RchiOBHm_Chr1g0380161

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015712
Physical Location & Seq
Reverse (-)
65906766 .. 65908963
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60346

Sequence Viewer

Length: 2136 bp
ATGCTGGTACTCAAAACACTGAAGCAAACCCAATGGAAACAAAACCTCAAACGCTTCTCGACCCTTTACAAACCACCAAAAACTGACCTCCCCGCAATAGTTTCCACCAACATTTCCATAACTAGCCACTGCAAAACCGGCCAACTCGACATTGCTCGCAAACTATTCGACGAAATGCCCCACCGAACCGTCGTCTCATGGAACGCCATGATTTCCGGGTACTCGAAGTGGGGCAGATTCGGGGACGCTCTGTTTTTGGTTTCGGCTATGCATCGTGGTGGTGGTGGTAATGTAGGACCAAATGATTCCACCGTAACATCAGCGCTTGGAGCGTGCGCGCGTTCCGGGTGTTTGAGGGAGGGAATGGAGGTGCATTGTTTGGTGGTGAAGTCCGGGTTGGAGAGGTTCGAGATTCTGGGGAGTTCGTTGTTGTGTTTTTACGCTAGCTGTTTGAAAATTGGGGAAGCTGAGCGGGTTTTTGAGGAGTTGCGTGGGGGGAATGAGTTGTTGTGGGGGATGCCGAAGAAGGATGTTGCGGCGTGGAGTAGTTTGATTTCGGGGTATGTGAAGAGGGAAGATGGGTGTGAGAGGGCGTTGGAGTTGTTTGGGTTGATGAGGGAGAGTGGTGAGGTGGTGCCGAATGAGTTTACTTTCGACTCTGTTGTAAGGGCTTGTGGGAAACTGGGAGTGCTGTGGGTAGGGATGGTTATTCATGGCCTTTCAGTGAAATGTGGTGTTGATTTTGATGTATTTGTTAGTGTTGCGTTGATAGAGTTCTATAGTGATTGCCAAGCTGTGGACTTTGCCAAGAGAGTTTATGAAGGAATGGAGAACCCGAGTTTAAATGCTTCCAATGCATATATAGGGAGGCTTGTATCGATGGGTAGGATTGAAGATGCAGAGAGAGTTTTTGATGGAGTGAAAGAGAAGGATTCAGTTTCATACAATTTGATGATTAAAGGTTATGCGATGAGGGATCAAGTCAATGAGGCAAAGAGGTTATTTGAGTGTATGAAGCACAGAACTATAGTTTCTTCCAATACAATGATTTCTGTGTACTCCAGGAATGGTGAGATTGATAAGGCTTTACAGCTTTTTGAAGAAACGAAAGGGGAAAGAGACCATGTGACATGGAGTGCCATGATGTCGGGTTATATTCATAATCAGCAACATGAGGAGGCTCTGGAACTATATGTTACAATGTGCAGATTATCAATAGACCGTACAAGATCAACATTCGCTGCTCTATTTCATGCCTGTTCATGCCTTGGTTCTCTTGAGTTGGGACAAGTGCTCCATGCCCAGTTGATCAAGACACCATTTGAATCGAATGTATATGTTGGAACTTCTCTAATTGATATGTATTCGAAATGCGGGTGCATCACTGATGCAGAAACATCCTTTAACAGCATTACTTCACCCAATGTGGCAGCTTGGACAGCTCTCATTAATGGGTGTGCACAACATGGGCTTGGCTCTGAGGCAGTTTTGTTGTTTGAGAGAATGTTAAAGCAAGGATTCATCCCTAATGCTGCTACTGTTTTTGGGGTTCTGTCTGCCTGCAATCATTCTGGCCTAGTCAATGAAGGCAGGAGAATATATGACTTAATAGAAAAAAGTTATGGGATAAACCCAAGTTTGGAACACTGTGCATGCATAGTAGATCTTCTTGGTCGGTCTGGCCGTCTACAAGAAGCTATGGATTTTATTGAAGAAATGACCGTTGAACCAGATGGAGTTATCTGGGGAGCAATGCTCAATGCGTGTTGGTTGTGGATGGACACAGAACTCGCTGAGCAGGTAGCTGAGAAAATGTGTAGTTTGGATCCCAAGCCAGTATCTGCTTATGTAATTTTATCCAACATATATGCTGTACAGGGGAAGTTTGAGGAGAAGATCAACGCTAGAAACAGATTGAGAAAATTGAAAGCAAAAAAGGATCCTGGATGCAGTTGGATTCGGCTGAATTTCCAAGTTCATCAATTCTCTGTACAAGATACTAACCATCCTCATTGTACCATGATTTACAAAACTTTGGAGCATCTGACAGCAAATATGAACTCTATTGTTGAATTTGGTTCTGTTTATATGCCAACAGTAAACTCTAGTTCTATCTATGCAACATATATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

711

Amino Acids

79.17

Weight (kDa)

6.25

