTCGACCCTTTATCAACCTGCGAAAACTCTAGTCTCCGACATAGTTTCCACCAACGTCTGCATAACTCGGTATAGCAAATGCGGGCAGCTAGATGTTGCTCGGAAGGTGTTCGACGAAATGCCCATCCGAACCGTCGTCTCATGGAACGCCATGGTTTCGGGGTATTCAAAGTGGGGAAGATTCAGTGAGGCTCTATCTTTGGTTTCGATTATGCATCATGGCAATGTGAGACTCAATGAAACGACCTTTTTGACAACTCTTGGCGTCTGCGCGCGTTCAGGGTCTTTGAGTGAGGGAAGAGAGTTGCATTGCTCGGTGCTGAAAACTGGGACGGAGTGTTTTGAGCTAGTGGGGAGTTCTCTGTTGCATTTCTACTCTAATTGCCTTAAAATTGAGGATGCTAAGCGGGTTTTTGATGAGCTGCGTGGTGGAAATGAGTTGTTGTGGAGCTTAATGCTCGTGGGATACGTGCAATGTAATTTGATGGGTGATGCTATAGAATTGTTTCTTAAAATGCCGAAACGGGATGTTGTGGCATGGACTACGTTGATTTCAGGGTACGCTAAGAGCGAGGATGGGTGTGAGAGAGCCTTGGAGTTGTTTCAATGGATGAGGGGGAGTGGTGAGGTGGTTCCTAATGAGTTTACGTTGGATTGTGTTGTAAGGGCTTATGGGAGATTGGGAGTGCTGTGTGCAGGGAAGGCTGTGCATGGACTTTTGATTAAGTACGGTTTTGAATCTGAAGAATCCATTGGTGGTGCTTTGATAGAATTTTATTGTGATAGTGAGGCTGTTCATTGTGCCAAGAGAGTTTATGATCGACTAGAAAACCCATGTTTAAATGCTTCAAATTCGCTTATTGGGAGACTTGTATTGATGGATAGGATTGAAGATGCAGAAAGAATTTTTAGTAGACTAAAAGAAAAGGATCCAGTTTCATATAATTTGATGATCAAAGGTTATGCGATGAGTGGTCAAGTTGATCAGTCGAAGAGGTTGTTTGAGAATATGAAGCATAGAACTATAATCTCTTCAAATACCATGATTTCTGTGTATTCTAGGATTGGGGACATTGATATGGCTTTTAAGCTTTTTGAAGAAACGAAAAGAGAAAGGGATCCTGTAACATGGAATGCCATGATCTCGGGTCACATTCAAAATCATCAGCATGAGGAGGCTTTGGAACTATATGTGACAATGCACAGATTGTCAATTGACCGTACAAGATCAACATTCTCTGCTCTGTTTCATGCCTGTTCATGCCTTGGATCTCTTCAATTGGGACAAGTACTTCATGCCCAGTTGATTAAGACACCATTCGAATCGAATGTGTATGTTGGAACATCCCTAATAGATATGTACTCAAAATGTGGAAGCATCACTGATGCTGAAACATCATTTATCTGCATTCGTTCACCAAATGTGGCGGCTTTGACAGCTCTCATTAATGGGTATGCGCAGTATGGGCTTGGCTCTGAGGCAATGTTGCTGTTTGAGCAAATGCTAAAGCAAGGAGTCATCCCTAATGCTGCTACTTTTGTGGGGATTCTGTCTGCCTGCAGTCGTGCTGGTCTGGTCGACGAAGGGATGAAAATTTTCCACATGATGGAAGGAAGTTATGGAGTAAACCCAACTCTTGAACACTACGCATGCATAGTGGATCTTCTTGGTAGGTCTGGTCATCTACAAGAAGCTATGGAGTTTATCGATGAGATGCCGACGGAACCAGATGGGGTTATCTGGGGAGCTCTGCTAAATGCTTGTTGGTTCTGGATGGACATGGAATTGGGTGAGAAGGTGGCTGAGAAAATGTTTAGCTTGGATCCCAAGCCAATATCCGCTTATATAATTTTGTCTAACATATATGCAGTACTGGGAAAGTGGGGGGCAAAGATGAATGCAAGGAAGAGATTGAGAAGCTTGGAAGTGAAAAAGGATCCTGGATGTAGTTGGATTGAGCTGAACAGGAAAGTTCATGTGTTCTCTGTAGAAGACATTACCCATCCTTATTGTAATCTGATTTATGAAACGTTGGAGTTTCTGACAGCAAATGTAAACTCTATTGTTCAGTTCGATTGTCTTTATGAAACATACTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

720

Amino Acids

80.88

Weight (kDa)

6.13

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1515
Acc36I ACCTGC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 1663
AccI GTMKAC 3 cut(s) 59, 970, 1635
AccII CGCG 2 cut(s) 329, 331
AciI CCGC 4 cut(s) 138, 463, 1484, 1896
AclI AACGTT 2 cut(s) 45, 2087
AcsI RAATTY 4 cut(s) 827, 907, 960, 1650
