RLG00000019519

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008507
Physical Location & Seq
Reverse (-)
53041559 .. 53043380
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019519

Sequence Viewer

Length: 1053 bp
ATGTATCATTTATGTGATGGTGTTGGTATTGCCCGTCTTTTAAATGAAACCTTTGTTTTGCCAAAGTTTGAGGTGGCTACTTATTGGAATGAATCAAGTGGCTTTGCAGATGTCTTTGATGTCGACTGCTTCATTCAACAGATGAATGGCTTCATCAGTGTTGTCAAAGAGTTACCATATGAGATTGCATCAAAAGAAGCCTTCCATGTGGATTGTAGCAAACGCAAAGGCCAAATTGATTACATAGAAAATGTTCTTCCATCCCTGTTAGAACATCATTATATTTCAATCACGCCAGCAATGAGCCAAAGAAGGGATAGGTATCCTCAGTATGCAAAAGCTGCCCTTTGCCAAGCATGTTACAGTGCTATACGCCTCACAAAATCCCTGGAGAAGAAAGCCTCGGAGCTTCTTGATGCCATACCTGAACCTTTTCTCTCGCTTCACCTTCGTTTTGAGCCGGATATGGTAGCTTATAGTCAATGTGAATACCCATACCTAGCTCCTACTTCTATTGAAGCCATCAAGGCAGCACAGGGAGATAGAAAGCCATGGACTGGAGAGCTTGCCCAAATTTGGAGGAAACGAGGAAAATGGCCTCTTACGCTTAATGAGACAGCCTTCATACTTCAAGTGCTTTCCATCCCAACAAGCACAGACATTTATCTGGCAGCTGGGGACGGTCTGATGGAAATTGAAGGATTAACATCTATTTACACCAGTGCAGTTACCAAATCTTGCCTACTTAGTGGTGAGGATTTCAAAATCATGCATGGAAACATGAAAGCGGCATTGGACTACTATGCGTCTATTAACAGTGATTCATATATAGCAACATATTTTGGAAACATGGATAAGATGGTTGCAGCAATGCGAGCTTTTAATTGCTTGTACAAGACTCTTTTCTTAAGCATAAGAGCTTTTGCTGAACTCACTTCTCAGGGGTTGAGAGGTAAGGAATTGGCGCATGCACTGTGGAAGGCTCACAAAGAGGATTTTGTCATGGGAAGAGGACCTGCTTTGCCAGATTGCATTTGTGAGTTCAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

351

Amino Acids

39.46

Weight (kDa)

