Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Forward (+)

117788 .. 119344

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

atggcttcagtagttattcccctcgcaactcctgttgtgcggcttgcactaactaaattgacctcttttgtcaccaccgaggtttctgcattcaatcatgtcaaggatgaaatagaaacgctgaagaacactttaacagaaattcaagctgtgcttacaaggttggaggcagttcagcagagttcttccatggagtggttcaacaggcttcgagtagctgcttatgatgcagatgatctaatttactcctgggcgacaaggtatcaccaatggagcatgaagaaggaggtacaaataatccatcttccctttagtacttcaaactttctgtttcagtatcttcaatcccgtaagttgagaaagattatagcgacactaaataagattttggaagatggacaacgctataaaaacattactgacactcccatgcctacaactggaaatccttcacaatcacagcaaactggctctgtttcaagcagtttagttgttagcagggaagaagataaagaaaagataataagactgctgacaacggatgaagaatccagtgaggggcaaaacatttcttttattcccattgtaggcatgggaggtttggggaaaacaactcttgctcagcttgtatataacgatgacaggatgaatcagactttcgaaactaaaatatgggtttgtgtgacggacaattttgacatcaagaggattttcagagaaatagtgatgtctcaaatgtctaaaaaaataattggccatgatgccaactctatctccgtcgacaaactagaaacccatgctaaggatatcctggcacaaaaaaggtttttacttgtcctagatgatttatggacttacaaccatgtggatttggagccccttgaaaaaatcttagttcaaggcggcaggggaagcaaggttctggtgactagtaggatctcagaaatttcaactctcaagtattcaaaatccgcttattttctgcaatgtttgggtgatactgaatcatggtcgttgtttcaaaacatagcattcaaagaacaccttttgacaggtcgtgtacgtgaggagttggaagtgtatggaaaagaaattgtgagcaagtgcaaaggtttacctctggcagtgaaacaaatgggaggtctgctatgtgggaatactgatgtaaatcgatggaagaatatcaagtcaagtcaaacatgggaagtaggggatgatagagtactgcctgctcttagattgagttacgatcatctgctaccaaatcacaagcagtgcttcgcatactgttccttgttcccaaaggcttatgtttatgaaaaggatgaattggtcaaactatggatggcagaagcattaattgagcctaataatagagaaagaacagaagtcatcggaagcacatacttgaaggagctgtcaaacaggttcttttttgagcgcgaagatgagacaaagtataggatgcatgatgttatccatgacttggcacaagagatctccagtcccttctgttgccaagtgaaggataagaaagatattatgacacctgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

518

Amino Acids

59.43

Weight (kDa)

