Rw1G038490

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015712
Physical Location & Seq
Reverse (-)
66008167 .. 66010458
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038490.1

Sequence Viewer

Length: 2193 bp
ATGCTGGTACTCAAAACACTGCAGCAAACCCAATGGAAACAAAACCTCAAACGCTTCTCGACCCTTTACAAACCACCAAAAACTGACCTCCCAGCAATAGTTTCCACCAACATTTCCATAACCAACCACTGCAAAATGGGCCAACTCGACATTGCTCGCAAGCTATTCGACGAAATGCCCCACCGAACCGTCGTCTCATGGAACGCCATGATTTCCGGGTACTCGAAGCGGGGCAGATTCGGGGACGCTCTGTTTTTGGTTTCGGCTATGCATCGCGGTGGTAATGTAGGACCAAATGATTCCACCGTAACATCGGCGCTTGGAGCGTGCGCGCGTTCCGGGTGTTTGAGGGAGGGAATGGAGGTGCATTGTTTGGTGGTGAAGTCCGGGTTGGAGAGGTTCGAGATTCTGGGGAGTTCGTTGTTGTGTTTTTACGCTAGCTGTTTGAAAATTGGGGAAGCTGAGCGGGTTTTTGAGGAGTTGCGTGGGGGGAATGAGTTGTTGTGGGGGGTGATGCTGGTTGGTTATGTGCAATGTAACTTGATGGAGAGTGCTGTGGAGTTGTTTGAGAGGATGCCGAAGAAGGATGTTGCGGCGTGGAGTAGTTTGATTTCGGGGTATGTGAAGAGGGAAGATGGGTGTGAGAGGGCGTTGGAGTTGTTTGGGTTGATGAGGGAGAGTGGTGAGGTGGTGCCGAATGAGTTTACTTTCGACTCTGTTGTAAGGGCTTGTGGGAAACTGGGAGTGCTGTGGGTAGGGATGGTTATTCATGGCCTTTCAGTGAAATGTGGTGTTGATTTTGATGTATTTGTTAGTGTTGCGTTGATAGAGTTCTATAGTGATTGCCAAGCTGTGGACTTTGCCAAGAGAGTTTATGAAGGAATGGAGAACCCGAGTTTAAATGCTTCCAATGCATATATAGGGAGGCTTGTATCGATGGGTAGGGTTGAAGATGCAGAGAGAGTTTTTGATGGAGTGAAAGAGAAGGATTCAGTTTCATACAATTTGACGATTAAAGGTTATGCGATGAGGGATCAAGTCAATGAGGCAAAGAGGTTATTTGAGTGTATGAAGCACAGAACTATAGTTTCTTCCAATACAATGATTTCTGTGTACTCCAGGAATGGTGAGATTGATAAGGCTTTACAGCTCTTTGAAGAAACGAAAGGGGAAAGAGACCATGTGACATGGAGTGCCATGATGTCGGGTTATATTCATAATCAGCAACATGAGGAGGCTCTGGAACTATATGTTACAATGTGCAGATTATCAATAGACCGTACAAGATCAACATTCGCTGCTCTATTTCATGCCTGTTCATGCCTTGGTTCTCTTGAGTTGGGACAAGTGCTCCATGCCCAGTTGATCAAGACACCATTTGAATCGAATGTATATGTTGGAACTTCTCTAATTGATATGTATTCGAAATGCGGGTGCATCACTGATGCAGAAACATCCTTTAACAGCATTACTTCACCCAATGTGGCAGCTTGGACAGCTCTCATTAATGGGTGTGCACAACATGGGCTTGGCTCTGAGGCAGTTTTGTTGTTTGAGAGAATGTTAAAGCAAGGATTCATCCCTAATGCTGCTACTGTTTTTGGGGTTCTGTCTGCCTGCAATCATTCTGGCCTAGTCAATGAAGGGAGGAGAATATATGACTTAATGGAAAAAAGTTATGGGATAAACCCAAGTTTGGAACACTGTGCATGCATAGTAGATCTTCTTGGTCGGTCTGGCCGTCTACAAGAAGCTATGGATTTTATTGAAGAAATGACCGTTGAACCAGATGGAGTTATCTGGGGAGCAATGCTCAATGCGTGTTGGTTGTGGATGGACACAGAACTCGCTGAGCAGGTAGCTGAGAAAATGTGTAGTTTGGATCCCAAGCCAGTATCTGCTTATGTAATTTTATCCAACATATATGCTGTACAGGGGAAGTTTGAGGAGAAGATCAACGCTAGAAACAGATTAAGAAAATTGCAAGCAAAAAAGGATCCTGGATGCAGTTGGATTCGGCTGAATTTCCAAGTTCATCAATTCTCTGTACAAGATACTAACCATCCTCATTGTACCATGATTTACAAAACTTTGGAGCATCTGACAGCAAACATGAACTCTATTGTTGAATTTGGTTCTGTTTATATGCCAACAGTAAACTCTAGTTCTATCTATGCAACATATATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase PPR PPR_2 PhoLip_ATPase_C

Protein Analysis

