Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008507

Physical Location & Seq

Genomic Coordinates Forward (+)

6133688 .. 6138327

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G082600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGTGGTGATTTCAGTGAAGCCCATCTTCACCATAGGGGTCCTCACTCTCTCTCTCATCCTCTCCGTGCTTCTCTTATCGCCTACTTCGCCTCTCTACAAAGCCCCTCTCTTTCTCACTTCACCCATGAACAAGTTGGATATATGGAGTGTTGGGAGGATGGTAGAATGGAGACCTTGCAAGTGGTGGCTACAAGGACACCTCACTGCTCTGCCATCAAAGAATAATGGATTCATTCGTGTGGATTGCTATGGTGGCCTTAATCAGATGAGAAGAGATTTATGTGATGGTGTTGGTATTGCCCGTCTTTTAAATGCAACCCTGGTTTTGCCAAAGTTTGAGGTGGCTGCTTATTGGAATGAATCAAGTGGTTTTGCAGATGTCTTTGATGTTGACTACTTCATTCAACAGATGAATGGCTTCATCAAAGTTGTGAAAGAGTTGCCGTCTGATATTTCATCAAAAGAACCCTTCCATGTAGATTGCAGCAAACGCAAAGGCCAATTTGATTACATTGAAAGTGTTCTTCCGTCGCTGCTAGAGCATCATTATATTTCAATCACGCCAGCAATGAGCCAAAGAAGGGATAGGTATCCTCAGTATGCAAAAGCTTCCCTTTGTCAAGCTTGTTACAGTGCATTACGCCTCACCAAATCCCTGGAGAAGAAAGCTTCCGAGCTTCTTGAAGCCATACCTAAACCTTTTCTATCACTTCACCTTCGTTTTGAGCCTGATATGGTAGCTTACAGTCAATGCGAATACCCAGACCTTTCGTCTGCCTCCATGGAAGCCATTGAAGCAGCACGGGGGGATAGAAAACCATGGACTGGAGAGGTGGCCCAAATTTGGAGGAAACGAGGGAAATGCCCTCTTACACCTAATGAGACAGCCTTCATACTTCAAGTGCTTTCCATCCCAACGAACACAAACATTTATCTGGCTGCTGGGGACGGTCTGATGGAAATTGAAGGATTAACATCTGTTTACACCAATGTATTTACCAAGTCTAGCCTTCTTAGTGGTGAGGATTTCAAAAGCATGCATGGGAACACGAAAGCTGCGTTGGATTACTACGTGTCTATTAACAGCGATTCGTATATAGCAACGTATTTTGGAAATATGGATAAGATGGTTGCAGCAATGCGAGCTTTTAATGGCTTGTACAAGACTCTTTTCTTAAGCAGAAGAGCTTTTGCAGAATTCACTTTTCAAGGTTTGAGAGGGAAGGAATTGATGAACGCTCTACGGAAGGCCCACAGAGATGATTTTGCCATGGGGAGAGGATCTGCTTTGCCTGATTGCTTTTGTGAGTTCAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

441

Amino Acids

49.56

Weight (kDa)

