Rh1BG398200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015712
Physical Location & Seq
Reverse (-)
52229595 .. 52230817
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG398200.1

Sequence Viewer

Length: 1119 bp
ATGCTGGTACTCAAAACACTGAAGCAAACCCAATGGAAACAAAACCTCAAACACTTCTCGACCCTTTACAAACCACCAAAAACTGACCTCCCAGCAATAGTTTCCACCAACATTTCCATAACCAGCCACTGCAAAACCGGCCAACTCGACATTGCTCGCAAACTATTCGACGAAATGCCCCACCGAACCGTCGTCTCATGGAACGCCATGATTTCCGGGTACTCGAAGTGGGGCAGATTCGGGGACGCTCTGTTTTTGGCTTCGGCTATGCATCGTGGTGGTGGTAATGTAGGGCCAAATGATTCCACCGTAACATCAGTGCTTGGAGCGTGCGCGCGTTCCGGGTGTTTGAGGGAGGGAATGGAGGTGCATTGTTTGGTGGTGAAGTCCGGGTTGGAGAGGTTCGAGATTCTGGGGAGTTCGTTGCTGTGTTTTTACGCTAGCTGCTTGAAAATAGGGGATGCTGAGCGGGTTTTTGAGGAGTTGCGTGGGGGGAATGAGTTGTTGTGGGGGGTGATGCTGGTTGGTTATGTGCAATGTAACTTGATGGAGAGTGCTGTGGAGTTGTTTGAGAGGATGCCGAAGAAGGATGTTGCGGCGTGGAGTAGTTTGATTTCGGGGTTTGTGAAGAGGGAAGATGGGTGTGAGAGGGCGTTGGAGTTGTTTGGGTTGATGAGGGAGAGTGGTGAGGTGGGGCCGAATGAGTTTACTTTCGACTCTGTTGTAAGGGCTTGTGGGAAACTGGGAGTGTTGTGGGTAGGGATGGTTATTCATGGCCTTTCAGTGAAATGTGGTGTTGATTTTGATGTATTTGTTAGTGTTGCGTTGATAGAGTTCTATAGTGATTGCCAAGCTGTGGACTTTGCCAAGAGAGTTTATGAAGGAATGGAGAACCCGAGTTTAAATGCTTCCAATGCATATATAGGGAGGCTTGTATTGATGGGTAGGATTGAAGATGCAGAGAGAGTTTTTGATGGAGTGAAAGAGAAGGATTCAGTTTCATACAATTTGATGATTAAAGGTTATGCGATGATGGATCAAGTCAATGAGGCAAAGAGAAACGAAAGGGGAAAGAGACCATGTGACGTGGAGTGCCATGATGTCGGCTTATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

372

Amino Acids

41.27

Weight (kDa)