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 176 - 227 3.2e-06 PPR repeat family
PPR_2 PF13041 310 - 342 3.2e-06 PPR repeat family
PPR PF01535 313 - 341 6.5e-06 PPR repeat
PPR PF01535 344 - 370 5.6e-06 PPR repeat
PPR_2 PF13041 374 - 421 1.4e-07 PPR repeat family
PPR_2 PF13041 474 - 521 1.5e-08 PPR repeat family
PPR PF01535 478 - 507 3.3e-07 PPR repeat
E_motif PF20431 594 - 653 1.5e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1789
AccB1I GGYRCC 1 cut(s) 634
AccB7I CCANNNNNTGG 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 1 cut(s) 1687
AccII CGCG 2 cut(s) 338, 340
AciI CCGC 4 cut(s) 93, 472, 536, 1374
AclWI GGATC 5 cut(s) 984, 1820, 1833, 1934, 1947
AcoI YGGCCR 2 cut(s) 139, 1681
AcsI RAATTY 2 cut(s) 1966, 2072
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 7 cut(s) 9, 221, 1058, 1225, 1875, 1992, 2017
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 796, 1639
AgsI TTSAA 8 cut(s) 454, 893, 1100, 1325, 1712, 1727, 1927, 2072
AjnI CCWGG 2 cut(s) 1061, 1942
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 8 cut(s) 447, 467, 794, 1093, 1433, 1442, 1697, 1805
AluI AGCT 8 cut(s) 447, 467, 794, 1093, 1433, 1442, 1697, 1805
Alw21I GWGCWC 2 cut(s) 1296, 1462
Alw26I GTCTC 2 cut(s) 199, 1113
Alw44I GTGCAC 1 cut(s) 1458
AlwI GGATC 5 cut(s) 984, 1820, 1833, 1934, 1947
AlwNI CAGNNNCTG 1 cut(s) 1841
Ama87I CYCGRG 1 cut(s) 835
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 4 cut(s) 139, 715, 1573, 1681
ApaLI GTGCAC 1 cut(s) 1458
ApeKI GCWGC 3 cut(s) 1241, 1430, 1532
ApoI RAATTY 2 cut(s) 1966, 2072
AseI ATTAAT 1 cut(s) 1449
AspLEI GCGC 3 cut(s) 325, 338, 340
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 3 cut(s) 217, 346, 394
AsuHPI GGTGA 4 cut(s) 397, 638, 1082, 1410
AsuII TTCGAA 1 cut(s) 1367
AsuNHI GCTAGC 1 cut(s) 443
AvaI CYCGRG 1 cut(s) 835
AvaII GGWCC 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 1462
BamHI GGATCC 2 cut(s) 1825, 1939
BanI GGYRCC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 1296, 1462
BbvI GCAGC 3 cut(s) 1228, 1442, 1519
BccI CCATC 7 cut(s) 572, 697, 874, 908, 1727, 1771, 2013
BceAI ACGGC 1 cut(s) 1668
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 1063, 1944
BclI TGATCA 1 cut(s) 1308
BcnI CCSGG 3 cut(s) 217, 346, 394
BcoDI GTCTC 2 cut(s) 199, 1113
BfaI CTAG 5 cut(s) 123, 444, 1577, 1905, 2106
BfmI CTRYAG 2 cut(s) 778, 1026
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 1789
BglII AGATCT 1 cut(s) 1663
BisI GCNGC 4 cut(s) 537, 1242, 1431, 1533
BlpI GCTNAGC 2 cut(s) 468, 1794
