Rh1CG411600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015712
Physical Location & Seq
Reverse (-)
67468706 .. 67470901
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG411600.1

Sequence Viewer

Length: 2118 bp
ATGCTGGTACTCAAAACACTGAAGCAAACCCAATGGAAACAAAACCTCAAACACTTCTCGACCCTTTACAAACCACCAAAAACTGACCTCCCAGCAATAGTTTCCACCAACATTTCCATAACCAAGCACTGCAAAACCGGCCAACTCGACATTGCTCGCAAACTATTCGACGAAATGCCCCACCGAACCGTCGTCTCATGGAACGCCATGATTTCCGGGTACTCGAAGTGGGGCAGATTCGGGGACGCTCTGTTTTTGGTTTCGGCTATGCATCGCGGTGGTGGTAATGTAGGACCAAATGATTCCACCGTAACATCAGTGCTTGGAGCGTGCGCGCGTTCCGGGTGTTTGAGGGAGGGAATGGAGGTGCATTGTTTGGTGGTGAAGTCCGGGTTGGAGAGGTTCGAGATTCTGGGGAGTTCGTTGTTGTGTTTTTACGCTAGCTGCTTGAAAATAGGGGATGCTGAGCGGGTTTTTGAGGAGTTGCGTGGGGGGAATGAGTTGTTGTGGGGGGTGATGCTGGTTGGTTATGTGCAATGTAACTTGATGGAGAGTGCTGTGGAGTTGTTTGAGAGGATGCCGAAGAAGGATGTTGCGGCGTGGAGTAGTTTGATTTCGGGGTTTGTGAAGAGGGAAGATGGGTGTGAGAGGGCGTTGGAGTTGTTTGGGTTGATGAGGGAGAGTGGTGAGGTGGGGCCGAATGAGTTTACTTTCGACTCTGTTGTAAGGGCTTGTGGGAAACTGGGAGTGTTGTGGGTAGGGATGGTTATTCATGGCCTTTCAGTGAAATGTGGTGTTGATTTTGATGTATTTGTTAGTGTTGCGTTGATAGAGTTCTATAGTGATTGCCAAGCTGTGGACTTTGCCAAGAGAGTTTATGAAGGAATGGAGAACCCGAGTTTAAATGCTTCCAATGCATATATAGGGAGGCTTGTATTGATGGGTAGGATTGAAGATGCAGAGAGAGTTTTTGATGGAGTGAAAGAGAAGGATTCAGTTTCATACAATTTGATGATTAAAGGTTATGCGATGATGGATCAAGTCAATGAGGCAAAGAGGTTATTTGAGTGTATGAAGCACAGAACTATAGTTTCTTCCAATACAATGATTTCTGTGTACTCCAGGAATGGTGAGATTGATAAGGCTTTACAGCTTTTTGAAGAAACGAAAGGGGAAAGAGACCATGTGACGTGGAGTGCCATGATGTCGGCTTATATTCATAATCAGCAACATGAGGAGGCTCTGGAACTATATGTTACAATGTGCAGATTATCAATAGACCGTACAAGATCAACATTCGCTGCTCTATTTCATGCCTGTTCATGCCTTGGTTCTCTTGAGTTGGGACAAGTGCTCCATGCCCAGTTGATCAAGACACCATTTGAATCGAATGTATATGTTGGAACTTCTCTAATTGATATGTATTCGAAATGCGGGTGCATCACTGATGCAGAAACATCCTTTAACAGCATTACTTCACCCAATGTGGCAGCTTGGACAGCTCTCATTAATGGGTGTGCACAACATGGGCTTGGCTCTGAGGCAGTTTTGTTGTTTGAGAGAATGTTAAAGCAAGGATTCATCCCTAATGCTGCTACTGTTTTTGGGGTTCTGTCTGCCTGCAATCATTCTGGCCTAGTAAATGAAGGGAGGAGAATATATGACTTAATGGAAAAAAGTTATGGGATAAACCCAAGTTTGGAACACTGTGCATGCATAGTAGATCTTCTTGGTCGGTCTGGCCGTCTACAAGAAGCTATGGATTTTATTGAAGAAATGACCATTGAACCAGATGGGGTTATCTGGGGAGCAATGCTCAATGCGTGTTGGTTGTGGATGGACACAGAACTTGCTGAGCAGGGGAAGTTTGAGGAGAAGATCAATGCTAGAAACAGATTGAGAAAATTGAAAGCAAAAAAGGATCCTGGATGCAGTTGGATTCGGCTGAATTTCCAAGTTCATCAATTTGCTGTACAAGATACTAACCATCCTCATTGTACCATGATTTACAAAACTTTGGAGCATCTGACAGCAAATATGAACTCTATCGTTGAATTTGGTTCTGTTTATATGCCAACAGTAAACTCTAGTTCTATCTATGCAACATATATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

