Rroxscaffold_4G00279620

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015712
Physical Location & Seq
Forward (+)
2365625 .. 2367817
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279620.1

Sequence Viewer

Length: 2193 bp
ATGCTGGTACTCAAAACACTGAAGCAAACCCAATGGAAACAAAACCTCAAACACTTCTCAACCCTTTACAAACCACCAAAAACTGACCTCCCCACCATAATTTCCAACAACATTTCCATAACCAACCGCTGCAAAACCGGCCAACTAGACATTGCTCGCAAACTATTCGACGAAATGCCCCACCGAACCGTCGTCTCATGGAACACCATGATTTCCGGGTACTCAAAGTGGGGCAGGTTCGGGGACGCTCTTTTTTTGGTTTCGGCTATGCATCGTGGTGGTAATGTAGGACCAAATGATTCCACCGTAACAACGGTGCTTGGAGCGTGCGCGCGTTCCGGGTGTTTGAGGGAGGGAATGGAGGTGCATTGTTTGGTGGTGAAGTCCGGGTTGGAGAGGTTTGAGATTCTGGGGAGTTCGTTGTTGTGTTTTTACGCTAGCTGTTTGAAAATTGGGGATGCTGAGCGGGTTTTTGAGGAGTTGCGTGGGGGGAATGAGTTGATGTGGGGGGTGATGCTGGTTGGTTATGTGCAATGTAACTTGATGGAGAGTGCTGTGGAGTTGTTTGAGAGGATGCCGAAGAAGGATGTTGCGGCGTGGAGTAGTTTGATTTCGGGGTATGTGAAGAGGGAAGATGGGTGTGAGAGGGCCTTGGAGTTGTTTGGGTTGATGAGGGAGAGTGGTGAGGTGGTGCCGAATGAGTTTACTTTCGACTCTGTTGTAAGGGCTTGTGGGAAACTGGGAGTGTTGTGGGTAGGGATGGTTATTCATGGCCTTTCAGTGAAATGTGGTGTTGATTTTGATGTATTTGTTAGTGTTGCGTTGATAGAGTTCTATAGTGATTGCCAAGCTGTGAACTTTGCCAAGAGAGTTTATGAAGGAATGGAGAACCCGAGTTTAAATGCTTCCAATGCATATATAGGGAGGCTTGTATCGATGGGTAGGATTGAAGATGCAGAGAGAGTTTTTGATGGAGTGAAAGAGAAGGATTCAGTTTCGTACAATTTGATGATTAAAGGTTATGCGATGAGGGATCAAGTTGATGAGGCAAAGAGGTTATTTGAGTGTATGAAGCACAGAACTATAGTTTCTTCCAATACAATGATTTCTGTGTACTCCAGGAATGGTGAGATTGATAAGGCTTTACAGCTTTTTGAAGAAACGAAAGGGGAAAGAGACCATGTGACATGGAGTGCCATGATGTCGGGTTATATTCATAATCAGCATCATGAGGAGGCTCTGGAACTATATGTGACAATGTGCAGATTATCAATAGATCGTACAAGATCAACATTCGCTGCTCTATTTCATGCCTGTTCATGCCTTGGTTCTCTTGAGTTGGGACAAGTGCTCCATACCCAGTTGATCAAGACACCATTTGAATCGAATGTGTATGTTGGAACTTCTCTAATTGATATGTATTCGAAATGCGGGTGCATCACTGATGCAGAAACATCCTTTAACAGCATTACTTCACCCAATGTGGCAGCTTGGACAGCTCTCATTAATGGGTGTGCACAACATGGACTTGGCTCTGAGGCAGTTTTGTTGTTTGAGAGAATGTTAAAGCAAGGATTCATCCCTAATGCTGCTACTGTTTTTGGGGTTCTGTCTGCCTGCAATCATTCTGGCCTAGTAAATGAAGGGAGGAGAATATATGACTTGATGGAAAAAAGTTATGGGATAAACCCAAGTTTGGAACACTGTGCATGCATAGTAGATCTTCTTGGTCGGTCTGGCCATCTACAAGAAGCTATGGATTTTATTGAAGAAATGGCCATTGAACCAGATGGGGTTATCTGGGGAGCAATGCTCAATGCGTGTTGGTTGTGGATGGACACAGAACTCGCTGAGCAGGTAGCTGAGAAAATGTGTAGTTTGGATCCCAAGCCACTATCTGCTTATGTAATTTTATCCAACATATATGCTGTACAGGGGAAGTTTGAGGAGAAGATCAACGCTAGAAACAGATTGAGAAAATTAAAAGCAAAAAAGGATCCTGGATGCAGTTGGATTCGGCTGAATTTCCAAGTTCATCAATTCACTGTACAAGATACTAACCATCCTCATTGTACCATGATTTACGAAACTTTGGAGCATCTGACAGCAAATATGAACTCTATTGTTGAAATTGGTTCTGTTTATATGCCAACAGTAAACTCTAGTTCTGTCTATGCAACATATATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