BlsI GCNGC 4 cut(s) 538, 1243, 1432, 1534
Bme1390I CCNGG 5 cut(s) 217, 346, 394, 1063, 1944
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 835
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 3 cut(s) 636, 1827, 1941
BmrFI CCNGG 5 cut(s) 217, 346, 394, 1063, 1944
BmrI ACTGGG 2 cut(s) 692, 1297
BmsI GCATC 7 cut(s) 280, 507, 886, 1378, 1389, 1937, 2050
BmtI GCTAGC 1 cut(s) 447
BmuI ACTGGG 2 cut(s) 692, 1297
BplI GAGNNNNNCTC 2 cut(s) 1740, 1772
BpmI CTGGAG 1 cut(s) 1045
Bpu1102I GCTNAGC 2 cut(s) 468, 1794
Bpu14I TTCGAA 1 cut(s) 1367
BpuEI CTTGAG 1 cut(s) 1298
BpuMI CCSGG 3 cut(s) 217, 346, 394
Bsa29I ATCGAT 1 cut(s) 878
BsaI GGTCTC 1 cut(s) 1113
BsaJI CCNNGG 1 cut(s) 1267
BsaXI ACNNNNNCTCC 2 cut(s) 1278, 1308
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 1639
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 687, 1303, 1835
Bse3DI GCAATG 2 cut(s) 150, 1758
BseBI CCWGG 2 cut(s) 1063, 1944
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 1 cut(s) 1267
BseGI GGATG 8 cut(s) 522, 535, 708, 1397, 1521, 1782, 1952, 2005
BseLI CCNNNNNNNGG 2 cut(s) 796, 1639
BseMI GCAATG 2 cut(s) 150, 1758
BseMII CTCAG 4 cut(s) 459, 1470, 1785, 1797
BseNI ACTGG 3 cut(s) 687, 1303, 1835
BsePI GCGCGC 1 cut(s) 336
BseRI GAGGAG 3 cut(s) 497, 1190, 1904
BseSI GKGCMC 1 cut(s) 1462
BseXI GCAGC 3 cut(s) 1228, 1442, 1519
BsgI GTGCAG 1 cut(s) 1225
Bsh1236I CGCG 2 cut(s) 338, 340
BshFI GGCC 4 cut(s) 141, 717, 1575, 1683
BshNI GGYRCC 1 cut(s) 634
BshVI ATCGAT 1 cut(s) 878
BsiHKAI GWGCWC 2 cut(s) 1296, 1462
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 4 cut(s) 138, 216, 345, 393
BslFI GGGAC 2 cut(s) 257, 1299
BslI CCNNNNNNNGG 2 cut(s) 796, 1639
BsmAI GTCTC 2 cut(s) 199, 1113
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 257, 1299
BsnI GGCC 4 cut(s) 141, 717, 1575, 1683
Bso31I GGTCTC 1 cut(s) 1113
BsoBI CYCGRG 1 cut(s) 835
Bsp119I TTCGAA 1 cut(s) 1367
Bsp1286I GDGCHC 2 cut(s) 1296, 1462
Bsp1407I TGTACA 2 cut(s) 1873, 1990
Bsp143I GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
Bsp1720I GCTNAGC 2 cut(s) 468, 1794
BspACI CCGC 4 cut(s) 93, 472, 536, 1374
BspANI GGCC 4 cut(s) 141, 717, 1575, 1683
BspCNI CTCAG 4 cut(s) 460, 1471, 1786, 1798
BspDI ATCGAT 1 cut(s) 878
BspFNI CGCG 2 cut(s) 338, 340
BspLI GGNNCC 3 cut(s) 636, 1827, 1941
BspMI ACCTGC 1 cut(s) 1789
BspOI GCTAGC 1 cut(s) 447
BspPI GGATC 5 cut(s) 984, 1820, 1833, 1934, 1947
BspT104I TTCGAA 1 cut(s) 1367
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 1113