705

Amino Acids

78.72

Weight (kDa)

6.06

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 113 1.3e-06 PPR repeat family
PPR_2 PF13041 330 - 363 6.6e-06 PPR repeat family
PPR PF01535 333 - 361 5.7e-06 PPR repeat
PPR PF01535 364 - 390 5.5e-06 PPR repeat
PPR_2 PF13041 394 - 441 2.3e-07 PPR repeat family
PPR_2 PF13041 494 - 541 1.5e-08 PPR repeat family
PPR PF01535 498 - 527 3.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 856
AccBSI CCGCTC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 1747
AccII CGCG 3 cut(s) 276, 335, 337
AciI CCGC 4 cut(s) 276, 469, 596, 1434
AclWI GGATC 3 cut(s) 1044, 1916, 1929
AcoI YGGCCR 2 cut(s) 139, 1741
AcsI RAATTY 2 cut(s) 1948, 2054
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 6 cut(s) 9, 221, 1118, 1285, 1974, 1999
AfiI CCNNNNNNNGG 2 cut(s) 856, 1699
AgsI TTSAA 8 cut(s) 451, 953, 1160, 1385, 1772, 1787, 1909, 2054
AjiI CACGTC 1 cut(s) 1191
AjnI CCWGG 2 cut(s) 1121, 1924
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 6 cut(s) 444, 854, 1153, 1493, 1502, 1757
AluI AGCT 6 cut(s) 444, 854, 1153, 1493, 1502, 1757
Alw21I GWGCWC 2 cut(s) 1356, 1522
Alw26I GTCTC 2 cut(s) 199, 1173
Alw44I GTGCAC 1 cut(s) 1518
AlwI GGATC 3 cut(s) 1044, 1916, 1929
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 5 cut(s) 139, 695, 775, 1633, 1741
ApaLI GTGCAC 1 cut(s) 1518
ApeKI GCWGC 4 cut(s) 444, 1301, 1490, 1592
ApoI RAATTY 2 cut(s) 1948, 2054
AseI ATTAAT 1 cut(s) 1509
AspLEI GCGC 2 cut(s) 335, 337
AspS9I GGNCC 2 cut(s) 293, 695
AsuC2I CCSGG 3 cut(s) 217, 343, 391
AsuHPI GGTGA 5 cut(s) 394, 526, 698, 1142, 1470
AsuII TTCGAA 1 cut(s) 1427
AsuNHI GCTAGC 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 1522
BamHI GGATCC 1 cut(s) 1921
Bbv12I GWGCWC 2 cut(s) 1356, 1522
BbvI GCAGC 4 cut(s) 431, 1288, 1502, 1579
BccI CCATC 9 cut(s) 541, 632, 757, 934, 968, 1027, 1787, 1831, 1995
BceAI ACGGC 1 cut(s) 1728
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 1123, 1926
BclI TGATCA 1 cut(s) 1368
BcnI CCSGG 3 cut(s) 217, 343, 391
BcoDI GTCTC 2 cut(s) 199, 1173
BfaI CTAG 4 cut(s) 441, 1637, 1887, 2088
BfmI CTRYAG 2 cut(s) 838, 1086
BglII AGATCT 1 cut(s) 1723
BisI GCNGC 5 cut(s) 445, 597, 1302, 1491, 1593
BlpI GCTNAGC 2 cut(s) 465, 1854
BlsI GCNGC 5 cut(s) 446, 598, 1303, 1492, 1594
Bme1390I CCNGG 5 cut(s) 217, 343, 391, 1123, 1926
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 1191