730

Amino Acids

81.65

Weight (kDa)

5.96

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 112 8.1e-08 PPR repeat family
PPR PF01535 65 - 94 8.4e-06 PPR repeat
PPR_2 PF13041 195 - 246 3.4e-06 PPR repeat family
PPR_2 PF13041 329 - 361 2.4e-06 PPR repeat family
PPR PF01535 332 - 360 1.5e-06 PPR repeat
PPR PF01535 363 - 389 5.8e-06 PPR repeat
PPR_2 PF13041 393 - 440 1.9e-07 PPR repeat family
PPR_2 PF13041 493 - 540 1.6e-08 PPR repeat family
PPR PF01535 497 - 526 3.4e-07 PPR repeat
E_motif PF20431 613 - 672 2.2e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 225, 1846
AccB1I GGYRCC 1 cut(s) 691
AccBSI CCGCTC 1 cut(s) 466
AccII CGCG 2 cut(s) 332, 334
AciI CCGC 4 cut(s) 127, 466, 593, 1431
AclWI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
AcoI YGGCCR 3 cut(s) 139, 1738, 1776
AcsI RAATTY 1 cut(s) 2023
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 8 cut(s) 9, 221, 1001, 1115, 1282, 1932, 2049, 2074
AfiI CCNNNNNNNGG 1 cut(s) 1696
AgsI TTSAA 8 cut(s) 448, 950, 1157, 1382, 1769, 1784, 2129, 2189
AjnI CCWGG 2 cut(s) 1118, 1999
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 7 cut(s) 441, 851, 1150, 1490, 1499, 1754, 1862
AluI AGCT 7 cut(s) 441, 851, 1150, 1490, 1499, 1754, 1862
Alw21I GWGCWC 2 cut(s) 1353, 1519
Alw26I GTCTC 2 cut(s) 199, 1170
Alw44I GTGCAC 1 cut(s) 1515
AlwI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
Ama87I CYCGRG 1 cut(s) 892
AoxI GGCC 6 cut(s) 139, 648, 772, 1630, 1738, 1776
ApaLI GTGCAC 1 cut(s) 1515
ApeKI GCWGC 4 cut(s) 129, 1298, 1487, 1589
ApoI RAATTY 1 cut(s) 2023
AseI ATTAAT 1 cut(s) 1506
AspLEI GCGC 2 cut(s) 332, 334
AspS9I GGNCC 2 cut(s) 290, 648
AsuC2I CCSGG 3 cut(s) 217, 340, 388
AsuHPI GGTGA 5 cut(s) 391, 523, 695, 1139, 1467
AsuII TTCGAA 1 cut(s) 1424
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 1519
BalI TGGCCA 2 cut(s) 1740, 1778
BamHI GGATCC 2 cut(s) 1882, 1996
BanI GGYRCC 1 cut(s) 691
Bbv12I GWGCWC 2 cut(s) 1353, 1519
BbvI GCAGC 4 cut(s) 116, 1285, 1499, 1576
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 1120, 2001
BclI TGATCA 1 cut(s) 1365
BcnI CCSGG 3 cut(s) 217, 340, 388
BcoDI GTCTC 2 cut(s) 199, 1170
BfaI CTAG 5 cut(s) 146, 438, 1634, 1962, 2163
BfmI CTRYAG 2 cut(s) 835, 1083
BfuAI ACCTGC 2 cut(s) 225, 1846
BglII AGATCT 1 cut(s) 1720
BisI GCNGC 5 cut(s) 130, 594, 1299, 1488, 1590
BlpI GCTNAGC 2 cut(s) 462, 1851
BlsI GCNGC 5 cut(s) 131, 595, 1300, 1489, 1591
Bme1390I CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 2 cut(s) 290, 648