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 150, 1758
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 2 cut(s) 1873, 1990
BsrI ACTGG 3 cut(s) 687, 1303, 1835
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 1267
BssHII GCGCGC 1 cut(s) 336
BssMI GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
BssT1I CCWWGG 1 cut(s) 1267
Bst2UI CCWGG 2 cut(s) 1063, 1944
Bst4CI ACNGT 7 cut(s) 190, 313, 1223, 1540, 1649, 1723, 2098
Bst6I CTCTTC 1 cut(s) 563
BstAUI TGTACA 2 cut(s) 1873, 1990
BstBI TTCGAA 1 cut(s) 1367
BstC8I GCNNGC 6 cut(s) 157, 334, 338, 445, 1561, 1654
BstDEI CTNAG 4 cut(s) 468, 1479, 1794, 1806
BstF5I GGATG 8 cut(s) 522, 535, 708, 1397, 1521, 1782, 1952, 2005
BstFNI CGCG 2 cut(s) 338, 340
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 3 cut(s) 325, 338, 340
BstKTI GATC 7 cut(s) 979, 1232, 1311, 1666, 1828, 1899, 1942
BstMAI GTCTC 2 cut(s) 199, 1113
BstMBI GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
BstMWI GCNNNNNNNGC 4 cut(s) 138, 329, 854, 1439
BstNI CCWGG 2 cut(s) 1063, 1944
BstNSI RCATGY 1 cut(s) 1656
BstSCI CCNGG 5 cut(s) 215, 344, 392, 1061, 1942
BstSFI CTRYAG 2 cut(s) 778, 1026
BstSLI GKGCMC 1 cut(s) 1462
BstUI CGCG 2 cut(s) 338, 340
BstV1I GCAGC 3 cut(s) 1228, 1442, 1519
BstX2I RGATCY 3 cut(s) 1663, 1825, 1939
BstYI RGATCY 3 cut(s) 1663, 1825, 1939
Bsu15I ATCGAT 1 cut(s) 878
BsuRI GGCC 4 cut(s) 141, 717, 1575, 1683
BsuTUI ATCGAT 1 cut(s) 878
BtgZI GCGATG 1 cut(s) 983
BtsCI GGATG 8 cut(s) 522, 535, 708, 1397, 1521, 1782, 1952, 2005
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 5 cut(s) 17, 127, 729, 1383, 1645
BveI ACCTGC 1 cut(s) 1789
Cac8I GCNNGC 6 cut(s) 157, 334, 338, 445, 1561, 1654
CaiI CAGNNNCTG 1 cut(s) 1841
CfoI GCGC 3 cut(s) 325, 338, 340
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 878
CseI GACGC 1 cut(s) 254
Csp6I GTAC 7 cut(s) 8, 220, 1057, 1224, 1874, 1991, 2016
CviQI GTAC 7 cut(s) 8, 220, 1057, 1224, 1874, 1991, 2016
DdeI CTNAG 4 cut(s) 468, 1479, 1794, 1806
DpnI GATC 7 cut(s) 978, 1231, 1310, 1665, 1827, 1898, 1941
DpnII GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
DraI TTTAAA 1 cut(s) 843
EaeI YGGCCR 2 cut(s) 139, 1681
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 1267
Eco31I GGTCTC 1 cut(s) 1113
Eco47I GGWCC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 1061, 1942
EcoT14I CCWWGG 1 cut(s) 1267
EcoT22I ATGCAT 3 cut(s) 273, 859, 1658
ErhI CCWWGG 1 cut(s) 1267
Esp3I CGTCTC 1 cut(s) 199
FaqI GGGAC 2 cut(s) 257, 1299
FauI CCCGC 3 cut(s) 100, 465, 1367
FbaI TGATCA 1 cut(s) 1308