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 6 cut(s) 617, 785, 1279, 1347, 1418, 1929
AfiI CCNNNNNNNGG 1 cut(s) 1663
AjnI CCWGG 1 cut(s) 1996
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
Alw21I GWGCWC 1 cut(s) 1807
Alw26I GTCTC 4 cut(s) 94, 199, 280, 916
Ama87I CYCGRG 1 cut(s) 1201
ApeKI GCWGC 4 cut(s) 27, 142, 478, 1586
ApoI RAATTY 4 cut(s) 827, 907, 960, 1650
AseI ATTAAT 1 cut(s) 1503
Asp700I GAANNNNTTC 3 cut(s) 164, 561, 1652
AspLEI GCGC 4 cut(s) 27, 329, 331, 1516
AsuHPI GGTGA 4 cut(s) 557, 692, 1464, 1859
AsuII TTCGAA 1 cut(s) 1377
AvaI CYCGRG 1 cut(s) 1201
BamHI GGATCC 4 cut(s) 985, 1174, 1879, 1993
BanII GRGCYC 1 cut(s) 1807
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 2055
Bbv12I GWGCWC 1 cut(s) 1807
BbvI GCAGC 4 cut(s) 39, 154, 465, 1573
BccI CCATC 9 cut(s) 27, 188, 535, 626, 928, 1657, 1781, 1825, 2067
BciT130I CCWGG 1 cut(s) 1998
BciVI GTATCC 1 cut(s) 515
BclI TGATCA 2 cut(s) 1008, 1039
BcoDI GTCTC 4 cut(s) 94, 199, 280, 916
BfaI CTAG 5 cut(s) 86, 146, 404, 881, 1116
BfmI CTRYAG 3 cut(s) 552, 1615, 2043
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 5 cut(s) 28, 143, 479, 1485, 1587
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 5 cut(s) 29, 144, 480, 1486, 1588
BmcAI AGTACT 2 cut(s) 1347, 1929
Bme1390I CCNGG 1 cut(s) 1998
BmeT110I CYCGRG 1 cut(s) 1201
BmiI GGNNCC 6 cut(s) 690, 987, 1176, 1782, 1881, 1995
BmrFI CCNGG 1 cut(s) 1998
BmrI ACTGGG 3 cut(s) 393, 1351, 1940
BmsI GCATC 7 cut(s) 280, 445, 538, 940, 1432, 1443, 1761
BmuI ACTGGG 3 cut(s) 393, 1351, 1940
BpiI GAAGAC 1 cut(s) 2055
Bpu1102I GCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 1377
Bsa29I ATCGAT 1 cut(s) 1764
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 207, 648, 1321
Bsc4I CCNNNNNNNGG 1 cut(s) 1663
Bse1I ACTGG 4 cut(s) 388, 989, 1357, 1935
Bse3DI GCAATG 4 cut(s) 286, 364, 536, 1545
BseBI CCWGG 1 cut(s) 1998
BseCI ATCGAT 1 cut(s) 1764
BseDI CCNNGG 3 cut(s) 207, 648, 1321
BseLI CCNNNNNNNGG 1 cut(s) 1663
BseMI GCAATG 4 cut(s) 286, 364, 536, 1545
BseMII CTCAG 2 cut(s) 1524, 1851
BseNI ACTGG 4 cut(s) 388, 989, 1357, 1935
BsePI GCGCGC 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 1244
BseXI GCAGC 4 cut(s) 39, 154, 465, 1573
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 2 cut(s) 329, 331
BshVI ATCGAT 1 cut(s) 1764
BsiHKAI GWGCWC 1 cut(s) 1807
BsiHKCI CYCGRG 1 cut(s) 1201
BslFI GGGAC 3 cut(s) 400, 1139, 1353
BslI CCNNNNNNNGG 1 cut(s) 1663
BsmAI GTCTC 4 cut(s) 94, 199, 280, 916