6.63

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	195, 1486
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	1443
AciI	CCGC	3 cut(s)	40, 903, 972
AclWI	GGATC	1 cut(s)	944
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	2 cut(s)	141, 945
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	291, 316, 1062, 1224
AfiI	CCNNNNNNNGG	7 cut(s)	195, 440, 558, 587, 802, 1486, 1525
AhlI	ACTAGT	1 cut(s)	929
AjnI	CCWGG	2 cut(s)	248, 810
AloI	GAACNNNNNNTCC	2 cut(s)	903, 935
AluBI	AGCT	4 cut(s)	149, 218, 625, 1417
AluI	AGCT	4 cut(s)	149, 218, 625, 1417
Alw26I	GTCTC	2 cut(s)	735, 1445
AlwI	GGATC	1 cut(s)	944
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	141, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	1126, 1158
AseI	ATTAAT	1 cut(s)	1358
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	1443
AsuHPI	GGTGA	4 cut(s)	64, 257, 937, 1007
AsuII	TTCGAA	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	4 cut(s)	309, 389, 1167, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	250, 812
BcoDI	GTCTC	2 cut(s)	735, 1445
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	3 cut(s)	788, 839, 930
BglII	AGATCT	1 cut(s)	1497
BisI	GCNGC	3 cut(s)	41, 219, 904
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	3 cut(s)	42, 220, 905
BmcAI	AGTACT	2 cut(s)	316, 1224
Bme1390I	CCNGG	2 cut(s)	250, 812
BmiI	GGNNCC	1 cut(s)	876
BmrFI	CCNGG	2 cut(s)	250, 812
BmsI	GCATC	3 cut(s)	217, 751, 1455
BpmI	CTGGAG	1 cut(s)	1486
Bpu10I	CCTNAGC	1 cut(s)	801
Bpu1102I	GCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	1171
BsaAI	YACGTR	1 cut(s)	1064
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaJI	CCNNGG	3 cut(s)	78, 189, 249
BsaXI	ACNNNNNCTCC	4 cut(s)	409, 439, 758, 788
Bsc4I	CCNNNNNNNGG	7 cut(s)	195, 440, 558, 587, 802, 1486, 1525
Bse1I	ACTGG	4 cut(s)	445, 472, 552, 1503
Bse3DI	GCAATG	1 cut(s)	992
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	2 cut(s)	250, 812
BseCI	ATCGAT	1 cut(s)	1171
BseDI	CCNNGG	3 cut(s)	78, 189, 249
BseGI	GGATG	7 cut(s)	112, 547, 651, 1219, 1330, 1350, 1470
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	7 cut(s)	195, 440, 558, 587, 802, 1486, 1525
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	2 cut(s)	635, 954
BseNI	ACTGG	4 cut(s)	445, 472, 552, 1503
BseRI	GAGGAG	1 cut(s)	1082
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	1443
BshFI	GGCC	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	1171
BslFI	GGGAC	1 cut(s)	1491
BslI	CCNNNNNNNGG	7 cut(s)	195, 440, 558, 587, 802, 1486, 1525
BsmAI	GTCTC	2 cut(s)	735, 1445
BsmFI	GGGAC	1 cut(s)	1491
BsmI	GAATGC	2 cut(s)	89, 1031
BsnI	GGCC	1 cut(s)	756
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	4 cut(s)	235, 936, 1249, 1497
Bsp1720I	GCTNAGC	1 cut(s)	621
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	40, 903, 972
BspANI	GGCC	1 cut(s)	756
BspCNI	CTCAG	2 cut(s)	634, 953
BspDI	ATCGAT	1 cut(s)	1171
BspFNI	CGCG	1 cut(s)	1443
BspLI	GGNNCC	1 cut(s)	876
BspPI	GGATC	1 cut(s)	944
BspT104I	TTCGAA	1 cut(s)	660
BsrDI	GCAATG	1 cut(s)	992
BsrI	ACTGG	4 cut(s)	445, 472, 552, 1503
BssECI	CCNNGG	3 cut(s)	78, 189, 249
BssMI	GATC	4 cut(s)	235, 936, 1249, 1497
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	250, 812
Bst4CI	ACNGT	1 cut(s)	1289
BstBAI	YACGTR	1 cut(s)	1064
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	2 cut(s)	45, 1230
BstDEI	CTNAG	5 cut(s)	621, 801, 892, 940, 1235
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	7 cut(s)	112, 547, 651, 1219, 1330, 1350, 1470
BstFNI	CGCG	1 cut(s)	1443
BstHHI	GCGC	1 cut(s)	1443
BstKTI	GATC	4 cut(s)	238, 939, 1252, 1500
BstMAI	GTCTC	2 cut(s)	735, 1445
BstMBI	GATC	4 cut(s)	235, 936, 1249, 1497
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 912
BstNI	CCWGG	2 cut(s)	250, 812
BstSCI	CCNGG	2 cut(s)	248, 810
BstUI	CGCG	1 cut(s)	1443
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	2 cut(s)	936, 1497
BstYI	RGATCY	2 cut(s)	936, 1497
Bsu15I	ATCGAT	1 cut(s)	1171
BsuRI	GGCC	1 cut(s)	756
BsuTUI	ATCGAT	1 cut(s)	1171
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	7 cut(s)	112, 547, 651, 1219, 1330, 1350, 1470
BtsI	GCAGTG	2 cut(s)	1131, 1280
BtsIMutI	CAGTG	3 cut(s)	559, 1131, 1280
Cac8I	GCNNGC	2 cut(s)	45, 1230
CfoI	GCGC	1 cut(s)	1443
ClaI	ATCGAT	1 cut(s)	1171
Csp6I	GTAC	4 cut(s)	290, 315, 1061, 1223
CviQI	GTAC	4 cut(s)	290, 315, 1061, 1223
DdeI	CTNAG	5 cut(s)	621, 801, 892, 940, 1235
DpnI	GATC	4 cut(s)	237, 938, 1251, 1499