5.95

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 3 - 294 1.3e-47 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 557
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 788
AcsI RAATTY 1 cut(s) 573
AfaI GTAC 1 cut(s) 893
AfiI CCNNNNNNNGG 3 cut(s) 313, 557, 576
AflII CTTAAG 1 cut(s) 907
AgsI TTSAA 7 cut(s) 137, 288, 518, 632, 698, 763, 1045
AjnI CCWGG 1 cut(s) 387
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AluBI AGCT 8 cut(s) 341, 409, 473, 503, 565, 674, 878, 920
AluI AGCT 8 cut(s) 341, 409, 473, 503, 565, 674, 878, 920
Alw26I GTCTC 1 cut(s) 608
AoxI GGCC 2 cut(s) 229, 596
ApeKI GCWGC 4 cut(s) 341, 530, 671, 866
ApoI RAATTY 1 cut(s) 573
Asp700I GAANNNNTTC 3 cut(s) 149, 252, 432
AspLEI GCGC 1 cut(s) 967
AspS9I GGNCC 1 cut(s) 1013
AsuHPI GGTGA 2 cut(s) 437, 764
AvaII GGWCC 1 cut(s) 1013
BbvI GCAGC 4 cut(s) 328, 542, 683, 878
BccI CCATC 6 cut(s) 11, 268, 530, 650, 682, 853
BciT130I CCWGG 1 cut(s) 389
BciVI GTATCC 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 907
BfuAI ACCTGC 1 cut(s) 1024
BfuI GTATCC 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 5 cut(s) 342, 531, 672, 789, 867
BlsI GCNGC 5 cut(s) 343, 532, 673, 790, 868
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 1 cut(s) 1013
BmgT120I GGNCC 1 cut(s) 1013
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 2 cut(s) 197, 406
BpmI CTGGAG 2 cut(s) 410, 579
BsaBI GATNNNNATC 2 cut(s) 321, 706
BsaJI CCNNGG 3 cut(s) 387, 402, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 557, 576
Bse1I ACTGG 2 cut(s) 562, 720
Bse3DI GCAATG 2 cut(s) 306, 876
Bse8I GATNNNNATC 2 cut(s) 321, 706
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 387, 402, 551
BseGI GGATG 2 cut(s) 260, 642
BseJI GATNNNNATC 2 cut(s) 321, 706
BseLI CCNNNNNNNGG 3 cut(s) 313, 557, 576
BseMI GCAATG 2 cut(s) 306, 876
BseMII CTCAG 2 cut(s) 341, 953
BseNI ACTGG 2 cut(s) 562, 720
BseXI GCAGC 4 cut(s) 328, 542, 683, 878
BseYI CCCAGC 1 cut(s) 674
BsgI GTGCAG 1 cut(s) 744
BshFI GGCC 2 cut(s) 231, 598
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 313, 557, 576
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 2 cut(s) 231, 598
Bsp1407I TGTACA 1 cut(s) 891
Bsp19I CCATGG 1 cut(s) 551
BspACI CCGC 1 cut(s) 788
BspANI GGCC 2 cut(s) 231, 598
BspCNI CTCAG 2 cut(s) 340, 952
BspMI ACCTGC 1 cut(s) 1024
BspTI CTTAAG 1 cut(s) 907
BsrDI GCAATG 2 cut(s) 306, 876
BsrGI TGTACA 1 cut(s) 891
BsrI ACTGG 2 cut(s) 562, 720
BssECI CCNNGG 3 cut(s) 387, 402, 551
BssT1I CCWWGG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 365, 683, 818, 975
Bst6I CTCTTC 1 cut(s) 1003
BstAFI CTTAAG 1 cut(s) 907
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 891
BstC8I GCNNGC 4 cut(s) 297, 567, 876, 969
BstDEI CTNAG 3 cut(s) 327, 746, 939
BstDSI CCRYGG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 260, 642
BstHHI GCGC 1 cut(s) 967
BstMAI GTCTC 1 cut(s) 608
BstMWI GCNNNNNNNGC 4 cut(s) 341, 527, 604, 875
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 360, 971
BstSCI CCNGG 1 cut(s) 387
BstV1I GCAGC 4 cut(s) 328, 542, 683, 878
BsuI GTATCC 1 cut(s) 333
BsuRI GGCC 2 cut(s) 231, 598
BtgI CCRYGG 1 cut(s) 551
BtsCI GGATG 2 cut(s) 260, 642
BtsIMutI CAGTG 5 cut(s) 163, 370, 727, 823, 971
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 4 cut(s) 297, 567, 876, 969
CfoI GCGC 1 cut(s) 967
Cfr13I GGNCC 1 cut(s) 1013
CseI GACGC 1 cut(s) 795
Csp6I GTAC 1 cut(s) 892
CviAII CATG 9 cut(s) 206, 357, 552, 769, 773, 781, 850, 968, 1003
CviQI GTAC 1 cut(s) 892
DdeI CTNAG 3 cut(s) 327, 746, 939
DraI TTTAAA 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 1003
Eco130I CCWWGG 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 1013
EcoO109I RGGNCCY 1 cut(s) 1013
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 551
EcoT22I ATGCAT 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 9 cut(s) 209, 360, 555, 772, 776, 784, 853, 971, 1006