730

Amino Acids

81.47

Weight (kDa)

6.03

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 112 1.4e-07 PPR repeat family
PPR_2 PF13041 195 - 246 3.4e-06 PPR repeat family
PPR PF01535 363 - 389 5.8e-06 PPR repeat
PPR_2 PF13041 393 - 440 1.4e-07 PPR repeat family
PPR_2 PF13041 493 - 540 1.6e-08 PPR repeat family
PPR PF01535 497 - 526 3.4e-07 PPR repeat
E_motif PF20431 613 - 672 1.3e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1846
AccB1I GGYRCC 1 cut(s) 691
AccB7I CCANNNNNTGG 1 cut(s) 853
AccBSI CCGCTC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 1744
AccII CGCG 3 cut(s) 276, 332, 334
AciI CCGC 5 cut(s) 229, 276, 466, 593, 1431
AclWI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
AcoI YGGCCR 1 cut(s) 1738
AcsI RAATTY 2 cut(s) 2023, 2129
AfaI GTAC 7 cut(s) 9, 221, 1115, 1282, 1932, 2049, 2074
AfiI CCNNNNNNNGG 2 cut(s) 853, 1696
AgsI TTSAA 7 cut(s) 448, 950, 1157, 1382, 1769, 1784, 2129
AjnI CCWGG 2 cut(s) 1118, 1999
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 9 cut(s) 163, 441, 461, 851, 1150, 1490, 1499, 1754, 1862
AluI AGCT 9 cut(s) 163, 441, 461, 851, 1150, 1490, 1499, 1754, 1862
Alw21I GWGCWC 2 cut(s) 1353, 1519
Alw26I GTCTC 2 cut(s) 199, 1170
Alw44I GTGCAC 1 cut(s) 1515
AlwI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
AlwNI CAGNNNCTG 1 cut(s) 1898
Ama87I CYCGRG 1 cut(s) 892
AoxI GGCC 4 cut(s) 139, 772, 1630, 1738
ApaLI GTGCAC 1 cut(s) 1515
ApeKI GCWGC 4 cut(s) 22, 1298, 1487, 1589
ApoI RAATTY 2 cut(s) 2023, 2129
AseI ATTAAT 1 cut(s) 1506
AspLEI GCGC 3 cut(s) 319, 332, 334
AspS9I GGNCC 2 cut(s) 139, 290
AsuC2I CCSGG 3 cut(s) 217, 340, 388
AsuHPI GGTGA 5 cut(s) 391, 523, 695, 1139, 1467
AsuII TTCGAA 1 cut(s) 1424
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 1519
BamHI GGATCC 2 cut(s) 1882, 1996
BanI GGYRCC 1 cut(s) 691
Bbv12I GWGCWC 2 cut(s) 1353, 1519
BbvI GCAGC 4 cut(s) 34, 1285, 1499, 1576
BccI CCATC 8 cut(s) 538, 629, 754, 931, 965, 1784, 1828, 2070
BceAI ACGGC 1 cut(s) 1725
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 1120, 2001
BclI TGATCA 1 cut(s) 1365
BcnI CCSGG 3 cut(s) 217, 340, 388
BcoDI GTCTC 2 cut(s) 199, 1170
BfaI CTAG 4 cut(s) 438, 1634, 1962, 2163
BfmI CTRYAG 3 cut(s) 20, 835, 1083
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 1846
BglII AGATCT 1 cut(s) 1720
BisI GCNGC 5 cut(s) 23, 594, 1299, 1488, 1590
BlpI GCTNAGC 2 cut(s) 462, 1851
BlsI GCNGC 5 cut(s) 24, 595, 1300, 1489, 1591
Bme1390I CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 2 cut(s) 139, 290