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 3 cut(s) 400, 1139, 1353
BsmI GAATGC 3 cut(s) 1195, 1464, 1960
BsoBI CYCGRG 1 cut(s) 1201
Bsp119I TTCGAA 1 cut(s) 1377
Bsp1286I GDGCHC 1 cut(s) 1807
Bsp1720I GCTNAGC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 4 cut(s) 138, 463, 1484, 1896
BspCNI CTCAG 2 cut(s) 1525, 1852
BspDI ATCGAT 1 cut(s) 1764
BspFNI CGCG 2 cut(s) 329, 331
BspLI GGNNCC 6 cut(s) 690, 987, 1176, 1782, 1881, 1995
BspMAI CTGCAG 1 cut(s) 1619
BspMI ACCTGC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 1377
BsrDI GCAATG 4 cut(s) 286, 364, 536, 1545
BsrI ACTGG 4 cut(s) 388, 989, 1357, 1935
BssECI CCNNGG 3 cut(s) 207, 648, 1321
BssHII GCGCGC 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 3 cut(s) 207, 648, 1321
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 1998
Bst4CI ACNGT 4 cut(s) 54, 190, 788, 1277
Bst6I CTCTTC 5 cut(s) 349, 1043, 1093, 1335, 1958
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 1377
BstC8I GCNNGC 4 cut(s) 140, 329, 1615, 1708
BstDEI CTNAG 4 cut(s) 459, 621, 1533, 1860
BstDSI CCRYGG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 329, 331
BstHHI GCGC 4 cut(s) 27, 329, 331, 1516
BstMAI GTCTC 4 cut(s) 94, 199, 280, 916
BstMWI GCNNNNNNNGC 4 cut(s) 758, 1493, 1522, 1552
BstNI CCWGG 1 cut(s) 1998
BstNSI RCATGY 1 cut(s) 1710
BstSCI CCNGG 1 cut(s) 1996
BstSFI CTRYAG 3 cut(s) 552, 1615, 2043
BstUI CGCG 2 cut(s) 329, 331
BstV1I GCAGC 4 cut(s) 39, 154, 465, 1573
BstV2I GAAGAC 1 cut(s) 2055
BstX2I RGATCY 6 cut(s) 985, 1174, 1325, 1717, 1879, 1993
BstYI RGATCY 6 cut(s) 985, 1174, 1325, 1717, 1879, 1993
Bsu15I ATCGAT 1 cut(s) 1764
BsuI GTATCC 1 cut(s) 515
BsuTUI ATCGAT 1 cut(s) 1764
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 1037
BtsIMutI CAGTG 2 cut(s) 247, 1437
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 4 cut(s) 140, 329, 1615, 1708
CfoI GCGC 4 cut(s) 27, 329, 331, 1516
ClaI ATCGAT 1 cut(s) 1764
CseI GACGC 1 cut(s) 310
Csp6I GTAC 6 cut(s) 616, 784, 1278, 1346, 1417, 1928
CviQI GTAC 6 cut(s) 616, 784, 1278, 1346, 1417, 1928
DdeI CTNAG 4 cut(s) 459, 621, 1533, 1860
DraI TTTAAA 1 cut(s) 897
Eam1104I CTCTTC 5 cut(s) 349, 1043, 1093, 1335, 1958
EarI CTCTTC 5 cut(s) 349, 1043, 1093, 1335, 1958
Ecl136II GAGCTC 1 cut(s) 1805
Eco130I CCWWGG 3 cut(s) 207, 648, 1321
Eco24I GRGCYC 1 cut(s) 1807
Eco53kI GAGCTC 1 cut(s) 1805
Eco57I CTGAAG 1 cut(s) 819
Eco88I CYCGRG 1 cut(s) 1201
EcoICRI GAGCTC 1 cut(s) 1805
EcoRII CCWGG 1 cut(s) 1996
EcoT14I CCWWGG 3 cut(s) 207, 648, 1321
EcoT22I ATGCAT 2 cut(s) 273, 1712