8.65

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52630 AT1G52630
fragaria_vesca	FvH4_6g30130 FvH4_6g30130
malus_domestica	MD17G1208100.v1.1
prunus_persica	Prupe.3G082600_v2.0.a1 Prupe.3G082600_v2.0.a1
pyrus_communis	pycom09g13880 pycom17g21060
rosa_chinensis	RchiOBHm_Chr2g0136181 RchiOBHm_Chr2g0136261
rosa_laevigata	RLG00000019512 RLG00000019519
rosa_multiflora	Rmu_sc0001998.1_g000031 Rmu_sc0002070.1_g000024
rosa_roxburghii	Rroxscaffold_2G00108420
rosa_rugosa	Rorug02G0328700 Rorug02G0328800
rosa_samantha	Rh2AG380300 Rh2BG387400 Rh2CG366400 Rh2DG403300
rosa_wichuraiana	Rw2G031120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	827
AclWI	GGATC	1 cut(s)	1291
AcsI	RAATTY	2 cut(s)	843, 1199
AfaI	GTAC	1 cut(s)	1163
AfiI	CCNNNNNNNGG	3 cut(s)	583, 827, 846
AflII	CTTAAG	1 cut(s)	1177
AflIII	ACRYGT	1 cut(s)	1074
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	2 cut(s)	321, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AluBI	AGCT	8 cut(s)	611, 626, 671, 679, 743, 1058, 1148, 1190
AluI	AGCT	8 cut(s)	611, 626, 671, 679, 743, 1058, 1148, 1190
Alw26I	GTCTC	2 cut(s)	166, 878
AlwI	GGATC	1 cut(s)	1291
AoxI	GGCC	4 cut(s)	256, 499, 837, 1251
ApeKI	GCWGC	7 cut(s)	347, 486, 535, 800, 941, 1058, 1136
ApoI	RAATTY	2 cut(s)	843, 1199
Asp700I	GAANNNNTTC	2 cut(s)	419, 522
AspS9I	GGNCC	3 cut(s)	40, 838, 1252
AsuHPI	GGTGA	6 cut(s)	19, 22, 114, 640, 707, 1034
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	7 cut(s)	334, 498, 522, 812, 928, 1045, 1148
BccI	CCATC	7 cut(s)	32, 154, 223, 281, 920, 952, 1123
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	846, 880
BciT130I	CCWGG	2 cut(s)	323, 659
BciVI	GTATCC	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	166, 878
BfaI	CTAG	2 cut(s)	539, 1008
BfrI	CTTAAG	1 cut(s)	1177
BfuI	GTATCC	1 cut(s)	603
BisI	GCNGC	7 cut(s)	348, 487, 536, 801, 942, 1059, 1137
BlsI	GCNGC	7 cut(s)	349, 488, 537, 802, 943, 1060, 1138
Bme1390I	CCNGG	2 cut(s)	323, 659
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	3 cut(s)	40, 838, 1252
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	323, 659
BmsI	GCATC	1 cut(s)	553
BpmI	CTGGAG	2 cut(s)	680, 849
BsaAI	YACGTR	1 cut(s)	1075
BsaBI	GATNNNNATC	2 cut(s)	591, 976
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	5 cut(s)	321, 657, 783, 821, 1272
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 827, 846
Bse1I	ACTGG	1 cut(s)	832
Bse3DI	GCAATG	2 cut(s)	576, 1146
Bse8I	GATNNNNATC	2 cut(s)	591, 976
BseBI	CCWGG	2 cut(s)	323, 659
BseDI	CCNNGG	5 cut(s)	321, 657, 783, 821, 1272
BseGI	GGATG	3 cut(s)	57, 165, 912
BseJI	GATNNNNATC	2 cut(s)	591, 976
BseLI	CCNNNNNNNGG	3 cut(s)	583, 827, 846
BseMI	GCAATG	2 cut(s)	576, 1146
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	1 cut(s)	832
BseXI	GCAGC	7 cut(s)	334, 498, 522, 812, 928, 1045, 1148
BseYI	CCCAGC	1 cut(s)	944
BshFI	GGCC	4 cut(s)	258, 501, 839, 1253
BslFI	GGGAC	1 cut(s)	962
BslI	CCNNNNNNNGG	3 cut(s)	583, 827, 846
BsmAI	GTCTC	2 cut(s)	166, 878
BsmFI	GGGAC	1 cut(s)	962
BsnI	GGCC	4 cut(s)	258, 501, 839, 1253
Bso31I	GGTCTC	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	1161
Bsp143I	GATC	1 cut(s)	1283
Bsp19I	CCATGG	3 cut(s)	783, 821, 1272
BspANI	GGCC	4 cut(s)	258, 501, 839, 1253