BmiI GGNNCC 3 cut(s) 693, 1884, 1998
BmrFI CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
BmrI ACTGGG 2 cut(s) 749, 1354
BmsI GCATC 8 cut(s) 280, 504, 564, 943, 1435, 1446, 1994, 2107
BmtI GCTAGC 1 cut(s) 441
BmuI ACTGGG 2 cut(s) 749, 1354
BplI GAGNNNNNCTC 2 cut(s) 1797, 1829
BpmI CTGGAG 1 cut(s) 1102
Bpu1102I GCTNAGC 2 cut(s) 462, 1851
Bpu14I TTCGAA 1 cut(s) 1424
BpuEI CTTGAG 1 cut(s) 1355
BpuMI CCSGG 3 cut(s) 217, 340, 388
Bsa29I ATCGAT 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 1 cut(s) 1324
BsaXI ACNNNNNCTCC 2 cut(s) 1335, 1365
Bsc4I CCNNNNNNNGG 2 cut(s) 853, 1696
Bse1I ACTGG 3 cut(s) 744, 1360, 1892
Bse3DI GCAATG 3 cut(s) 150, 539, 1815
BseBI CCWGG 2 cut(s) 1120, 2001
BseCI ATCGAT 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 1324
BseGI GGATG 8 cut(s) 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BseLI CCNNNNNNNGG 2 cut(s) 853, 1696
BseMI GCAATG 3 cut(s) 150, 539, 1815
BseMII CTCAG 4 cut(s) 453, 1527, 1842, 1854
BseNI ACTGG 3 cut(s) 744, 1360, 1892
BsePI GCGCGC 1 cut(s) 330
BseRI GAGGAG 4 cut(s) 491, 1247, 1663, 1961
BseSI GKGCMC 1 cut(s) 1519
BseXI GCAGC 4 cut(s) 34, 1285, 1499, 1576
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 1282
Bsh1236I CGCG 3 cut(s) 276, 332, 334
BshFI GGCC 4 cut(s) 141, 774, 1632, 1740
BshNI GGYRCC 1 cut(s) 691
BshVI ATCGAT 1 cut(s) 935
BsiHKAI GWGCWC 2 cut(s) 1353, 1519
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 3 cut(s) 216, 339, 387
BslFI GGGAC 2 cut(s) 257, 1356
BslI CCNNNNNNNGG 2 cut(s) 853, 1696
BsmAI GTCTC 2 cut(s) 199, 1170
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 257, 1356
BsnI GGCC 4 cut(s) 141, 774, 1632, 1740
Bso31I GGTCTC 1 cut(s) 1170
BsoBI CYCGRG 1 cut(s) 892
Bsp119I TTCGAA 1 cut(s) 1424
Bsp1286I GDGCHC 2 cut(s) 1353, 1519
Bsp1407I TGTACA 2 cut(s) 1930, 2047
Bsp143I GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
Bsp1720I GCTNAGC 2 cut(s) 462, 1851
BspACI CCGC 5 cut(s) 229, 276, 466, 593, 1431
BspANI GGCC 4 cut(s) 141, 774, 1632, 1740
BspCNI CTCAG 4 cut(s) 454, 1528, 1843, 1855
BspDI ATCGAT 1 cut(s) 935
BspFNI CGCG 3 cut(s) 276, 332, 334
BspLI GGNNCC 3 cut(s) 693, 1884, 1998
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 1846
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 5 cut(s) 1041, 1877, 1890, 1991, 2004
BspT104I TTCGAA 1 cut(s) 1424
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 1170
BsrBI CCGCTC 1 cut(s) 466
BsrDI GCAATG 3 cut(s) 150, 539, 1815
BsrGI TGTACA 2 cut(s) 1930, 2047
BsrI ACTGG 3 cut(s) 744, 1360, 1892
BssECI CCNNGG 1 cut(s) 1324