BmiI GGNNCC 3 cut(s) 693, 1884, 1998
BmrFI CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
BmrI ACTGGG 2 cut(s) 749, 1354
BmtI GCTAGC 1 cut(s) 441
BmuI ACTGGG 2 cut(s) 749, 1354
BplI GAGNNNNNCTC 2 cut(s) 1797, 1829
BpmI CTGGAG 1 cut(s) 1102
Bpu1102I GCTNAGC 2 cut(s) 462, 1851
Bpu14I TTCGAA 1 cut(s) 1424
BpuEI CTTGAG 1 cut(s) 1355
BpuMI CCSGG 3 cut(s) 217, 340, 388
Bsa29I ATCGAT 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 2 cut(s) 651, 1324
BsaXI ACNNNNNCTCC 2 cut(s) 1335, 1365
Bsc4I CCNNNNNNNGG 1 cut(s) 1696
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 744, 1360
Bse3DI GCAATG 3 cut(s) 150, 539, 1815
BseBI CCWGG 2 cut(s) 1120, 2001
BseCI ATCGAT 1 cut(s) 935
BseDI CCNNGG 2 cut(s) 651, 1324
BseGI GGATG 9 cut(s) 463, 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BseLI CCNNNNNNNGG 1 cut(s) 1696
BseMI GCAATG 3 cut(s) 150, 539, 1815
BseMII CTCAG 4 cut(s) 453, 1527, 1842, 1854
BseNI ACTGG 2 cut(s) 744, 1360
BsePI GCGCGC 1 cut(s) 330
BseRI GAGGAG 4 cut(s) 491, 1247, 1663, 1961
BseSI GKGCMC 1 cut(s) 1519
BseXI GCAGC 4 cut(s) 116, 1285, 1499, 1576
BsgI GTGCAG 1 cut(s) 1282
Bsh1236I CGCG 2 cut(s) 332, 334
BshFI GGCC 6 cut(s) 141, 650, 774, 1632, 1740, 1778
BshNI GGYRCC 1 cut(s) 691
BshVI ATCGAT 1 cut(s) 935
BsiHKAI GWGCWC 2 cut(s) 1353, 1519
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 4 cut(s) 138, 216, 339, 387
BslFI GGGAC 2 cut(s) 257, 1356
BslI CCNNNNNNNGG 1 cut(s) 1696
BsmAI GTCTC 2 cut(s) 199, 1170
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 257, 1356
BsnI GGCC 6 cut(s) 141, 650, 774, 1632, 1740, 1778
Bso31I GGTCTC 1 cut(s) 1170
BsoBI CYCGRG 1 cut(s) 892
Bsp119I TTCGAA 1 cut(s) 1424
Bsp1286I GDGCHC 2 cut(s) 1353, 1519
Bsp1407I TGTACA 2 cut(s) 1930, 2047
Bsp143I GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
Bsp1720I GCTNAGC 2 cut(s) 462, 1851
BspACI CCGC 4 cut(s) 127, 466, 593, 1431
BspANI GGCC 6 cut(s) 141, 650, 774, 1632, 1740, 1778
BspCNI CTCAG 4 cut(s) 454, 1528, 1843, 1855
BspDI ATCGAT 1 cut(s) 935
BspFNI CGCG 2 cut(s) 332, 334
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 3 cut(s) 693, 1884, 1998
BspMI ACCTGC 2 cut(s) 225, 1846
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
BspT104I TTCGAA 1 cut(s) 1424
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 1170
BsrBI CCGCTC 1 cut(s) 466
BsrDI GCAATG 3 cut(s) 150, 539, 1815
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 2 cut(s) 1930, 2047
BsrI ACTGG 2 cut(s) 744, 1360