BmgT120I GGNCC 2 cut(s) 293, 695
BmiI GGNNCC 2 cut(s) 696, 1923
BmrFI CCNGG 5 cut(s) 217, 343, 391, 1123, 1926
BmrI ACTGGG 2 cut(s) 752, 1357
BmsI GCATC 9 cut(s) 280, 451, 507, 567, 946, 1438, 1449, 1919, 2032
BmtI GCTAGC 1 cut(s) 444
BmuI ACTGGG 2 cut(s) 752, 1357
BplI GAGNNNNNCTC 2 cut(s) 1800, 1832
BpmI CTGGAG 1 cut(s) 1105
Bpu1102I GCTNAGC 2 cut(s) 465, 1854
Bpu14I TTCGAA 1 cut(s) 1427
BpuEI CTTGAG 1 cut(s) 1358
BpuMI CCSGG 3 cut(s) 217, 343, 391
BsaI GGTCTC 1 cut(s) 1173
BsaJI CCNNGG 1 cut(s) 1327
BsaXI ACNNNNNCTCC 2 cut(s) 1338, 1368
Bsc4I CCNNNNNNNGG 2 cut(s) 856, 1699
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 747, 1363
Bse3DI GCAATG 3 cut(s) 150, 542, 1818
BseBI CCWGG 2 cut(s) 1123, 1926
BseDI CCNNGG 1 cut(s) 1327
BseGI GGATG 9 cut(s) 466, 582, 595, 768, 1457, 1581, 1842, 1934, 1987
BseLI CCNNNNNNNGG 2 cut(s) 856, 1699
BseMI GCAATG 3 cut(s) 150, 542, 1818
BseMII CTCAG 3 cut(s) 456, 1530, 1845
BseNI ACTGG 2 cut(s) 747, 1363
BsePI GCGCGC 1 cut(s) 333
BseRI GAGGAG 4 cut(s) 494, 1250, 1666, 1886
BseSI GKGCMC 1 cut(s) 1522
BseXI GCAGC 4 cut(s) 431, 1288, 1502, 1579
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 1285
Bsh1236I CGCG 3 cut(s) 276, 335, 337
BshFI GGCC 5 cut(s) 141, 697, 777, 1635, 1743
BsiHKAI GWGCWC 2 cut(s) 1356, 1522
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 4 cut(s) 138, 216, 342, 390
BslFI GGGAC 2 cut(s) 257, 1359
BslI CCNNNNNNNGG 2 cut(s) 856, 1699
BsmAI GTCTC 2 cut(s) 199, 1173
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 257, 1359
BsnI GGCC 5 cut(s) 141, 697, 777, 1635, 1743
Bso31I GGTCTC 1 cut(s) 1173
BsoBI CYCGRG 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 1427
Bsp1286I GDGCHC 2 cut(s) 1356, 1522
Bsp1407I TGTACA 1 cut(s) 1972
Bsp143I GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
Bsp1720I GCTNAGC 2 cut(s) 465, 1854
BspACI CCGC 4 cut(s) 276, 469, 596, 1434
BspANI GGCC 5 cut(s) 141, 697, 777, 1635, 1743
BspCNI CTCAG 3 cut(s) 457, 1531, 1846
BspFNI CGCG 3 cut(s) 276, 335, 337
BspLI GGNNCC 2 cut(s) 696, 1923
BspOI GCTAGC 1 cut(s) 444
BspPI GGATC 3 cut(s) 1044, 1916, 1929
BspT104I TTCGAA 1 cut(s) 1427
BspTNI GGTCTC 1 cut(s) 1173
BsrBI CCGCTC 1 cut(s) 469
BsrDI GCAATG 3 cut(s) 150, 542, 1818
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 1972
BsrI ACTGG 2 cut(s) 747, 1363
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 1327
BssHII GCGCGC 1 cut(s) 333