DpnII	GATC	4 cut(s)	235, 936, 1249, 1497
EaeI	YGGCCR	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	248, 810
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	1470
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	189
FalI	AAGNNNNNCTT	6 cut(s)	138, 170, 1029, 1061, 1262, 1294
FaqI	GGGAC	1 cut(s)	1491
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	3 cut(s)	41, 219, 904
FokI	GGATG	7 cut(s)	119, 554, 658, 1226, 1337, 1357, 1477
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	3 cut(s)	41, 219, 904
FspBI	CTAG	3 cut(s)	788, 839, 930
GlaI	GCGC	1 cut(s)	1442
GluI	GCNGC	3 cut(s)	41, 219, 904
GsuI	CTGGAG	1 cut(s)	1486
HaeIII	GGCC	1 cut(s)	756
HhaI	GCGC	1 cut(s)	1443
Hin6I	GCGC	1 cut(s)	1441
HinP1I	GCGC	1 cut(s)	1441
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	3 cut(s)	548, 649, 1004
HphI	GGTGA	4 cut(s)	64, 257, 937, 1007
Hpy166II	GTNNAC	3 cut(s)	781, 1061, 1115
Hpy188I	TCNGA	4 cut(s)	654, 716, 943, 1397
Hpy188III	TCNNGA	1 cut(s)	703
Hpy8I	GTNNAC	3 cut(s)	781, 1061, 1115
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	5 cut(s)	277, 459, 1405, 1519, 1519
HpyCH4III	ACNGT	1 cut(s)	1289
HpyCH4IV	ACGT	1 cut(s)	1063
HpyCH4V	TGCA	6 cut(s)	47, 89, 230, 985, 1107, 1468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 912
HpyF3I	CTNAG	5 cut(s)	621, 801, 892, 940, 1235
HpySE526I	ACGT	1 cut(s)	1063
HspAI	GCGC	1 cut(s)	1441
Kzo9I	GATC	4 cut(s)	235, 936, 1249, 1497
LmnI	GCTCC	3 cut(s)	273, 874, 1414
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	217, 751, 1455
MaeI	CTAG	3 cut(s)	788, 839, 930
MaeII	ACGT	1 cut(s)	1063
MaeIII	GTNAC	4 cut(s)	70, 682, 925, 1244
MalI	GATC	4 cut(s)	237, 938, 1251, 1499
MboI	GATC	4 cut(s)	235, 936, 1249, 1497
MflI	RGATCY	2 cut(s)	936, 1497
MhlI	GDGCHC	1 cut(s)	879
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	9 cut(s)	56, 141, 240, 691, 750, 945, 1092, 1328, 1359
MluNI	TGGCCA	1 cut(s)	756
MmeI	TCCRAC	2 cut(s)	144, 1053
Mox20I	TGGCCA	1 cut(s)	756
Mph1103I	ATGCAT	1 cut(s)	1470
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	3 cut(s)	134, 1358, 1555
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	756
MspR9I	CCNGG	2 cut(s)	250, 812
Mva1269I	GAATGC	2 cut(s)	89, 1031
MvaI	CCWGG	2 cut(s)	250, 812
MvnI	CGCG	1 cut(s)	1443
MwoI	GCNNNNNNNGC	2 cut(s)	227, 912
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	235, 936, 1249, 1497
NlaIV	GGNNCC	1 cut(s)	876
NmuCI	GTSAC	3 cut(s)	70, 682, 925
NsiI	ATGCAT	1 cut(s)	1470
NspV	TTCGAA	1 cut(s)	660
PctI	GAATGC	2 cut(s)	89, 1031
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	548, 649, 1004
PflMI	CCANNNNNTGG	2 cut(s)	195, 1486
PkrI	GCNGC	3 cut(s)	42, 220, 905
Ppu21I	YACGTR	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	1358
Psp6I	CCWGG	2 cut(s)	248, 810
PspGI	CCWGG	2 cut(s)	248, 810
PspN4I	GGNNCC	1 cut(s)	876
PsuI	RGATCY	2 cut(s)	936, 1497
RsaI	GTAC	4 cut(s)	291, 316, 1062, 1224
RsaNI	GTAC	4 cut(s)	290, 315, 1061, 1223
RseI	CAYNNNNRTG	1 cut(s)	428
SalI	GTCGAC	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	134, 1358, 1555
SatI	GCNGC	3 cut(s)	41, 219, 904
Sau3AI	GATC	4 cut(s)	235, 936, 1249, 1497
ScaI	AGTACT	2 cut(s)	316, 1224
ScrFI	CCNGG	2 cut(s)	250, 812
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	3 cut(s)	217, 751, 1455
SfuI	TTCGAA	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SpeI	ACTAGT	1 cut(s)	929
Sse9I	AATT	9 cut(s)	56, 141, 240, 691, 750, 945, 1092, 1328, 1359
SsiI	CCGC	3 cut(s)	40, 903, 972
SspMI	CTAG	3 cut(s)	788, 839, 930
StyD4I	CCNGG	2 cut(s)	248, 810
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	1289
TaiI	ACGT	1 cut(s)	1066
TaqI	TCGA	4 cut(s)	211, 660, 780, 1171
TasI	AATT	9 cut(s)	56, 141, 240, 691, 750, 945, 1092, 1328, 1359
TatI	WGTACW	2 cut(s)	314, 1222
TauI	GCSGC	2 cut(s)	43, 906
TfiI	GAWTC	3 cut(s)	548, 649, 1004
Tru1I	TTAA	3 cut(s)	134, 1358, 1555
Tru9I	TTAA	3 cut(s)	134, 1358, 1555
TscAI	CASTG	3 cut(s)	559, 1131, 1280
TseFI	GTSAC	3 cut(s)	70, 682, 925
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	70, 682, 925
TspDTI	ATGAA	6 cut(s)	123, 293, 558, 662, 1332, 1341
TspGWI	ACGGA	3 cut(s)	554, 701, 766
TspRI	CASTG	3 cut(s)	559, 1131, 1280
Van91I	CCANNNNNTGG	2 cut(s)	195, 1486
VspI	ATTAAT	1 cut(s)	1358
XapI	RAATTY	2 cut(s)	141, 945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	3 cut(s)	788, 839, 930
ZrmI	AGTACT	2 cut(s)	316, 1224
Zsp2I	ATGCAT	1 cut(s)	1470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.