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 692
FatI CATG 9 cut(s) 205, 356, 551, 768, 772, 780, 849, 967, 1002
FauNDI CATATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 5 cut(s) 342, 531, 672, 789, 867
FokI GGATG 2 cut(s) 247, 629
Fsp4HI GCNGC 5 cut(s) 342, 531, 672, 789, 867
FspBI CTAG 1 cut(s) 500
GlaI GCGC 1 cut(s) 966
GluI GCNGC 5 cut(s) 342, 531, 672, 789, 867
GsaI CCCAGC 1 cut(s) 678
GsuI CTGGAG 2 cut(s) 410, 579
HaeIII GGCC 2 cut(s) 231, 598
HapII CCGG 1 cut(s) 461
HgaI GACGC 1 cut(s) 795
HhaI GCGC 1 cut(s) 967
Hin1II CATG 9 cut(s) 209, 360, 555, 772, 776, 784, 853, 971, 1006
Hin6I GCGC 1 cut(s) 965
HinP1I GCGC 1 cut(s) 965
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 92, 821, 898
HpaII CCGG 1 cut(s) 461
HphI GGTGA 2 cut(s) 437, 764
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 406, 687
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 6 cut(s) 211, 306, 458, 631, 692, 973
HpyCH4III ACNGT 4 cut(s) 365, 683, 818, 975
HpyCH4V TGCA 8 cut(s) 107, 188, 335, 725, 772, 866, 971, 1032
HpyF10VI GCNNNNNNNGC 4 cut(s) 341, 527, 604, 875
HpyF3I CTNAG 3 cut(s) 327, 746, 939
Hsp92II CATG 9 cut(s) 209, 360, 555, 772, 776, 784, 853, 971, 1006
HspAI GCGC 1 cut(s) 965
LmnI GCTCC 2 cut(s) 406, 508
Lsp1109I GCAGC 4 cut(s) 328, 542, 683, 878
LweI GCATC 2 cut(s) 197, 406
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 3 cut(s) 171, 359, 727
MboII GAAGA 3 cut(s) 248, 406, 1020
MluCI AATT 6 cut(s) 234, 573, 693, 883, 959, 1046
MlyI GAGTC 1 cut(s) 892
Mph1103I ATGCAT 1 cut(s) 774
MroXI GAANNNNTTC 3 cut(s) 149, 252, 432
MseI TTAA 6 cut(s) 41, 609, 704, 813, 882, 908
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 674
MspCI CTTAAG 1 cut(s) 907
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 341, 527, 604, 875
NcoI CCATGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 178
NlaIII CATG 9 cut(s) 209, 360, 555, 772, 776, 784, 853, 971, 1006
NsiI ATGCAT 1 cut(s) 774
NspI RCATGY 2 cut(s) 360, 971
PaeI GCATGC 1 cut(s) 971
PdmI GAANNNNTTC 3 cut(s) 149, 252, 432
PfeI GAWTC 2 cut(s) 92, 821
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 343, 532, 673, 790, 868
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PpuMI RGGWCCY 1 cut(s) 1013
Psp5II RGGWCCY 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 387
PspPI GGNCC 1 cut(s) 1013
PspPPI RGGWCCY 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 1 cut(s) 893
RsaNI GTAC 1 cut(s) 892
RseI CAYNNNNRTG 1 cut(s) 12
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 6 cut(s) 41, 609, 704, 813, 882, 908
SatI GCNGC 5 cut(s) 342, 531, 672, 789, 867
Sau96I GGNCC 1 cut(s) 1013
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 1 cut(s) 389
SfaNI GCATC 2 cut(s) 197, 406
SinI GGWCC 1 cut(s) 1013
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 907
SmoI CTYRAG 1 cut(s) 907
SphI GCATGC 1 cut(s) 971
Sse9I AATT 6 cut(s) 234, 573, 693, 883, 959, 1046
SsiI CCGC 1 cut(s) 788
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 4 cut(s) 365, 683, 818, 975
TaqI TCGA 1 cut(s) 123
TasI AATT 6 cut(s) 234, 573, 693, 883, 959, 1046
TatI WGTACW 1 cut(s) 891
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 2 cut(s) 92, 821
Tru1I TTAA 6 cut(s) 41, 609, 704, 813, 882, 908
Tru9I TTAA 6 cut(s) 41, 609, 704, 813, 882, 908
TscAI CASTG 5 cut(s) 163, 370, 727, 823, 978
TseI GCWGC 4 cut(s) 341, 530, 671, 866
TspDTI ATGAA 8 cut(s) 60, 105, 121, 142, 158, 613, 797, 813
TspRI CASTG 5 cut(s) 163, 370, 727, 823, 978
Van91I CCANNNNNTGG 1 cut(s) 557
Vha464I CTTAAG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 1013
XapI RAATTY 1 cut(s) 573
XceI RCATGY 2 cut(s) 360, 971
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 3 cut(s) 149, 252, 432
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.