6.21

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 113 1.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 856
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 335, 337
AciI CCGC 2 cut(s) 469, 596
AclWI GGATC 1 cut(s) 1044
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 2 cut(s) 9, 221
AfiI CCNNNNNNNGG 1 cut(s) 856
AgsI TTSAA 2 cut(s) 451, 953
AjiI CACGTC 1 cut(s) 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 2 cut(s) 444, 854
AluI AGCT 2 cut(s) 444, 854
Alw26I GTCTC 2 cut(s) 199, 1069
AlwI GGATC 1 cut(s) 1044
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 4 cut(s) 139, 293, 695, 775
ApeKI GCWGC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 335, 337
AspS9I GGNCC 2 cut(s) 293, 695
AsuC2I CCSGG 3 cut(s) 217, 343, 391
AsuHPI GGTGA 3 cut(s) 394, 526, 698
AsuNHI GCTAGC 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 895
BbvI GCAGC 1 cut(s) 431
BccI CCATC 6 cut(s) 541, 632, 757, 934, 968, 1027
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BcnI CCSGG 3 cut(s) 217, 343, 391
BcoDI GTCTC 2 cut(s) 199, 1069
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 838
BisI GCNGC 2 cut(s) 445, 597
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 2 cut(s) 446, 598
Bme1390I CCNGG 3 cut(s) 217, 343, 391
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 1087
BmgT120I GGNCC 2 cut(s) 293, 695
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 3 cut(s) 217, 343, 391
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 5 cut(s) 280, 451, 507, 567, 946
BmtI GCTAGC 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 752
Bpu1102I GCTNAGC 1 cut(s) 465
BpuMI CCSGG 3 cut(s) 217, 343, 391
BsaI GGTCTC 1 cut(s) 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 2 cut(s) 150, 542
BseGI GGATG 4 cut(s) 466, 582, 595, 768
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMI GCAATG 2 cut(s) 150, 542
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 747
BsePI GCGCGC 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 1 cut(s) 431
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 335, 337
BshFI GGCC 4 cut(s) 141, 295, 697, 777
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 4 cut(s) 138, 216, 342, 390
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 2 cut(s) 199, 1069
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 4 cut(s) 141, 295, 697, 777
Bso31I GGTCTC 1 cut(s) 1069
BsoBI CYCGRG 1 cut(s) 895
Bsp143I GATC 1 cut(s) 1036
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 2 cut(s) 469, 596
BspANI GGCC 4 cut(s) 141, 295, 697, 777
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 2 cut(s) 335, 337
BspLI GGNNCC 1 cut(s) 696
BspOI GCTAGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 1044
BspTNI GGTCTC 1 cut(s) 1069
BsrBI CCGCTC 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 150, 542
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 1 cut(s) 137
BssHII GCGCGC 1 cut(s) 333
BssMI GATC 1 cut(s) 1036
Bst4CI ACNGT 2 cut(s) 190, 310
Bst6I CTCTTC 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 157, 331, 335, 442
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 4 cut(s) 466, 582, 595, 768
BstFNI CGCG 2 cut(s) 335, 337
BstHHI GCGC 2 cut(s) 335, 337
BstKTI GATC 1 cut(s) 1039
BstMAI GTCTC 2 cut(s) 199, 1069
BstMBI GATC 1 cut(s) 1036
BstMWI GCNNNNNNNGC 2 cut(s) 138, 914
BstSCI CCNGG 3 cut(s) 215, 341, 389
BstSFI CTRYAG 1 cut(s) 838
BstUI CGCG 2 cut(s) 335, 337
BstV1I GCAGC 1 cut(s) 431
BsuRI GGCC 4 cut(s) 141, 295, 697, 777
BtgZI GCGATG 1 cut(s) 1043
BtrI CACGTC 1 cut(s) 1087
BtsCI GGATG 4 cut(s) 466, 582, 595, 768
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 4 cut(s) 17, 127, 324, 789
Cac8I GCNNGC 4 cut(s) 157, 331, 335, 442
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 2 cut(s) 335, 337
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 293, 695
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 8, 220
CviAII CATG 5 cut(s) 198, 208, 773, 1080, 1097
CviQI GTAC 2 cut(s) 8, 220
DdeI CTNAG 1 cut(s) 465