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	1291
BspQI	GCTCTTC	1 cut(s)	1180
BspTI	CTTAAG	1 cut(s)	1177
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	576, 1146
BsrGI	TGTACA	1 cut(s)	1161
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	5 cut(s)	321, 657, 783, 821, 1272
BssMI	GATC	1 cut(s)	1283
BssT1I	CCWWGG	3 cut(s)	783, 821, 1272
Bst2UI	CCWGG	2 cut(s)	323, 659
Bst4CI	ACNGT	3 cut(s)	635, 749, 953
Bst6I	CTCTTC	2 cut(s)	268, 1180
BstAFI	CTTAAG	1 cut(s)	1177
BstAUI	TGTACA	1 cut(s)	1161
BstBAI	YACGTR	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	567, 1040, 1146
BstDEI	CTNAG	2 cut(s)	597, 1016
BstDSI	CCRYGG	3 cut(s)	783, 821, 1272
BstF5I	GGATG	3 cut(s)	57, 165, 912
BstKTI	GATC	1 cut(s)	1286
BstMAI	GTCTC	2 cut(s)	166, 878
BstMBI	GATC	1 cut(s)	1283
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 255, 492, 541, 797, 1145
BstNI	CCWGG	2 cut(s)	323, 659
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	2 cut(s)	321, 657
BstV1I	GCAGC	7 cut(s)	334, 498, 522, 812, 928, 1045, 1148
BstX2I	RGATCY	1 cut(s)	1283
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	1283
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	258, 501, 839, 1253
BtgI	CCRYGG	3 cut(s)	783, 821, 1272
BtsCI	GGATG	3 cut(s)	57, 165, 912
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	21, 204, 640
Cac8I	GCNNGC	3 cut(s)	567, 1040, 1146
Cfr13I	GGNCC	3 cut(s)	40, 838, 1252
Csp6I	GTAC	1 cut(s)	1162
CviAII	CATG	7 cut(s)	127, 476, 784, 822, 1039, 1043, 1273
CviQI	GTAC	1 cut(s)	1162
DdeI	CTNAG	2 cut(s)	597, 1016
DpnI	GATC	1 cut(s)	1285
DpnII	GATC	1 cut(s)	1283
DraI	TTTAAA	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	2 cut(s)	268, 1180
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	2 cut(s)	268, 1180
Eco130I	CCWWGG	3 cut(s)	783, 821, 1272
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	1199
EcoRII	CCWGG	2 cut(s)	321, 657
EcoT14I	CCWWGG	3 cut(s)	783, 821, 1272
EcoT22I	ATGCAT	1 cut(s)	1044
ErhI	CCWWGG	3 cut(s)	783, 821, 1272
FaeI	CATG	7 cut(s)	130, 479, 787, 825, 1042, 1046, 1276
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 600, 632
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	7 cut(s)	126, 475, 783, 821, 1038, 1042, 1272
Fnu4HI	GCNGC	7 cut(s)	348, 487, 536, 801, 942, 1059, 1137
FokI	GGATG	3 cut(s)	44, 172, 899
Fsp4HI	GCNGC	7 cut(s)	348, 487, 536, 801, 942, 1059, 1137
FspBI	CTAG	2 cut(s)	539, 1008
GluI	GCNGC	7 cut(s)	348, 487, 536, 801, 942, 1059, 1137
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	2 cut(s)	680, 849
HaeIII	GGCC	4 cut(s)	258, 501, 839, 1253
Hin1II	CATG	7 cut(s)	130, 479, 787, 825, 1042, 1046, 1276
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	3 cut(s)	609, 624, 669
HinfI	GANTC	4 cut(s)	231, 362, 1091, 1168
HphI	GGTGA	6 cut(s)	19, 22, 114, 640, 707, 1034
Hpy166II	GTNNAC	2 cut(s)	394, 985
Hpy188I	TCNGA	4 cut(s)	267, 451, 676, 957
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	2 cut(s)	394, 985
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	8 cut(s)	481, 576, 728, 901, 962, 1022, 1219, 1243
HpyCH4III	ACNGT	3 cut(s)	635, 749, 953
HpyCH4IV	ACGT	2 cut(s)	1074, 1106
HpyCH4V	TGCA	9 cut(s)	180, 317, 377, 486, 605, 638, 1042, 1136, 1196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 255, 492, 541, 797, 1145