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 651, 1324
BssHII GCGCGC 1 cut(s) 330
BssMI GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
BssT1I CCWWGG 2 cut(s) 651, 1324
Bst2UI CCWGG 2 cut(s) 1120, 2001
Bst4CI ACNGT 7 cut(s) 190, 307, 316, 1597, 1706, 2047, 2155
Bst6I CTCTTC 1 cut(s) 620
BstAUI TGTACA 2 cut(s) 1930, 2047
BstBI TTCGAA 1 cut(s) 1424
BstC8I GCNNGC 6 cut(s) 157, 328, 332, 439, 1618, 1711
BstDEI CTNAG 4 cut(s) 462, 1536, 1851, 1863
BstF5I GGATG 9 cut(s) 463, 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BstFNI CGCG 2 cut(s) 332, 334
BstHHI GCGC 2 cut(s) 332, 334
BstKTI GATC 8 cut(s) 1036, 1279, 1289, 1368, 1723, 1885, 1956, 1999
BstMAI GTCTC 2 cut(s) 199, 1170
BstMBI GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
BstMWI GCNNNNNNNGC 3 cut(s) 138, 911, 1496
BstNI CCWGG 2 cut(s) 1120, 2001
BstNSI RCATGY 1 cut(s) 1713
BstSCI CCNGG 5 cut(s) 215, 338, 386, 1118, 1999
BstSFI CTRYAG 2 cut(s) 835, 1083
BstSLI GKGCMC 1 cut(s) 1519
BstUI CGCG 2 cut(s) 332, 334
BstV1I GCAGC 4 cut(s) 116, 1285, 1499, 1576
BstX2I RGATCY 3 cut(s) 1720, 1882, 1996
BstYI RGATCY 3 cut(s) 1720, 1882, 1996
Bsu15I ATCGAT 1 cut(s) 935
BsuRI GGCC 6 cut(s) 141, 650, 774, 1632, 1740, 1778
BsuTUI ATCGAT 1 cut(s) 935
BtgZI GCGATG 1 cut(s) 1040
BtsCI GGATG 9 cut(s) 463, 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BtsIMutI CAGTG 5 cut(s) 17, 786, 1440, 1702, 2043
BveI ACCTGC 2 cut(s) 225, 1846
Cac8I GCNNGC 6 cut(s) 157, 328, 332, 439, 1618, 1711
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 2 cut(s) 332, 334
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 290, 648
ClaI ATCGAT 1 cut(s) 935
CseI GACGC 1 cut(s) 254
Csp6I GTAC 8 cut(s) 8, 220, 1000, 1114, 1281, 1931, 2048, 2073
CviQI GTAC 8 cut(s) 8, 220, 1000, 1114, 1281, 1931, 2048, 2073
DdeI CTNAG 4 cut(s) 462, 1536, 1851, 1863
DpnI GATC 8 cut(s) 1035, 1278, 1288, 1367, 1722, 1884, 1955, 1998
DpnII GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
DraI TTTAAA 1 cut(s) 900
EaeI YGGCCR 3 cut(s) 139, 1738, 1776
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 651, 1324
Eco31I GGTCTC 1 cut(s) 1170
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 892
EcoO109I RGGNCCY 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 1118, 1999
EcoT14I CCWWGG 2 cut(s) 651, 1324
EcoT22I ATGCAT 3 cut(s) 273, 916, 1715
ErhI CCWWGG 2 cut(s) 651, 1324
Esp3I CGTCTC 1 cut(s) 199
FaqI GGGAC 2 cut(s) 257, 1356
FauI CCCGC 2 cut(s) 459, 1424