BssHII GCGCGC 1 cut(s) 330
BssMI GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
BssT1I CCWWGG 1 cut(s) 1324
Bst2UI CCWGG 2 cut(s) 1120, 2001
Bst4CI ACNGT 7 cut(s) 190, 307, 1280, 1597, 1706, 1780, 2155
Bst6I CTCTTC 1 cut(s) 620
BstAUI TGTACA 2 cut(s) 1930, 2047
BstBI TTCGAA 1 cut(s) 1424
BstC8I GCNNGC 8 cut(s) 157, 161, 328, 332, 439, 1618, 1711, 1986
BstDEI CTNAG 4 cut(s) 462, 1536, 1851, 1863
BstF5I GGATG 8 cut(s) 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BstFNI CGCG 3 cut(s) 276, 332, 334
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 3 cut(s) 319, 332, 334
BstKTI GATC 7 cut(s) 1036, 1289, 1368, 1723, 1885, 1956, 1999
BstMAI GTCTC 2 cut(s) 199, 1170
BstMBI GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
BstMWI GCNNNNNNNGC 4 cut(s) 138, 323, 911, 1496
BstNI CCWGG 2 cut(s) 1120, 2001
BstNSI RCATGY 1 cut(s) 1713
BstSCI CCNGG 5 cut(s) 215, 338, 386, 1118, 1999
BstSFI CTRYAG 3 cut(s) 20, 835, 1083
BstSLI GKGCMC 1 cut(s) 1519
BstUI CGCG 3 cut(s) 276, 332, 334
BstV1I GCAGC 4 cut(s) 34, 1285, 1499, 1576
BstX2I RGATCY 3 cut(s) 1720, 1882, 1996
BstYI RGATCY 3 cut(s) 1720, 1882, 1996
Bsu15I ATCGAT 1 cut(s) 935
BsuRI GGCC 4 cut(s) 141, 774, 1632, 1740
BsuTUI ATCGAT 1 cut(s) 935
BtgZI GCGATG 2 cut(s) 257, 1040
BtsCI GGATG 8 cut(s) 579, 592, 765, 1454, 1578, 1839, 2009, 2062
BtsI GCAGTG 2 cut(s) 17, 127
BtsIMutI CAGTG 5 cut(s) 17, 127, 786, 1440, 1702
BveI ACCTGC 1 cut(s) 1846
Cac8I GCNNGC 8 cut(s) 157, 161, 328, 332, 439, 1618, 1711, 1986
CaiI CAGNNNCTG 1 cut(s) 1898
CfoI GCGC 3 cut(s) 319, 332, 334
Cfr13I GGNCC 2 cut(s) 139, 290
ClaI ATCGAT 1 cut(s) 935
CseI GACGC 1 cut(s) 254
Csp6I GTAC 7 cut(s) 8, 220, 1114, 1281, 1931, 2048, 2073
CviQI GTAC 7 cut(s) 8, 220, 1114, 1281, 1931, 2048, 2073
DdeI CTNAG 4 cut(s) 462, 1536, 1851, 1863
DpnI GATC 7 cut(s) 1035, 1288, 1367, 1722, 1884, 1955, 1998
DpnII GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
DraI TTTAAA 1 cut(s) 900
EaeI YGGCCR 1 cut(s) 1738
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 1324
Eco31I GGTCTC 1 cut(s) 1170
Eco47I GGWCC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 892
EcoRII CCWGG 2 cut(s) 1118, 1999
EcoT14I CCWWGG 1 cut(s) 1324
EcoT22I ATGCAT 3 cut(s) 273, 916, 1715
ErhI CCWWGG 1 cut(s) 1324
Esp3I CGTCTC 1 cut(s) 199
FaqI GGGAC 2 cut(s) 257, 1356
FauI CCCGC 3 cut(s) 222, 459, 1424
FbaI TGATCA 1 cut(s) 1365
FblI GTMKAC 1 cut(s) 1744
Fnu4HI GCNGC 5 cut(s) 23, 594, 1299, 1488, 1590
FokI GGATG 8 cut(s) 586, 599, 772, 1441, 1565, 1846, 2016, 2049
