Rmu_sc0041619.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041619.1
OG0015712
Physical Location & Seq
Forward (+)
56 .. 690
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041619.1_g000001.1.cds

Sequence Viewer

Length: 635 bp
atgggccaactcgacattgctcgcaatctattcgacgaaatgccccaccgaaccgtcgtctcatggaacgccatgatttccgggtactcgaagtggggcagattcggggacgctctgtttttggtttcggctatgcatcgtggtggcggtaatgtaggaccaaatgattccaccgtaacatcagcgcttggagcgtgcgcgcgttccgggtgtttgagggagggaatgcaggtgcattgtttggtggtgaagtccgggttggagaggttcgagattctggggagttcgttgttgtgtttttacgctagctgtttgaaaattggggaagctgagcgggtttttgaggagttgcgtggggggaatgagttgttgtggggggtgatgctggttggttatgtgcaatgtaacttgatggagagtgctgtggagttgtttgagaggatgccgaagaaggatgttgcggcgtggagtagtttgatttcggggtatgtgaagagggaagatgggtgtgagagggcgttggagttgtttgggttgatgagggagagtggtggggtggtgccgaatgagtttactttcgactctgttgtaagggcttgtgggaaactgggagtgctgtgggtagggatggttat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

211

Amino Acids

23.1

Weight (kDa)

5.7

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 559
AccBSI CCGCTC 1 cut(s) 334
AccII CGCG 2 cut(s) 200, 202
AciI CCGC 3 cut(s) 147, 334, 461
AfaI GTAC 1 cut(s) 86
AfeI AGCGCT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 2 cut(s) 309, 329
AluI AGCT 2 cut(s) 309, 329
Alw26I GTCTC 1 cut(s) 64
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 1 cut(s) 4
AspLEI GCGC 3 cut(s) 187, 200, 202
AspS9I GGNCC 2 cut(s) 4, 158
AsuC2I CCSGG 3 cut(s) 82, 208, 256
AsuHPI GGTGA 2 cut(s) 259, 391
AsuNHI GCTAGC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 559
BccI CCATC 3 cut(s) 406, 497, 622
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 3 cut(s) 82, 208, 256
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 220
BisI GCNGC 1 cut(s) 462
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 3 cut(s) 82, 208, 256
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 4, 158
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 3 cut(s) 82, 208, 256
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 3 cut(s) 145, 372, 432
BmtI GCTAGC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 617
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 82, 208, 256
Bse1I ACTGG 1 cut(s) 612
Bse3DI GCAATG 2 cut(s) 15, 407
BseGI GGATG 3 cut(s) 447, 460, 633
BseMI GCAATG 2 cut(s) 15, 407
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 612
BsePI GCGCGC 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 200, 202
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 559
BsiSI CCGG 3 cut(s) 81, 207, 255
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 231
BsnI GGCC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 147, 334, 461
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 2 cut(s) 200, 202
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 559
BsrBI CCGCTC 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 15, 407
BsrI ACTGG 1 cut(s) 612
BssHII GCGCGC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 55, 175
Bst6I CTCTTC 1 cut(s) 488
BstC8I GCNNGC 4 cut(s) 22, 196, 200, 307
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 3 cut(s) 447, 460, 633
BstFNI CGCG 2 cut(s) 200, 202
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 3 cut(s) 187, 200, 202
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 80, 206, 254
BstUI CGCG 2 cut(s) 200, 202
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 3 cut(s) 447, 460, 633
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 4 cut(s) 22, 196, 200, 307
CfoI GCGC 3 cut(s) 187, 200, 202
Cfr13I GGNCC 2 cut(s) 4, 158
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 63, 73
CviJI RGCY 5 cut(s) 6, 131, 309, 329, 596
CviKI_1 RGCY 5 cut(s) 6, 131, 309, 329, 596
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 66, 76
FaiI YATR 5 cut(s) 64, 74, 134, 396, 489
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 62, 72
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 454, 467
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 306
GlaI GCGC 3 cut(s) 186, 199, 201
GluI GCNGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 1 cut(s) 6
HapII CCGG 3 cut(s) 81, 207, 255
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 187, 200, 202
Hin1II CATG 2 cut(s) 66, 76
Hin6I GCGC 3 cut(s) 185, 198, 200
HinP1I GCGC 3 cut(s) 185, 198, 200
HinfI GANTC 4 cut(s) 102, 167, 274, 581
HpaII CCGG 3 cut(s) 81, 207, 255
HphI GGTGA 2 cut(s) 259, 391
Hpy166II GTNNAC 1 cut(s) 573
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 573
Hpy99I CGWCG 2 cut(s) 38, 59
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 55, 175
HpyCH4V TGCA 4 cut(s) 136, 229, 235, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 2 cut(s) 66, 76
HspAI GCGC 3 cut(s) 185, 198, 200
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 94, 215, 220, 263, 268, 371, 593
LweI GCATC 3 cut(s) 145, 372, 432
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 175, 404
MbiI CCGCTC 1 cut(s) 334
MboII GAAGA 3 cut(s) 460, 505, 512
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 240, 501
MnlI CCTC 8 cut(s) 210, 214, 258, 337, 432, 489, 507, 534
Mph1103I ATGCAT 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 3 cut(s) 81, 207, 255
MspR9I CCNGG 3 cut(s) 82, 208, 256
Mva1269I GAATGC 1 cut(s) 231
MvnI CGCG 2 cut(s) 200, 202
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 3 cut(s) 82, 208, 256
NheI GCTAGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 66, 76
NlaIV GGNNCC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 220
PauI GCGCGC 1 cut(s) 198
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 102, 167, 274
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 2 cut(s) 4, 158
PteI GCGCGC 1 cut(s) 198
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 1 cut(s) 462
Sau96I GGNCC 2 cut(s) 4, 158
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 82, 208, 256
SetI ASST 4 cut(s) 234, 269, 311, 331
SfaNI GCATC 3 cut(s) 145, 372, 432
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 318
SsiI CCGC 3 cut(s) 147, 334, 461
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 80, 206, 254
TaaI ACNGT 2 cut(s) 55, 175
TaqI TCGA 5 cut(s) 12, 33, 89, 270, 579
TasI AATT 1 cut(s) 318
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 102, 167, 274
VpaK11BI GGWCC 1 cut(s) 158
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.