FbaI TGATCA 1 cut(s) 1365
Fnu4HI GCNGC 5 cut(s) 130, 594, 1299, 1488, 1590
FokI GGATG 9 cut(s) 470, 586, 599, 772, 1441, 1565, 1846, 2016, 2049
Fsp4HI GCNGC 5 cut(s) 130, 594, 1299, 1488, 1590
FspBI CTAG 5 cut(s) 146, 438, 1634, 1962, 2163
GlaI GCGC 2 cut(s) 331, 333
GluI GCNGC 5 cut(s) 130, 594, 1299, 1488, 1590
GsuI CTGGAG 1 cut(s) 1102
HaeIII GGCC 6 cut(s) 141, 650, 774, 1632, 1740, 1778
HapII CCGG 4 cut(s) 138, 216, 339, 387
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 332, 334
Hin6I GCGC 2 cut(s) 330, 332
HinP1I GCGC 2 cut(s) 330, 332
HinfI GANTC 7 cut(s) 299, 406, 713, 989, 1382, 1575, 2014
HpaII CCGG 4 cut(s) 138, 216, 339, 387
HphI GGTGA 5 cut(s) 391, 523, 695, 1139, 1467
Hpy166II GTNNAC 5 cut(s) 705, 856, 1114, 1517, 2158
Hpy188I TCNGA 2 cut(s) 1537, 2103
Hpy188III TCNNGA 4 cut(s) 1229, 1241, 1334, 1369
Hpy8I GTNNAC 5 cut(s) 705, 856, 1114, 1517, 2158
Hpy99I CGWCG 2 cut(s) 173, 194
HpyAV CCTTC 4 cut(s) 577, 872, 979, 1637
HpyCH4III ACNGT 7 cut(s) 190, 307, 316, 1597, 1706, 2047, 2155
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 911, 1496
HpyF3I CTNAG 4 cut(s) 462, 1536, 1851, 1863
HspAI GCGC 2 cut(s) 330, 332
Ksp22I TGATCA 1 cut(s) 1365
Kzo9I GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
LmnI GCTCC 4 cut(s) 323, 1356, 1805, 2095
Lsp1109I GCAGC 4 cut(s) 116, 1285, 1499, 1576
MaeI CTAG 5 cut(s) 146, 438, 1634, 1962, 2163
MaeIII GTNAC 4 cut(s) 307, 536, 1183, 1252
MalI GATC 8 cut(s) 1035, 1278, 1288, 1367, 1722, 1884, 1955, 1998
MbiI CCGCTC 1 cut(s) 466
MboI GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
MboII GAAGA 9 cut(s) 592, 637, 644, 962, 1083, 1169, 1715, 1781, 1963
MflI RGATCY 3 cut(s) 1720, 1882, 1996
MhlI GDGCHC 2 cut(s) 1353, 1519
MlsI TGGCCA 2 cut(s) 1740, 1778
MluCI AATT 9 cut(s) 99, 450, 1003, 1410, 1908, 1979, 2023, 2039, 2130
MluNI TGGCCA 2 cut(s) 1740, 1778
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 5 cut(s) 129, 372, 1378, 1941, 1991
Mox20I TGGCCA 2 cut(s) 1740, 1778
Mph1103I ATGCAT 3 cut(s) 273, 916, 1715
MscI TGGCCA 2 cut(s) 1740, 1778
MseI TTAA 6 cut(s) 899, 1014, 1461, 1506, 1565, 1982
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 2 cut(s) 1740, 1778
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 4 cut(s) 138, 216, 339, 387
MspR9I CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
MvaI CCWGG 2 cut(s) 1120, 2001
MvnI CGCG 2 cut(s) 332, 334
MwoI GCNNNNNNNGC 3 cut(s) 138, 911, 1496
NciI CCSGG 3 cut(s) 217, 340, 388