FblI GTMKAC 1 cut(s) 1687
Fnu4HI GCNGC 4 cut(s) 537, 1242, 1431, 1533
FokI GGATG 8 cut(s) 529, 542, 715, 1384, 1508, 1789, 1959, 1992
Fsp4HI GCNGC 4 cut(s) 537, 1242, 1431, 1533
FspBI CTAG 5 cut(s) 123, 444, 1577, 1905, 2106
GlaI GCGC 3 cut(s) 324, 337, 339
GluI GCNGC 4 cut(s) 537, 1242, 1431, 1533
GsuI CTGGAG 1 cut(s) 1045
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 4 cut(s) 141, 717, 1575, 1683
HapII CCGG 4 cut(s) 138, 216, 345, 393
HgaI GACGC 1 cut(s) 254
HhaI GCGC 3 cut(s) 325, 338, 340
Hin6I GCGC 3 cut(s) 323, 336, 338
HinP1I GCGC 3 cut(s) 323, 336, 338
HinfI GANTC 8 cut(s) 237, 305, 412, 656, 932, 1325, 1518, 1957
HpaII CCGG 4 cut(s) 138, 216, 345, 393
HphI GGTGA 4 cut(s) 397, 638, 1082, 1410
Hpy166II GTNNAC 6 cut(s) 648, 799, 1057, 1460, 1688, 2101
Hpy188I TCNGA 2 cut(s) 1480, 2046
Hpy188III TCNNGA 5 cut(s) 58, 409, 1184, 1277, 1312
Hpy8I GTNNAC 6 cut(s) 648, 799, 1057, 1460, 1688, 2101
Hpy99I CGWCG 2 cut(s) 173, 194
HpyAV CCTTC 4 cut(s) 520, 815, 922, 1580
HpyCH4III ACNGT 7 cut(s) 190, 313, 1223, 1540, 1649, 1723, 2098
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 329, 854, 1439
HpyF3I CTNAG 4 cut(s) 468, 1479, 1794, 1806
HspAI GCGC 3 cut(s) 323, 336, 338
Ksp22I TGATCA 1 cut(s) 1308
Kzo9I GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
LmnI GCTCC 4 cut(s) 329, 1299, 1748, 2038
Lsp1109I GCAGC 3 cut(s) 1228, 1442, 1519
LweI GCATC 7 cut(s) 280, 507, 886, 1378, 1389, 1937, 2050
MaeI CTAG 5 cut(s) 123, 444, 1577, 1905, 2106
MaeIII GTNAC 3 cut(s) 313, 1126, 1195
MalI GATC 7 cut(s) 978, 1231, 1310, 1665, 1827, 1898, 1941
MbiI CCGCTC 1 cut(s) 472
MboI GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
MboII GAAGA 9 cut(s) 535, 580, 587, 905, 1026, 1112, 1658, 1724, 1906
MflI RGATCY 3 cut(s) 1663, 1825, 1939
MhlI GDGCHC 2 cut(s) 1296, 1462
MluCI AATT 8 cut(s) 456, 946, 1353, 1851, 1922, 1966, 1982, 2072
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 5 cut(s) 378, 576, 1321, 1884, 1934
Mph1103I ATGCAT 3 cut(s) 273, 859, 1658
MseI TTAA 6 cut(s) 842, 957, 1404, 1449, 1508, 1607
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 138, 216, 345, 393
MspR9I CCNGG 5 cut(s) 217, 346, 394, 1063, 1944
MvaI CCWGG 2 cut(s) 1063, 1944
MvnI CGCG 2 cut(s) 338, 340
MwoI GCNNNNNNNGC 4 cut(s) 138, 329, 854, 1439
NciI CCSGG 3 cut(s) 217, 346, 394
NdeII GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
NheI GCTAGC 1 cut(s) 443
NlaIV GGNNCC 3 cut(s) 636, 1827, 1941
NmuCI GTSAC 1 cut(s) 1126
NsiI ATGCAT 3 cut(s) 273, 859, 1658