Fsp4HI GCNGC 5 cut(s) 23, 594, 1299, 1488, 1590
FspBI CTAG 4 cut(s) 438, 1634, 1962, 2163
GlaI GCGC 3 cut(s) 318, 331, 333
GluI GCNGC 5 cut(s) 23, 594, 1299, 1488, 1590
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 1102
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 4 cut(s) 141, 774, 1632, 1740
HapII CCGG 3 cut(s) 216, 339, 387
HgaI GACGC 1 cut(s) 254
HhaI GCGC 3 cut(s) 319, 332, 334
Hin6I GCGC 3 cut(s) 317, 330, 332
HinP1I GCGC 3 cut(s) 317, 330, 332
HinfI GANTC 8 cut(s) 237, 299, 406, 713, 989, 1382, 1575, 2014
HpaII CCGG 3 cut(s) 216, 339, 387
HphI GGTGA 5 cut(s) 391, 523, 695, 1139, 1467
Hpy166II GTNNAC 6 cut(s) 705, 856, 1114, 1517, 1745, 2158
Hpy188I TCNGA 2 cut(s) 1537, 2103
Hpy188III TCNNGA 5 cut(s) 58, 403, 1241, 1334, 1369
Hpy8I GTNNAC 6 cut(s) 705, 856, 1114, 1517, 1745, 2158
Hpy99I CGWCG 2 cut(s) 173, 194
HpyAV CCTTC 4 cut(s) 577, 872, 979, 1637
HpyCH4III ACNGT 7 cut(s) 190, 307, 1280, 1597, 1706, 1780, 2155
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 323, 911, 1496
HpyF3I CTNAG 4 cut(s) 462, 1536, 1851, 1863
HspAI GCGC 3 cut(s) 317, 330, 332
Ksp22I TGATCA 1 cut(s) 1365
Kzo9I GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
LmnI GCTCC 4 cut(s) 323, 1356, 1805, 2095
Lsp1109I GCAGC 4 cut(s) 34, 1285, 1499, 1576
LweI GCATC 8 cut(s) 280, 504, 564, 943, 1435, 1446, 1994, 2107
MaeI CTAG 4 cut(s) 438, 1634, 1962, 2163
MaeIII GTNAC 4 cut(s) 307, 536, 1183, 1252
MalI GATC 7 cut(s) 1035, 1288, 1367, 1722, 1884, 1955, 1998
MbiI CCGCTC 1 cut(s) 466
MboI GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
MboII GAAGA 9 cut(s) 592, 637, 644, 962, 1083, 1169, 1715, 1781, 1963
MflI RGATCY 3 cut(s) 1720, 1882, 1996
MhlI GDGCHC 2 cut(s) 1353, 1519
MluCI AATT 8 cut(s) 450, 1003, 1410, 1908, 1979, 2023, 2039, 2129
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 5 cut(s) 372, 633, 1378, 1941, 1991
Mph1103I ATGCAT 3 cut(s) 273, 916, 1715
MseI TTAA 7 cut(s) 899, 1014, 1461, 1506, 1565, 1664, 1973
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 3 cut(s) 216, 339, 387
MspR9I CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
MvaI CCWGG 2 cut(s) 1120, 2001
MvnI CGCG 3 cut(s) 276, 332, 334
MwoI GCNNNNNNNGC 4 cut(s) 138, 323, 911, 1496
NciI CCSGG 3 cut(s) 217, 340, 388
NdeII GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
NheI GCTAGC 1 cut(s) 437
NlaIV GGNNCC 3 cut(s) 693, 1884, 1998
NmuCI GTSAC 1 cut(s) 1183
NsiI ATGCAT 3 cut(s) 273, 916, 1715
NspI RCATGY 1 cut(s) 1713
NspV TTCGAA 1 cut(s) 1424
PaeI GCATGC 1 cut(s) 1713