NdeII GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
NheI GCTAGC 1 cut(s) 437
NlaIV GGNNCC 3 cut(s) 693, 1884, 1998
NmuCI GTSAC 2 cut(s) 1183, 1252
NsiI ATGCAT 3 cut(s) 273, 916, 1715
NspI RCATGY 1 cut(s) 1713
NspV TTCGAA 1 cut(s) 1424
PaeI GCATGC 1 cut(s) 1713
PagI TCATGA 1 cut(s) 1228
PauI GCGCGC 1 cut(s) 330
PfeI GAWTC 6 cut(s) 299, 406, 989, 1382, 1575, 2014
PfoI TCCNGGA 2 cut(s) 1118, 1999
PkrI GCNGC 5 cut(s) 131, 595, 1300, 1489, 1591
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PshBI ATTAAT 1 cut(s) 1506
Psp6I CCWGG 2 cut(s) 1118, 1999
PspGI CCWGG 2 cut(s) 1118, 1999
PspN4I GGNNCC 3 cut(s) 693, 1884, 1998
PspPI GGNCC 2 cut(s) 290, 648
PsuI RGATCY 3 cut(s) 1720, 1882, 1996
PteI GCGCGC 1 cut(s) 330
RsaI GTAC 8 cut(s) 9, 221, 1001, 1115, 1282, 1932, 2049, 2074
RsaNI GTAC 8 cut(s) 8, 220, 1000, 1114, 1281, 1931, 2048, 2073
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 6 cut(s) 899, 1014, 1461, 1506, 1565, 1982
SatI GCNGC 5 cut(s) 130, 594, 1299, 1488, 1590
Sau3AI GATC 8 cut(s) 1033, 1276, 1286, 1365, 1720, 1882, 1953, 1996
Sau96I GGNCC 2 cut(s) 290, 648
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
SduI GDGCHC 2 cut(s) 1353, 1519
SfcI CTRYAG 2 cut(s) 835, 1083
SfuI TTCGAA 1 cut(s) 1424
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
SphI GCATGC 1 cut(s) 1713
Sse9I AATT 9 cut(s) 99, 450, 1003, 1410, 1908, 1979, 2023, 2039, 2130
SsiI CCGC 4 cut(s) 127, 466, 593, 1431
SspMI CTAG 5 cut(s) 146, 438, 1634, 1962, 2163
StyD4I CCNGG 5 cut(s) 215, 338, 386, 1118, 1999
StyI CCWWGG 2 cut(s) 651, 1324
TaaI ACNGT 7 cut(s) 190, 307, 316, 1597, 1706, 2047, 2155
TaqI TCGA 5 cut(s) 168, 711, 935, 1385, 1424
TaqII GACCGA 1 cut(s) 1722
TasI AATT 9 cut(s) 99, 450, 1003, 1410, 1908, 1979, 2023, 2039, 2130
TatI WGTACW 3 cut(s) 1113, 1930, 2047
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 6 cut(s) 299, 406, 989, 1382, 1575, 2014
Tru1I TTAA 6 cut(s) 899, 1014, 1461, 1506, 1565, 1982
Tru9I TTAA 6 cut(s) 899, 1014, 1461, 1506, 1565, 1982
TscAI CASTG 5 cut(s) 24, 786, 1447, 1709, 2050
TseFI GTSAC 2 cut(s) 1183, 1252
TseI GCWGC 4 cut(s) 129, 1298, 1487, 1589
Tsp45I GTSAC 2 cut(s) 1183, 1252
TspRI CASTG 5 cut(s) 24, 786, 1447, 1709, 2050
VneI GTGCAC 1 cut(s) 1515
VpaK11BI GGWCC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 1506
XapI RAATTY 1 cut(s) 2023
XceI RCATGY 1 cut(s) 1713
XspI CTAG 5 cut(s) 146, 438, 1634, 1962, 2163
Zsp2I ATGCAT 3 cut(s) 273, 916, 1715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.