BssMI GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
BssT1I CCWWGG 1 cut(s) 1327
Bst2UI CCWGG 2 cut(s) 1123, 1926
Bst4CI ACNGT 6 cut(s) 190, 310, 1283, 1600, 1709, 2080
Bst6I CTCTTC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 1972
BstBI TTCGAA 1 cut(s) 1427
BstC8I GCNNGC 6 cut(s) 157, 331, 335, 442, 1621, 1714
BstDEI CTNAG 3 cut(s) 465, 1539, 1854
BstF5I GGATG 9 cut(s) 466, 582, 595, 768, 1457, 1581, 1842, 1934, 1987
BstFNI CGCG 3 cut(s) 276, 335, 337
BstHHI GCGC 2 cut(s) 335, 337
BstKTI GATC 6 cut(s) 1039, 1292, 1371, 1726, 1881, 1924
BstMAI GTCTC 2 cut(s) 199, 1173
BstMBI GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
BstMWI GCNNNNNNNGC 3 cut(s) 138, 914, 1499
BstNI CCWGG 2 cut(s) 1123, 1926
BstNSI RCATGY 1 cut(s) 1716
BstSCI CCNGG 5 cut(s) 215, 341, 389, 1121, 1924
BstSFI CTRYAG 2 cut(s) 838, 1086
BstSLI GKGCMC 1 cut(s) 1522
BstUI CGCG 3 cut(s) 276, 335, 337
BstV1I GCAGC 4 cut(s) 431, 1288, 1502, 1579
BstX2I RGATCY 2 cut(s) 1723, 1921
BstYI RGATCY 2 cut(s) 1723, 1921
BsuRI GGCC 5 cut(s) 141, 697, 777, 1635, 1743
BtgZI GCGATG 2 cut(s) 257, 1043
BtrI CACGTC 1 cut(s) 1191
BtsCI GGATG 9 cut(s) 466, 582, 595, 768, 1457, 1581, 1842, 1934, 1987
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 6 cut(s) 17, 127, 324, 789, 1443, 1705
Cac8I GCNNGC 6 cut(s) 157, 331, 335, 442, 1621, 1714
CfoI GCGC 2 cut(s) 335, 337
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 293, 695
CseI GACGC 1 cut(s) 254
Csp6I GTAC 6 cut(s) 8, 220, 1117, 1284, 1973, 1998
CviQI GTAC 6 cut(s) 8, 220, 1117, 1284, 1973, 1998
DdeI CTNAG 3 cut(s) 465, 1539, 1854
DpnI GATC 6 cut(s) 1038, 1291, 1370, 1725, 1880, 1923
DpnII GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
DraI TTTAAA 1 cut(s) 903
EaeI YGGCCR 2 cut(s) 139, 1741
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 1327
Eco31I GGTCTC 1 cut(s) 1173
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 1121, 1924
EcoT14I CCWWGG 1 cut(s) 1327
EcoT22I ATGCAT 3 cut(s) 273, 919, 1718
ErhI CCWWGG 1 cut(s) 1327
Esp3I CGTCTC 1 cut(s) 199
FaqI GGGAC 2 cut(s) 257, 1359
FauI CCCGC 2 cut(s) 462, 1427
FbaI TGATCA 1 cut(s) 1368
FblI GTMKAC 1 cut(s) 1747
Fnu4HI GCNGC 5 cut(s) 445, 597, 1302, 1491, 1593
FokI GGATG 9 cut(s) 473, 589, 602, 775, 1444, 1568, 1849, 1941, 1974
Fsp4HI GCNGC 5 cut(s) 445, 597, 1302, 1491, 1593
FspBI CTAG 4 cut(s) 441, 1637, 1887, 2088
GlaI GCGC 2 cut(s) 334, 336
GluI GCNGC 5 cut(s) 445, 597, 1302, 1491, 1593
