Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Reverse (-)

17244185 .. 17245789

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGACTGCTCACGAATTTGGTTAGTATTTATTTGAATCACTGCACCAGATCCAAAGTCCTTGATCTTCGGGAGCTACACAAACTTGAACAAGTCGGTCTCAAAAATATGCTAGAGTTGGAGGATTGGAATGGAGAGTTTGAATTCCTCAAAAATCTAAAGATAGTTAACTGCCCCAAGTTGAAAAGCAGTTCAAATTGTGGGAAAACACTAGAGTTTCTGAAGATCAAAGGGTGTGAATCATTGGAACACCTTCTATTATCCAGGCGCAAGCTGAAGAGTATCACACTTGTTGACAATCCTGTTCTGATGCACTGGACTCATGATAGTGGTTTTCGTCTGGACAATATCTCTCTGTGGGTGCAATTCAGAATTCAAAATATATATCCCTCCTTCATCATGGAACATCTGGCATTGGATGCATGTTCTGCACATGCCTCCTTAGTGGGTTTGCCACCTCGTGGTGTCATTGGTCTACGGTTCTTGGTGATTTCCAATATCTCAAACCTCATATGTCTTCCAGATTGGGGTCTCCCCCAACTCAGAGCACTCTACGTCCGTGACTACGAAGCTCTTGAGTATTTATCCAACCAAAACAAGTCGTTCCAAGGATTCACCTCCCTCACAACACTCTCCATCCACAATTGTCCTAAGCTTGTAACACTGCCAGTTGAAGGCCTCCCAACATCTCTTAAATATTTGAGTATTGGCTCATGTGCAAGGCTCAAGTCATTTGGCCCGGCAGATGTACTCCAAAAGCTCTACTCCCTCCATCATCTATACATTGAGGATTGCCCTGCACTCCAGTCCTTGCCAGAGGAACGATGTGGGAAGGAAAGCGGTGATTGGCCCAAGATCAAACATATCCCTGATTTGGAAGTGAGGATGCCATCCACCAAAACAGCTACCTCATCACCATCATCTTCTTCAGCAGCTTGGTACCATCTGCACTTGCGGATGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

323

Amino Acids

36.48

Weight (kDa)