DpnI GATC 1 cut(s) 1038
DpnII GATC 1 cut(s) 1036
DraI TTTAAA 1 cut(s) 903
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco31I GGTCTC 1 cut(s) 1069
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 895
EcoT22I ATGCAT 2 cut(s) 273, 919
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 5 cut(s) 201, 211, 776, 1083, 1100
FaqI GGGAC 1 cut(s) 257
FatI CATG 5 cut(s) 197, 207, 772, 1079, 1096
FauI CCCGC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 445, 597
FokI GGATG 4 cut(s) 473, 589, 602, 775
Fsp4HI GCNGC 2 cut(s) 445, 597
FspBI CTAG 1 cut(s) 441
GlaI GCGC 2 cut(s) 334, 336
GluI GCNGC 2 cut(s) 445, 597
GsaI CCCAGC 1 cut(s) 95
HaeIII GGCC 4 cut(s) 141, 295, 697, 777
HapII CCGG 4 cut(s) 138, 216, 342, 390
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 335, 337
Hin1II CATG 5 cut(s) 201, 211, 776, 1083, 1100
Hin6I GCGC 2 cut(s) 333, 335
HinP1I GCGC 2 cut(s) 333, 335
HinfI GANTC 5 cut(s) 237, 302, 409, 716, 992
HpaII CCGG 4 cut(s) 138, 216, 342, 390
HphI GGTGA 3 cut(s) 394, 526, 698
Hpy166II GTNNAC 2 cut(s) 708, 859
Hpy188III TCNNGA 2 cut(s) 58, 406
Hpy8I GTNNAC 2 cut(s) 708, 859
Hpy99I CGWCG 2 cut(s) 173, 194
HpyAV CCTTC 3 cut(s) 580, 875, 982
HpyCH4III ACNGT 2 cut(s) 190, 310
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 6 cut(s) 132, 271, 370, 535, 917, 959
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 914
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 1086
Hsp92II CATG 5 cut(s) 201, 211, 776, 1083, 1100
HspAI GCGC 2 cut(s) 333, 335
Kzo9I GATC 1 cut(s) 1036
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 9 cut(s) 105, 136, 151, 229, 355, 398, 403, 506, 728
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 5 cut(s) 280, 451, 507, 567, 946
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 3 cut(s) 310, 539, 1082
MalI GATC 1 cut(s) 1038
MbiI CCGCTC 1 cut(s) 469
MboI GATC 1 cut(s) 1036
MboII GAAGA 4 cut(s) 595, 640, 647, 965
MluCI AATT 1 cut(s) 1006
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 375, 636
Mph1103I ATGCAT 2 cut(s) 273, 919
MseI TTAA 2 cut(s) 902, 1017
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 138, 216, 342, 390
MspR9I CCNGG 3 cut(s) 217, 343, 391
MvnI CGCG 2 cut(s) 335, 337
MwoI GCNNNNNNNGC 2 cut(s) 138, 914
NciI CCSGG 3 cut(s) 217, 343, 391
NdeII GATC 1 cut(s) 1036
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 5 cut(s) 201, 211, 776, 1083, 1100
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 1 cut(s) 1082
NsiI ATGCAT 2 cut(s) 273, 919
PauI GCGCGC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 237, 302, 409, 992
PflMI CCANNNNNTGG 1 cut(s) 856
PkrI GCNGC 2 cut(s) 446, 598
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 2 cut(s) 293, 695
PstNI CAGNNNCTG 1 cut(s) 129
PteI GCGCGC 1 cut(s) 333
RsaI GTAC 2 cut(s) 9, 221
RsaNI GTAC 2 cut(s) 8, 220
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 902, 1017
SatI GCNGC 2 cut(s) 445, 597
Sau3AI GATC 1 cut(s) 1036
Sau96I GGNCC 2 cut(s) 293, 695
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 217, 343, 391
SetI ASST 9 cut(s) 48, 90, 369, 404, 446, 693, 856, 1024, 1089
SfaNI GCATC 5 cut(s) 280, 451, 507, 567, 946
SfcI CTRYAG 1 cut(s) 838
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 1 cut(s) 1006
SsiI CCGC 2 cut(s) 469, 596
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 3 cut(s) 215, 341, 389
TaaI ACNGT 2 cut(s) 190, 310
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 6 cut(s) 59, 147, 168, 224, 405, 714
TasI AATT 1 cut(s) 1006
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 4 cut(s) 237, 302, 409, 992
Tru1I TTAA 2 cut(s) 902, 1017
Tru9I TTAA 2 cut(s) 902, 1017
TscAI CASTG 4 cut(s) 24, 134, 324, 789
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 1 cut(s) 444
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 4 cut(s) 761, 894, 990, 1104
TspRI CASTG 4 cut(s) 24, 134, 324, 789
Van91I CCANNNNNTGG 1 cut(s) 856
XspI CTAG 1 cut(s) 441
Zsp2I ATGCAT 2 cut(s) 273, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.