Rmu_sc0041528.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041528.1
OG0015712
Physical Location & Seq
Forward (+)
56 .. 687
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041528.1_g000001.1.cds

Sequence Viewer

Length: 632 bp
atgggccaactcgacattgctcgcaagctattcgacgaaatgccccaccgaaccgtcgtctcatggaacgccatgatttccgggtactcgaagcggggcagattcggggacgctctgtttttggtttcggctatgcatcgcggtggtaatgtaggaccaaatgattccaccgtaacatcggcgcttggagcgtgcgcgcgttccgggtgtttgagggagggaatgcaggtgcattgtttggtggtgaagtccgggttggagaggttcgagattctggggagttcgttgctgtgtttttacgctagctgtttgaaaattggggatgctgagcgggtttttgaggagttgcgtggggggaatgagttgttgtggggggtgatgctggttggttatgtgcaatgtaacttgatggagagtgctgcggagttgtttgagaggatgccgaagaaggatgttgcggcgtggagtagtttgatttcagggtatgtgaagagggaagatgggtgtgagagggcgttggagttgtttgggttgatgagggagagtggtgaggtggtgccgaatgagtttactttcgactctgttgtaagggcttgtgggaaactgggagtgctgtgggtagggatggttat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

210

Amino Acids

23.06

Weight (kDa)

5.98

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 331
AccII CGCG 3 cut(s) 141, 197, 199
AciI CCGC 5 cut(s) 94, 141, 331, 422, 458
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 28, 306
AluI AGCT 2 cut(s) 28, 306
Alw26I GTCTC 1 cut(s) 64
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 419
AspLEI GCGC 3 cut(s) 184, 197, 199
AspS9I GGNCC 2 cut(s) 4, 155
AsuC2I CCSGG 3 cut(s) 82, 205, 253
AsuHPI GGTGA 3 cut(s) 256, 388, 560
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 556
BbvI GCAGC 1 cut(s) 406
BccI CCATC 3 cut(s) 403, 494, 619
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 3 cut(s) 82, 205, 253
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 2 cut(s) 420, 459
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 2 cut(s) 421, 460
Bme1390I CCNGG 3 cut(s) 82, 205, 253
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 4, 155
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 3 cut(s) 82, 205, 253
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 4 cut(s) 145, 313, 369, 429
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 614
Bpu1102I GCTNAGC 1 cut(s) 327
BpuMI CCSGG 3 cut(s) 82, 205, 253
Bse1I ACTGG 1 cut(s) 609
Bse3DI GCAATG 2 cut(s) 15, 404
BseGI GGATG 4 cut(s) 328, 444, 457, 630
BseMI GCAATG 2 cut(s) 15, 404
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 609
BsePI GCGCGC 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 3 cut(s) 141, 197, 199
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 556
BsiSI CCGG 3 cut(s) 81, 204, 252
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 1 cut(s) 6
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 5 cut(s) 94, 141, 331, 422, 458
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 3 cut(s) 141, 197, 199
BspLI GGNNCC 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 217
BspOI GCTAGC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 556
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 15, 404
BsrI ACTGG 1 cut(s) 609
BssHII GCGCGC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 55, 172
Bst6I CTCTTC 1 cut(s) 485
BstC8I GCNNGC 5 cut(s) 22, 26, 193, 197, 304
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 4 cut(s) 328, 444, 457, 630
BstFNI CGCG 3 cut(s) 141, 197, 199
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 3 cut(s) 184, 197, 199
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 80, 203, 251
BstUI CGCG 3 cut(s) 141, 197, 199
BstV1I GCAGC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 4 cut(s) 328, 444, 457, 630
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 5 cut(s) 22, 26, 193, 197, 304
CfoI GCGC 3 cut(s) 184, 197, 199
Cfr13I GGNCC 2 cut(s) 4, 155
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 63, 73
CviJI RGCY 5 cut(s) 6, 28, 131, 306, 593
CviKI_1 RGCY 5 cut(s) 6, 28, 131, 306, 593
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 66, 76
FaiI YATR 5 cut(s) 64, 74, 134, 393, 486
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 62, 72
FauI CCCGC 2 cut(s) 87, 324
Fnu4HI GCNGC 2 cut(s) 420, 459
FokI GGATG 3 cut(s) 335, 451, 464
Fsp4HI GCNGC 2 cut(s) 420, 459
FspBI CTAG 1 cut(s) 303
GlaI GCGC 3 cut(s) 183, 196, 198
GluI GCNGC 2 cut(s) 420, 459
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 6
HapII CCGG 3 cut(s) 81, 204, 252
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 184, 197, 199
Hin1II CATG 2 cut(s) 66, 76
Hin6I GCGC 3 cut(s) 182, 195, 197
HinP1I GCGC 3 cut(s) 182, 195, 197
HinfI GANTC 4 cut(s) 102, 164, 271, 578
HpaII CCGG 3 cut(s) 81, 204, 252
HphI GGTGA 3 cut(s) 256, 388, 560
Hpy166II GTNNAC 1 cut(s) 570
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 570
Hpy99I CGWCG 2 cut(s) 38, 59
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 2 cut(s) 55, 172
HpyCH4V TGCA 4 cut(s) 136, 226, 232, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 66, 76
HspAI GCGC 3 cut(s) 182, 195, 197
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 8 cut(s) 94, 212, 217, 260, 265, 368, 465, 590
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 4 cut(s) 145, 313, 369, 429
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 172, 401
MbiI CCGCTC 1 cut(s) 331
MboII GAAGA 3 cut(s) 457, 502, 509
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 237, 498
MnlI CCTC 9 cut(s) 207, 211, 255, 334, 429, 486, 504, 531, 544
Mph1103I ATGCAT 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 3 cut(s) 81, 204, 252
MspR9I CCNGG 3 cut(s) 82, 205, 253
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 3 cut(s) 141, 197, 199
MwoI GCNNNNNNNGC 1 cut(s) 188
NciI CCSGG 3 cut(s) 82, 205, 253
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 66, 76
NlaIV GGNNCC 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 217
PauI GCGCGC 1 cut(s) 195
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 3 cut(s) 102, 164, 271
PkrI GCNGC 2 cut(s) 421, 460
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 2 cut(s) 4, 155
PteI GCGCGC 1 cut(s) 195
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 2 cut(s) 420, 459
Sau96I GGNCC 2 cut(s) 4, 155
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 3 cut(s) 82, 205, 253
SetI ASST 5 cut(s) 30, 231, 266, 308, 555
SfaNI GCATC 4 cut(s) 145, 313, 369, 429
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 315
SsiI CCGC 5 cut(s) 94, 141, 331, 422, 458
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 80, 203, 251
TaaI ACNGT 2 cut(s) 55, 172
TaqI TCGA 5 cut(s) 12, 33, 89, 267, 576
TasI AATT 1 cut(s) 315
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 3 cut(s) 102, 164, 271
TseI GCWGC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.