8.61

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	939
AccB1I	GGYRCC	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	475
AciI	CCGC	2 cut(s)	840, 955
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	16, 143, 372
AcuI	CTGAAG	3 cut(s)	242, 296, 912
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	750, 941
AfiI	CCNNNNNNNGG	4 cut(s)	461, 527, 674, 874
AgsI	TTSAA	7 cut(s)	37, 89, 143, 184, 195, 377, 674
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	7 cut(s)	76, 274, 572, 655, 760, 905, 935
AluI	AGCT	7 cut(s)	76, 274, 572, 655, 760, 905, 935
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	104, 536
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	676, 736, 848
ApeKI	GCWGC	1 cut(s)	932
ApoI	RAATTY	3 cut(s)	16, 143, 372
Asp700I	GAANNNNTTC	1 cut(s)	252
Asp718I	GGTACC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	737, 849
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	4 cut(s)	499, 607, 854, 906
BanI	GGYRCC	1 cut(s)	939
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	5 cut(s)	644, 780, 898, 925, 951
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	2 cut(s)	104, 536
BfaI	CTAG	2 cut(s)	113, 212
BisI	GCNGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	934
Bme1390I	CCNGG	2 cut(s)	265, 740
BmgT120I	GGNCC	2 cut(s)	737, 849
BmiI	GGNNCC	1 cut(s)	941
BmrFI	CCNGG	2 cut(s)	265, 740
BmsI	GCATC	3 cut(s)	300, 409, 876
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	596, 710
BpuMI	CCSGG	1 cut(s)	740
BsaI	GGTCTC	2 cut(s)	104, 536
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	461, 527, 674, 874
Bse1I	ACTGG	3 cut(s)	320, 668, 805
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	5 cut(s)	424, 636, 890, 891, 963
BseLI	CCNNNNNNNGG	4 cut(s)	461, 527, 674, 874
BseMII	CTCAG	1 cut(s)	556
BseNI	ACTGG	3 cut(s)	320, 668, 805
BseXI	GCAGC	1 cut(s)	944
BsgI	GTGCAG	4 cut(s)	28, 414, 783, 932
BshFI	GGCC	3 cut(s)	678, 738, 850
BshNI	GGYRCC	1 cut(s)	939
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	461, 527, 674, 874
BsmAI	GTCTC	2 cut(s)	104, 536
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	678, 738, 850
Bso31I	GGTCTC	2 cut(s)	104, 536
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	50, 64, 225, 855
BspACI	CCGC	2 cut(s)	840, 955
BspANI	GGCC	3 cut(s)	678, 738, 850
BspCNI	CTCAG	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	941
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	939
BspTNI	GGTCTC	2 cut(s)	104, 536
BsrI	ACTGG	3 cut(s)	320, 668, 805
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	4 cut(s)	50, 64, 225, 855
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	607
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	419, 428
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	3 cut(s)	442, 542, 651
BstF5I	GGATG	5 cut(s)	424, 636, 890, 891, 963
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	53, 67, 228, 858
BstMAI	GTCTC	2 cut(s)	104, 536
BstMBI	GATC	4 cut(s)	50, 64, 225, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 428
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	2 cut(s)	426, 437
BstSCI	CCNGG	2 cut(s)	263, 738
BstV1I	GCAGC	1 cut(s)	944
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	678, 738, 850
BtsCI	GGATG	5 cut(s)	424, 636, 890, 891, 963
BtsI	GCAGTG	2 cut(s)	40, 662
BtsIMutI	CAGTG	3 cut(s)	40, 313, 662
Cac8I	GCNNGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	737, 849
Csp6I	GTAC	2 cut(s)	749, 940
CviAII	CATG	5 cut(s)	323, 400, 423, 434, 714
CviQI	GTAC	2 cut(s)	749, 940
DdeI	CTNAG	3 cut(s)	442, 542, 651
DpnI	GATC	4 cut(s)	52, 66, 227, 857
DpnII	GATC	4 cut(s)	50, 64, 225, 855
DraIII	CACNNNGTG	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	678
Eco31I	GGTCTC	2 cut(s)	104, 536
Eco57I	CTGAAG	3 cut(s)	242, 296, 912
EcoRI	GAATTC	2 cut(s)	143, 372
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	326, 403, 426, 437, 717
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	322, 399, 422, 433, 713
FauNDI	CATATG	1 cut(s)	512
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	1 cut(s)	933
FokI	GGATG	4 cut(s)	431, 623, 877, 898
Fsp4HI	GCNGC	1 cut(s)	933
FspBI	CTAG	2 cut(s)	113, 212
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	933
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	3 cut(s)	678, 738, 850
HapII	CCGG	1 cut(s)	740
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	326, 403, 426, 437, 717
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	2 cut(s)	169, 295
HindII	GTYRAC	2 cut(s)	169, 295
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	37, 239, 319, 612
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	4 cut(s)	499, 607, 854, 906
Hpy166II	GTNNAC	3 cut(s)	169, 295, 476
Hpy188I	TCNGA	4 cut(s)	222, 309, 371, 545
Hpy188III	TCNNGA	6 cut(s)	13, 71, 323, 341, 521, 575
Hpy8I	GTNNAC	3 cut(s)	169, 295, 476
HpyAV	CCTTC	4 cut(s)	263, 403, 668, 826
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	8 cut(s)	45, 313, 364, 422, 431, 719, 800, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 428
HpyF3I	CTNAG	3 cut(s)	442, 542, 651
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	5 cut(s)	326, 403, 426, 437, 717
HspAI	GCGC	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	943
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	50, 64, 225, 855
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	3 cut(s)	300, 409, 876
MaeI	CTAG	2 cut(s)	113, 212
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	560, 658
MalI	GATC	4 cut(s)	52, 66, 227, 857
MboI	GATC	4 cut(s)	50, 64, 225, 855
MboII	GAAGA	6 cut(s)	59, 235, 289, 509, 915, 918
MfeI	CAATTG	1 cut(s)	643
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	6 cut(s)	16, 143, 196, 365, 372, 643
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	99, 612
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	168, 693
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	2 cut(s)	265, 740
MunI	CAATTG	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	419, 428
NciI	CCSGG	1 cut(s)	740
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	4 cut(s)	50, 64, 225, 855
NlaIII	CATG	5 cut(s)	326, 403, 426, 437, 717
NlaIV	GGNNCC	1 cut(s)	941
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	2 cut(s)	426, 437
PagI	TCATGA	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	37, 239, 612
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	934
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	941
PspPI	GGNCC	2 cut(s)	737, 849
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	750, 941
RsaNI	GTAC	2 cut(s)	749, 940
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	168, 693
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	4 cut(s)	50, 64, 225, 855
Sau96I	GGNCC	2 cut(s)	737, 849
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	265, 740
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	300, 409, 876
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	575, 725
SmoI	CTYRAG	2 cut(s)	575, 725
Sse9I	AATT	6 cut(s)	16, 143, 196, 365, 372, 643
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	2 cut(s)	840, 955
SspI	AATATT	1 cut(s)	698
SspMI	CTAG	2 cut(s)	113, 212
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	263, 738
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	558
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	6 cut(s)	16, 143, 196, 365, 372, 643
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	3 cut(s)	37, 239, 612
Tru1I	TTAA	2 cut(s)	168, 693
Tru9I	TTAA	2 cut(s)	168, 693
TscAI	CASTG	3 cut(s)	47, 320, 669
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	385
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	3 cut(s)	47, 320, 669
Van91I	CCANNNNNTGG	1 cut(s)	461
XapI	RAATTY	3 cut(s)	16, 143, 372
XceI	RCATGY	2 cut(s)	426, 437
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	113, 212
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.