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 1105
HaeIII GGCC 5 cut(s) 141, 697, 777, 1635, 1743
HapII CCGG 4 cut(s) 138, 216, 342, 390
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 335, 337
Hin6I GCGC 2 cut(s) 333, 335
HinP1I GCGC 2 cut(s) 333, 335
HinfI GANTC 8 cut(s) 237, 302, 409, 716, 992, 1385, 1578, 1939
HpaII CCGG 4 cut(s) 138, 216, 342, 390
HphI GGTGA 5 cut(s) 394, 526, 698, 1142, 1470
Hpy166II GTNNAC 6 cut(s) 708, 859, 1117, 1520, 1748, 2083
Hpy188I TCNGA 2 cut(s) 1540, 2028
Hpy188III TCNNGA 5 cut(s) 58, 406, 1244, 1337, 1372
Hpy8I GTNNAC 6 cut(s) 708, 859, 1117, 1520, 1748, 2083
Hpy99I CGWCG 2 cut(s) 173, 194
HpyAV CCTTC 4 cut(s) 580, 875, 982, 1640
HpyCH4III ACNGT 6 cut(s) 190, 310, 1283, 1600, 1709, 2080
HpyCH4IV ACGT 1 cut(s) 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 914, 1499
HpyF3I CTNAG 3 cut(s) 465, 1539, 1854
HpySE526I ACGT 1 cut(s) 1190
HspAI GCGC 2 cut(s) 333, 335
Ksp22I TGATCA 1 cut(s) 1368
Kzo9I GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
LmnI GCTCC 4 cut(s) 326, 1359, 1808, 2020
Lsp1109I GCAGC 4 cut(s) 431, 1288, 1502, 1579
LweI GCATC 9 cut(s) 280, 451, 507, 567, 946, 1438, 1449, 1919, 2032
MaeI CTAG 4 cut(s) 441, 1637, 1887, 2088
MaeII ACGT 1 cut(s) 1190
MaeIII GTNAC 4 cut(s) 310, 539, 1186, 1255
MalI GATC 6 cut(s) 1038, 1291, 1370, 1725, 1880, 1923
MbiI CCGCTC 1 cut(s) 469
MboI GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
MboII GAAGA 9 cut(s) 595, 640, 647, 965, 1086, 1172, 1718, 1784, 1888
MflI RGATCY 2 cut(s) 1723, 1921
MhlI GDGCHC 2 cut(s) 1356, 1522
MluCI AATT 6 cut(s) 1006, 1413, 1904, 1948, 1964, 2054
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 4 cut(s) 375, 636, 1381, 1916
Mph1103I ATGCAT 3 cut(s) 273, 919, 1718
MseI TTAA 6 cut(s) 902, 1017, 1464, 1509, 1568, 1667
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 4 cut(s) 138, 216, 342, 390
MspR9I CCNGG 5 cut(s) 217, 343, 391, 1123, 1926
MvaI CCWGG 2 cut(s) 1123, 1926
MvnI CGCG 3 cut(s) 276, 335, 337
MwoI GCNNNNNNNGC 3 cut(s) 138, 914, 1499
NciI CCSGG 3 cut(s) 217, 343, 391
NdeII GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
NheI GCTAGC 1 cut(s) 440
NlaIV GGNNCC 2 cut(s) 696, 1923
NmuCI GTSAC 1 cut(s) 1186
NsiI ATGCAT 3 cut(s) 273, 919, 1718
NspI RCATGY 1 cut(s) 1716
NspV TTCGAA 1 cut(s) 1427
PaeI GCATGC 1 cut(s) 1716
PauI GCGCGC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 1741