EcoT38I GRGCYC 1 cut(s) 1807
ErhI CCWWGG 3 cut(s) 207, 648, 1321
Esp3I CGTCTC 1 cut(s) 199
FaqI GGGAC 3 cut(s) 400, 1139, 1353
FauI CCCGC 2 cut(s) 131, 456
FbaI TGATCA 2 cut(s) 1008, 1039
FblI GTMKAC 3 cut(s) 59, 970, 1635
Fnu4HI GCNGC 5 cut(s) 28, 143, 479, 1485, 1587
FriOI GRGCYC 1 cut(s) 1807
Fsp4HI GCNGC 5 cut(s) 28, 143, 479, 1485, 1587
FspBI CTAG 5 cut(s) 86, 146, 404, 881, 1116
FspI TGCGCA 1 cut(s) 1515
GlaI GCGC 4 cut(s) 26, 328, 330, 1515
GluI GCNGC 5 cut(s) 28, 143, 479, 1485, 1587
HgaI GACGC 1 cut(s) 310
HhaI GCGC 4 cut(s) 27, 329, 331, 1516
Hin1I GRCGYC 1 cut(s) 321
Hin6I GCGC 4 cut(s) 25, 327, 329, 1514
HinP1I GCGC 4 cut(s) 25, 327, 329, 1514
HincII GTYRAC 2 cut(s) 60, 1636
HindII GTYRAC 2 cut(s) 60, 1636
HindIII AAGCTT 2 cut(s) 1145, 1975
HinfI GANTC 7 cut(s) 237, 288, 794, 803, 1379, 1572, 1603
HphI GGTGA 4 cut(s) 557, 692, 1464, 1859
Hpy166II GTNNAC 7 cut(s) 60, 702, 971, 1472, 1636, 1684, 2113
Hpy188I TCNGA 7 cut(s) 94, 159, 185, 799, 1534, 2076, 2100
Hpy188III TCNNGA 2 cut(s) 1694, 1828
Hpy8I GTNNAC 7 cut(s) 60, 702, 971, 1472, 1636, 1684, 2113
Hpy99I CGWCG 4 cut(s) 173, 194, 1640, 1780
HpyAV CCTTC 5 cut(s) 154, 751, 1634, 1661, 1846
HpyCH4III ACNGT 4 cut(s) 54, 190, 788, 1277
HpyCH4IV ACGT 6 cut(s) 45, 111, 525, 602, 704, 2087
HpyF10VI GCNNNNNNNGC 4 cut(s) 758, 1493, 1522, 1552
HpyF3I CTNAG 4 cut(s) 459, 621, 1533, 1860
HpySE526I ACGT 6 cut(s) 45, 111, 525, 602, 704, 2087
Hsp92I GRCGYC 1 cut(s) 321
HspAI GCGC 4 cut(s) 25, 327, 329, 1514
Ksp22I TGATCA 2 cut(s) 1008, 1039
LmnI GCTCC 2 cut(s) 504, 1802
Lsp1109I GCAGC 4 cut(s) 39, 154, 465, 1573
LweI GCATC 7 cut(s) 280, 445, 538, 940, 1432, 1443, 1761
MaeI CTAG 5 cut(s) 86, 146, 404, 881, 1116
MaeII ACGT 6 cut(s) 45, 111, 525, 602, 704, 2087
MaeIII GTNAC 3 cut(s) 1180, 1205, 1249
MfeI CAATTG 2 cut(s) 1269, 1334
MflI RGATCY 6 cut(s) 985, 1174, 1325, 1717, 1879, 1993
MhlI GDGCHC 1 cut(s) 1807
MlyI GAGTC 2 cut(s) 282, 1581
MmeI TCCRAC 5 cut(s) 117, 687, 1375, 1988, 2070
Mph1103I ATGCAT 2 cut(s) 273, 1712
MroXI GAANNNNTTC 3 cut(s) 164, 561, 1652
MseI TTAA 9 cut(s) 48, 444, 509, 567, 780, 896, 1143, 1365, 1503
MslI CAYNNNNRTG 3 cut(s) 279, 1133, 1224
MspR9I CCNGG 1 cut(s) 1998
MunI CAATTG 2 cut(s) 1269, 1334
Mva1269I GAATGC 3 cut(s) 1195, 1464, 1960
MvaI CCWGG 1 cut(s) 1998
MvnI CGCG 2 cut(s) 329, 331
MwoI GCNNNNNNNGC 4 cut(s) 758, 1493, 1522, 1552
NcoI CCATGG 1 cut(s) 207
NlaIV GGNNCC 6 cut(s) 690, 987, 1176, 1782, 1881, 1995
NmuCI GTSAC 2 cut(s) 1205, 1249
NsbI TGCGCA 1 cut(s) 1515