NspI RCATGY 1 cut(s) 1656
NspV TTCGAA 1 cut(s) 1367
PaeI GCATGC 1 cut(s) 1656
PauI GCGCGC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 1681
PfeI GAWTC 7 cut(s) 237, 305, 412, 932, 1325, 1518, 1957
PflMI CCANNNNNTGG 1 cut(s) 796
PfoI TCCNGGA 2 cut(s) 1061, 1942
PkrI GCNGC 4 cut(s) 538, 1243, 1432, 1534
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PshBI ATTAAT 1 cut(s) 1449
Psp6I CCWGG 2 cut(s) 1061, 1942
PspGI CCWGG 2 cut(s) 1061, 1942
PspN4I GGNNCC 3 cut(s) 636, 1827, 1941
PspPI GGNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 1841
PsuI RGATCY 3 cut(s) 1663, 1825, 1939
PteI GCGCGC 1 cut(s) 336
RsaI GTAC 7 cut(s) 9, 221, 1058, 1225, 1875, 1992, 2017
RsaNI GTAC 7 cut(s) 8, 220, 1057, 1224, 1874, 1991, 2016
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 6 cut(s) 842, 957, 1404, 1449, 1508, 1607
SatI GCNGC 4 cut(s) 537, 1242, 1431, 1533
Sau3AI GATC 7 cut(s) 976, 1229, 1308, 1663, 1825, 1896, 1939
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 5 cut(s) 217, 346, 394, 1063, 1944
SduI GDGCHC 2 cut(s) 1296, 1462
SfaNI GCATC 7 cut(s) 280, 507, 886, 1378, 1389, 1937, 2050
SfcI CTRYAG 2 cut(s) 778, 1026
SfuI TTCGAA 1 cut(s) 1367
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 1277
SmoI CTYRAG 1 cut(s) 1277
SphI GCATGC 1 cut(s) 1656
Sse9I AATT 8 cut(s) 456, 946, 1353, 1851, 1922, 1966, 1982, 2072
SsiI CCGC 4 cut(s) 93, 472, 536, 1374
SspMI CTAG 5 cut(s) 123, 444, 1577, 1905, 2106
StyD4I CCNGG 5 cut(s) 215, 344, 392, 1061, 1942
StyI CCWWGG 1 cut(s) 1267
TaaI ACNGT 7 cut(s) 190, 313, 1223, 1540, 1649, 1723, 2098
TaqI TCGA 9 cut(s) 59, 147, 168, 224, 408, 654, 878, 1328, 1367
TaqII GACCGA 1 cut(s) 1665
TasI AATT 8 cut(s) 456, 946, 1353, 1851, 1922, 1966, 1982, 2072
TatI WGTACW 3 cut(s) 1056, 1873, 1990
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 7 cut(s) 237, 305, 412, 932, 1325, 1518, 1957
Tru1I TTAA 6 cut(s) 842, 957, 1404, 1449, 1508, 1607
Tru9I TTAA 6 cut(s) 842, 957, 1404, 1449, 1508, 1607
TscAI CASTG 5 cut(s) 24, 134, 729, 1390, 1652
TseFI GTSAC 1 cut(s) 1126
TseI GCWGC 3 cut(s) 1241, 1430, 1532
Tsp45I GTSAC 1 cut(s) 1126
TspRI CASTG 5 cut(s) 24, 134, 729, 1390, 1652
Van91I CCANNNNNTGG 1 cut(s) 796
VneI GTGCAC 1 cut(s) 1458
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 1449
XapI RAATTY 2 cut(s) 1966, 2072
XceI RCATGY 1 cut(s) 1656
XmiI GTMKAC 1 cut(s) 1687
XspI CTAG 5 cut(s) 123, 444, 1577, 1905, 2106
Zsp2I ATGCAT 3 cut(s) 273, 859, 1658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.