PauI GCGCGC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 1738
PfeI GAWTC 7 cut(s) 237, 299, 406, 989, 1382, 1575, 2014
PflMI CCANNNNNTGG 1 cut(s) 853
PfoI TCCNGGA 2 cut(s) 1118, 1999
PkrI GCNGC 5 cut(s) 24, 595, 1300, 1489, 1591
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PshBI ATTAAT 1 cut(s) 1506
Psp6I CCWGG 2 cut(s) 1118, 1999
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 2 cut(s) 1118, 1999
PspN4I GGNNCC 3 cut(s) 693, 1884, 1998
PspPI GGNCC 2 cut(s) 139, 290
PstI CTGCAG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 1898
PsuI RGATCY 3 cut(s) 1720, 1882, 1996
PteI GCGCGC 1 cut(s) 330
RsaI GTAC 7 cut(s) 9, 221, 1115, 1282, 1932, 2049, 2074
RsaNI GTAC 7 cut(s) 8, 220, 1114, 1281, 1931, 2048, 2073
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 7 cut(s) 899, 1014, 1461, 1506, 1565, 1664, 1973
SatI GCNGC 5 cut(s) 23, 594, 1299, 1488, 1590
Sau3AI GATC 7 cut(s) 1033, 1286, 1365, 1720, 1882, 1953, 1996
Sau96I GGNCC 2 cut(s) 139, 290
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 5 cut(s) 217, 340, 388, 1120, 2001
SduI GDGCHC 2 cut(s) 1353, 1519
SfaNI GCATC 8 cut(s) 280, 504, 564, 943, 1435, 1446, 1994, 2107
SfcI CTRYAG 3 cut(s) 20, 835, 1083
SfuI TTCGAA 1 cut(s) 1424
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
SphI GCATGC 1 cut(s) 1713
Sse9I AATT 8 cut(s) 450, 1003, 1410, 1908, 1979, 2023, 2039, 2129
SsiI CCGC 5 cut(s) 229, 276, 466, 593, 1431
SspMI CTAG 4 cut(s) 438, 1634, 1962, 2163
StyD4I CCNGG 5 cut(s) 215, 338, 386, 1118, 1999
StyI CCWWGG 1 cut(s) 1324
TaaI ACNGT 7 cut(s) 190, 307, 1280, 1597, 1706, 1780, 2155
TaqI TCGA 9 cut(s) 59, 147, 168, 224, 402, 711, 935, 1385, 1424
TaqII GACCGA 1 cut(s) 1722
TasI AATT 8 cut(s) 450, 1003, 1410, 1908, 1979, 2023, 2039, 2129
TatI WGTACW 3 cut(s) 1113, 1930, 2047
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 7 cut(s) 237, 299, 406, 989, 1382, 1575, 2014
Tru1I TTAA 7 cut(s) 899, 1014, 1461, 1506, 1565, 1664, 1973
Tru9I TTAA 7 cut(s) 899, 1014, 1461, 1506, 1565, 1664, 1973
TscAI CASTG 5 cut(s) 24, 134, 786, 1447, 1709
TseFI GTSAC 1 cut(s) 1183
TseI GCWGC 4 cut(s) 22, 1298, 1487, 1589
Tsp45I GTSAC 1 cut(s) 1183
TspRI CASTG 5 cut(s) 24, 134, 786, 1447, 1709
Van91I CCANNNNNTGG 1 cut(s) 853
VneI GTGCAC 1 cut(s) 1515
VpaK11BI GGWCC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 1506
XapI RAATTY 2 cut(s) 2023, 2129
XceI RCATGY 1 cut(s) 1713
XmiI GTMKAC 1 cut(s) 1744
XspI CTAG 4 cut(s) 438, 1634, 1962, 2163
Zsp2I ATGCAT 3 cut(s) 273, 916, 1715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.