NsiI ATGCAT 2 cut(s) 273, 1712
NspI RCATGY 1 cut(s) 1710
NspV TTCGAA 1 cut(s) 1377
PaeI GCATGC 1 cut(s) 1710
PauI GCGCGC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 2 cut(s) 522, 624
PctI GAATGC 3 cut(s) 1195, 1464, 1960
PdmI GAANNNNTTC 3 cut(s) 164, 561, 1652
PfeI GAWTC 5 cut(s) 237, 794, 803, 1379, 1603
PflMI CCANNNNNTGG 1 cut(s) 1663
PfoI TCCNGGA 1 cut(s) 1996
PkrI GCNGC 5 cut(s) 29, 144, 480, 1486, 1588
PleI GAGTC 2 cut(s) 282, 1580
PpsI GAGTC 2 cut(s) 282, 1580
Ppu21I YACGTR 1 cut(s) 526
PshBI ATTAAT 1 cut(s) 1503
Psp124BI GAGCTC 1 cut(s) 1807
Psp1406I AACGTT 2 cut(s) 45, 2087
Psp6I CCWGG 1 cut(s) 1996
PspGI CCWGG 1 cut(s) 1996
PspN4I GGNNCC 6 cut(s) 690, 987, 1176, 1782, 1881, 1995
PstI CTGCAG 1 cut(s) 1619
PsuI RGATCY 6 cut(s) 985, 1174, 1325, 1717, 1879, 1993
PteI GCGCGC 1 cut(s) 327
RsaI GTAC 6 cut(s) 617, 785, 1279, 1347, 1418, 1929
RsaNI GTAC 6 cut(s) 616, 784, 1278, 1346, 1417, 1928
RseI CAYNNNNRTG 3 cut(s) 279, 1133, 1224
SacI GAGCTC 1 cut(s) 1807
SalI GTCGAC 2 cut(s) 58, 1634
SaqAI TTAA 9 cut(s) 48, 444, 509, 567, 780, 896, 1143, 1365, 1503
SatI GCNGC 5 cut(s) 28, 143, 479, 1485, 1587
ScaI AGTACT 2 cut(s) 1347, 1929
SchI GAGTC 2 cut(s) 282, 1581
ScrFI CCNGG 1 cut(s) 1998
SduI GDGCHC 1 cut(s) 1807
SfaNI GCATC 7 cut(s) 280, 445, 538, 940, 1432, 1443, 1761
SfcI CTRYAG 3 cut(s) 552, 1615, 2043
SfuI TTCGAA 1 cut(s) 1377
SmiMI CAYNNNNRTG 3 cut(s) 279, 1133, 1224
SphI GCATGC 1 cut(s) 1710
SsiI CCGC 4 cut(s) 138, 463, 1484, 1896
SspMI CTAG 5 cut(s) 86, 146, 404, 881, 1116
SstI GAGCTC 1 cut(s) 1807
StyD4I CCNGG 1 cut(s) 1996
StyI CCWWGG 3 cut(s) 207, 648, 1321
TaaI ACNGT 4 cut(s) 54, 190, 788, 1277
TaiI ACGT 6 cut(s) 48, 114, 528, 605, 707, 2090
TatI WGTACW 3 cut(s) 1345, 1416, 1927
TauI GCSGC 1 cut(s) 1487
TfiI GAWTC 5 cut(s) 237, 794, 803, 1379, 1603
Tru1I TTAA 9 cut(s) 48, 444, 509, 567, 780, 896, 1143, 1365, 1503
Tru9I TTAA 9 cut(s) 48, 444, 509, 567, 780, 896, 1143, 1365, 1503
TscAI CASTG 2 cut(s) 247, 1444
TseFI GTSAC 2 cut(s) 1205, 1249
TseI GCWGC 4 cut(s) 27, 142, 478, 1586
Tsp45I GTSAC 2 cut(s) 1205, 1249
TspGWI ACGGA 2 cut(s) 404, 1793
TspRI CASTG 2 cut(s) 247, 1444
Van91I CCANNNNNTGG 1 cut(s) 1663
VspI ATTAAT 1 cut(s) 1503
XapI RAATTY 4 cut(s) 827, 907, 960, 1650
XceI RCATGY 1 cut(s) 1710
XmiI GTMKAC 3 cut(s) 59, 970, 1635
XmnI GAANNNNTTC 3 cut(s) 164, 561, 1652
XspI CTAG 5 cut(s) 86, 146, 404, 881, 1116
ZrmI AGTACT 2 cut(s) 1347, 1929
Zsp2I ATGCAT 2 cut(s) 273, 1712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.