PfeI GAWTC 7 cut(s) 237, 302, 409, 992, 1385, 1578, 1939
PflMI CCANNNNNTGG 1 cut(s) 856
PfoI TCCNGGA 2 cut(s) 1121, 1924
PkrI GCNGC 5 cut(s) 446, 598, 1303, 1492, 1594
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PshBI ATTAAT 1 cut(s) 1509
Psp6I CCWGG 2 cut(s) 1121, 1924
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 1121, 1924
PspN4I GGNNCC 2 cut(s) 696, 1923
PspPI GGNCC 2 cut(s) 293, 695
PsuI RGATCY 2 cut(s) 1723, 1921
PteI GCGCGC 1 cut(s) 333
RsaI GTAC 6 cut(s) 9, 221, 1118, 1285, 1974, 1999
RsaNI GTAC 6 cut(s) 8, 220, 1117, 1284, 1973, 1998
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 6 cut(s) 902, 1017, 1464, 1509, 1568, 1667
SatI GCNGC 5 cut(s) 445, 597, 1302, 1491, 1593
Sau3AI GATC 6 cut(s) 1036, 1289, 1368, 1723, 1878, 1921
Sau96I GGNCC 2 cut(s) 293, 695
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 5 cut(s) 217, 343, 391, 1123, 1926
SduI GDGCHC 2 cut(s) 1356, 1522
SfaNI GCATC 9 cut(s) 280, 451, 507, 567, 946, 1438, 1449, 1919, 2032
SfcI CTRYAG 2 cut(s) 838, 1086
SfuI TTCGAA 1 cut(s) 1427
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 1337
SmoI CTYRAG 1 cut(s) 1337
SphI GCATGC 1 cut(s) 1716
Sse9I AATT 6 cut(s) 1006, 1413, 1904, 1948, 1964, 2054
SsiI CCGC 4 cut(s) 276, 469, 596, 1434
SspMI CTAG 4 cut(s) 441, 1637, 1887, 2088
StyD4I CCNGG 5 cut(s) 215, 341, 389, 1121, 1924
StyI CCWWGG 1 cut(s) 1327
TaaI ACNGT 6 cut(s) 190, 310, 1283, 1600, 1709, 2080
TaiI ACGT 1 cut(s) 1193
TaqI TCGA 8 cut(s) 59, 147, 168, 224, 405, 714, 1388, 1427
TaqII GACCGA 1 cut(s) 1725
TasI AATT 6 cut(s) 1006, 1413, 1904, 1948, 1964, 2054
TatI WGTACW 2 cut(s) 1116, 1972
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 7 cut(s) 237, 302, 409, 992, 1385, 1578, 1939
Tru1I TTAA 6 cut(s) 902, 1017, 1464, 1509, 1568, 1667
Tru9I TTAA 6 cut(s) 902, 1017, 1464, 1509, 1568, 1667
TscAI CASTG 6 cut(s) 24, 134, 324, 789, 1450, 1712
TseFI GTSAC 1 cut(s) 1186
TseI GCWGC 4 cut(s) 444, 1301, 1490, 1592
Tsp45I GTSAC 1 cut(s) 1186
TspRI CASTG 6 cut(s) 24, 134, 324, 789, 1450, 1712
Van91I CCANNNNNTGG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 1518
VpaK11BI GGWCC 1 cut(s) 293
VspI ATTAAT 1 cut(s) 1509
XapI RAATTY 2 cut(s) 1948, 2054
XceI RCATGY 1 cut(s) 1716
XmiI GTMKAC 1 cut(s) 1747
XspI CTAG 4 cut(s) 441, 1637, 1887, 2088
Zsp2I ATGCAT 3 cut(s) 273, 919, 1718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.