Rorug02G0328700

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005191
Physical Location & Seq
Forward (+)
40311345 .. 40314546
3202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0328700.1

Sequence Viewer

Length: 723 bp
ATGGGCCAACAGCGTTTCATTTTAATCCTCGGAATGCAGACGACATATTTGCCGAGTTTTTTTGGCACGAGAGGGGGAGGGTTTTCAAGTAGCTTGTTTGGTGATAGTAGCTTCTTTGGTGACGATGCATTTGCTTTTAGAGAAGGTGGAGGTGGTTCAATGAAATACGGTGGTCCTCGCAAAGCTTCTCCAATTGAGAACAGGTTGCCTTGTAGCCTTGAAGAGCTTTACAAAGGAACTAGCAAGAAGATGAAGATATCCAGATATATTGCTGACACCAGTGGGAAGGGCATGGAGGTGGAGGAAATTCTGACCATTGACATAAAACCTGGCTGGAAGAAGGGTACTAAAATTACCTTTCCAGAGAAAGGAAATGAACAGCCAAATGTTATTCCTGCAGATATTGTTTTCATTATTGACGAGAAGCCACACAGCGTGTTCACTCGTGATGGAAATGACTTGATAGTGACACAGAATATATCTTTGGTCGAGGCTCTTACTGGCTACACTGTCAATCTCACCACCCTGGATGGTAGGAGATTAACCATCCCAGTCAATAATGTAATTCATCCGAGCTATGAGGAGGTTGTTCCAGGGGAAGGAATGCCAATCCAGAAAGAACCCACCAAAAGAGGCAAGCTGAGAATAAAATTCAACATCAAGTTCCCAACAAGGTTGACAGCAGAGCAGAAGGCTGGAATCAAGAAGCTTTTAGGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

240

Amino Acids

26.53

Weight (kDa)

9.37

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 65 - 223 8.4e-41 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 306, 650
AdeI CACNNNGTG 1 cut(s) 436
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 368, 599
AgsI TTSAA 4 cut(s) 87, 159, 221, 655
AjnI CCWGG 3 cut(s) 328, 525, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 7 cut(s) 93, 111, 185, 226, 576, 640, 709
AluI AGCT 7 cut(s) 93, 111, 185, 226, 576, 640, 709
AoxI GGCC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 306, 650
ArsI GACNNNNNNTTYG 4 cut(s) 31, 63, 113, 145
AspS9I GGNCC 2 cut(s) 4, 173
AsuHPI GGTGA 3 cut(s) 113, 131, 511
AvaII GGWCC 1 cut(s) 173
BauI CACGAG 2 cut(s) 67, 444
BccI CCATC 3 cut(s) 443, 524, 554
BcgI CGANNNNNNTGC 4 cut(s) 31, 65, 113, 147
BciT130I CCWGG 3 cut(s) 330, 527, 594
BciVI GTATCC 1 cut(s) 710
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 710
Bme1390I CCNGG 3 cut(s) 330, 527, 594
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 4, 173
BmrFI CCNGG 3 cut(s) 330, 527, 594
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 28, 525, 593
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 599
Bse1I ACTGG 3 cut(s) 279, 505, 551
BseBI CCWGG 3 cut(s) 330, 527, 594
BseDI CCNNGG 3 cut(s) 28, 525, 593
BseGI GGATG 3 cut(s) 535, 546, 568
BseLI CCNNNNNNNGG 2 cut(s) 368, 599
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 3 cut(s) 279, 505, 551
BseRI GAGGAG 1 cut(s) 596
BshFI GGCC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 368, 599
BsmI GAATGC 2 cut(s) 39, 609
BsnI GGCC 1 cut(s) 6
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 400
BspQI GCTCTTC 1 cut(s) 216
BsrI ACTGG 3 cut(s) 279, 505, 551
BssECI CCNNGG 3 cut(s) 28, 525, 593
BssSI CACGAG 2 cut(s) 67, 444
Bst2BI CACGAG 2 cut(s) 67, 444
Bst2UI CCWGG 3 cut(s) 330, 527, 594
Bst4CI ACNGT 2 cut(s) 170, 511
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 1 cut(s) 641
BstF5I GGATG 3 cut(s) 535, 546, 568
BstNI CCWGG 3 cut(s) 330, 527, 594
BstSCI CCNGG 3 cut(s) 328, 525, 592
BstSFI CTRYAG 1 cut(s) 396
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 3 cut(s) 535, 546, 568
BtsIMutI CAGTG 2 cut(s) 286, 507
Cac8I GCNNGC 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 4, 173
Csp6I GTAC 1 cut(s) 345
CviAII CATG 1 cut(s) 292
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 1 cut(s) 641
DraIII CACNNNGTG 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 328, 525, 592
EcoRV GATATC 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 130
FaeI CATG 1 cut(s) 295
FaiI YATR 6 cut(s) 46, 267, 293, 323, 479, 579
FatI CATG 1 cut(s) 291
FokI GGATG 3 cut(s) 533, 542, 555
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 1 cut(s) 295
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HindIII AAGCTT 2 cut(s) 183, 707
HinfI GANTC 1 cut(s) 699
HphI GGTGA 3 cut(s) 113, 131, 511
Hpy166II GTNNAC 2 cut(s) 441, 678
Hpy188I TCNGA 3 cut(s) 32, 312, 573
Hpy188III TCNNGA 5 cut(s) 261, 362, 446, 613, 703
Hpy8I GTNNAC 2 cut(s) 441, 678
HpyAV CCTTC 5 cut(s) 137, 280, 334, 593, 685
HpyCH4III ACNGT 2 cut(s) 170, 511
HpyCH4V TGCA 3 cut(s) 37, 128, 398
HpyF3I CTNAG 1 cut(s) 641
Hsp92II CATG 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 216
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 119, 466
MboII GAAGA 4 cut(s) 233, 259, 265, 349
MfeI CAATTG 1 cut(s) 192
MluCI AATT 5 cut(s) 192, 306, 351, 564, 650
Mph1103I ATGCAT 1 cut(s) 130
MseI TTAA 2 cut(s) 23, 542
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 3 cut(s) 330, 527, 594
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 2 cut(s) 39, 609
MvaI CCWGG 3 cut(s) 330, 527, 594
NlaIII CATG 1 cut(s) 295
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 119, 466
NsiI ATGCAT 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 216
PctI GAATGC 2 cut(s) 39, 609
PfeI GAWTC 1 cut(s) 699
Psp6I CCWGG 3 cut(s) 328, 525, 592
PspGI CCWGG 3 cut(s) 328, 525, 592
PspPI GGNCC 2 cut(s) 4, 173
PstI CTGCAG 1 cut(s) 400
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 23, 542
Sau96I GGNCC 2 cut(s) 4, 173
ScrFI CCNGG 3 cut(s) 330, 527, 594
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 5 cut(s) 192, 306, 351, 564, 650
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 328, 525, 592
TaaI ACNGT 2 cut(s) 170, 511
TaqI TCGA 1 cut(s) 489
TasI AATT 5 cut(s) 192, 306, 351, 564, 650
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 2 cut(s) 23, 542
Tru9I TTAA 2 cut(s) 23, 542
TscAI CASTG 2 cut(s) 286, 514
TseFI GTSAC 2 cut(s) 119, 466
Tsp45I GTSAC 2 cut(s) 119, 466
TspDTI ATGAA 6 cut(s) 7, 176, 266, 390, 400, 557
TspRI CASTG 2 cut(s) 286, 514
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 306, 650
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.