HpyF3I	CTNAG	2 cut(s)	597, 1016
HpySE526I	ACGT	2 cut(s)	1074, 1106
Hsp92II	CATG	7 cut(s)	130, 479, 787, 825, 1042, 1046, 1276
Kzo9I	GATC	1 cut(s)	1283
LguI	GCTCTTC	1 cut(s)	1180
Lsp1109I	GCAGC	7 cut(s)	334, 498, 522, 812, 928, 1045, 1148
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	539, 1008
MaeII	ACGT	2 cut(s)	1074, 1106
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	1 cut(s)	1285
MboI	GATC	1 cut(s)	1283
MboII	GAAGA	5 cut(s)	19, 285, 518, 676, 1197
MflI	RGATCY	1 cut(s)	1283
MluCI	AATT	6 cut(s)	503, 843, 963, 1199, 1229, 1316
MlyI	GAGTC	1 cut(s)	1162
MmeI	TCCRAC	2 cut(s)	117, 1044
Mph1103I	ATGCAT	1 cut(s)	1044
MroXI	GAANNNNTTC	2 cut(s)	419, 522
MseI	TTAA	6 cut(s)	261, 311, 974, 1083, 1152, 1178
MslI	CAYNNNNRTG	2 cut(s)	239, 1260
MspCI	CTTAAG	1 cut(s)	1177
MspR9I	CCNGG	2 cut(s)	323, 659
MvaI	CCWGG	2 cut(s)	323, 659
MwoI	GCNNNNNNNGC	6 cut(s)	88, 255, 492, 541, 797, 1145
NcoI	CCATGG	3 cut(s)	783, 821, 1272
NdeII	GATC	1 cut(s)	1283
NlaIII	CATG	7 cut(s)	130, 479, 787, 825, 1042, 1046, 1276
NlaIV	GGNNCC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	1044
NspI	RCATGY	1 cut(s)	1042
PaeI	GCATGC	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	1058
PdmI	GAANNNNTTC	2 cut(s)	419, 522
PfeI	GAWTC	3 cut(s)	231, 362, 1091
PflMI	CCANNNNNTGG	1 cut(s)	827
PkrI	GCNGC	7 cut(s)	349, 488, 537, 802, 943, 1060, 1138
PleI	GAGTC	1 cut(s)	1162
PpsI	GAGTC	1 cut(s)	1162
Ppu21I	YACGTR	1 cut(s)	1075
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	321, 657
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	321, 657
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	40, 838, 1252
PspPPI	RGGWCCY	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	1283
RsaI	GTAC	1 cut(s)	1163
RsaNI	GTAC	1 cut(s)	1162
RseI	CAYNNNNRTG	2 cut(s)	239, 1260
SapI	GCTCTTC	1 cut(s)	1180
SaqAI	TTAA	6 cut(s)	261, 311, 974, 1083, 1152, 1178
SatI	GCNGC	7 cut(s)	348, 487, 536, 801, 942, 1059, 1137
Sau3AI	GATC	1 cut(s)	1283
Sau96I	GGNCC	3 cut(s)	40, 838, 1252
SchI	GAGTC	1 cut(s)	1162
ScrFI	CCNGG	2 cut(s)	323, 659
SfaNI	GCATC	1 cut(s)	553
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	239, 1260
SmlI	CTYRAG	1 cut(s)	1177
SmoI	CTYRAG	1 cut(s)	1177
SphI	GCATGC	1 cut(s)	1042
Sse9I	AATT	6 cut(s)	503, 843, 963, 1199, 1229, 1316
SspMI	CTAG	2 cut(s)	539, 1008
StyD4I	CCNGG	2 cut(s)	321, 657
StyI	CCWWGG	3 cut(s)	783, 821, 1272
TaaI	ACNGT	3 cut(s)	635, 749, 953
TaiI	ACGT	2 cut(s)	1077, 1109
TasI	AATT	6 cut(s)	503, 843, 963, 1199, 1229, 1316
TatI	WGTACW	1 cut(s)	1161
TfiI	GAWTC	3 cut(s)	231, 362, 1091
Tru1I	TTAA	6 cut(s)	261, 311, 974, 1083, 1152, 1178
Tru9I	TTAA	6 cut(s)	261, 311, 974, 1083, 1152, 1178
TscAI	CASTG	3 cut(s)	21, 211, 640
TseI	GCWGC	7 cut(s)	347, 486, 535, 800, 941, 1058, 1136
TspDTI	ATGAA	9 cut(s)	143, 223, 375, 391, 412, 428, 447, 883, 1250
TspGWI	ACGGA	3 cut(s)	55, 519, 1261
TspRI	CASTG	3 cut(s)	21, 211, 640
Van91I	CCANNNNNTGG	1 cut(s)	827
Vha464I	CTTAAG	1 cut(s)	1177
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	843, 1199
XceI	RCATGY	1 cut(s)	1042
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmnI	GAANNNNTTC	2 cut(s)	419, 522
XspI	CTAG	2 cut(s)	539, 1008
Zsp2I	ATGCAT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.