Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Reverse (-)

17246287 .. 17248167

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGAGGATTTGATTGACTGCTGGACAACAGAATATCAACGGTGGAAGATGAAGCAGCAGCAGTTGTTAGTCGGGATGGGAGGATTGGGTAAAACAACTCTTGCCCAACTTGTCTTTAATGATGAAGATGTTGATCGGTATTTCGATTTTAGAATTTGGGTTTTTGTGGGGAACGAATTTGACATGAAGAGGATTTTCAGTGAAATACTGGTCTCTCTAGAGCGTTCATTAACTTCGAAAAGAAGAAAAGCAACAAAGTCTTTAAAAGATATGATCAAGGAAAAAGAATCTCAACCCGAAACCCCTGTTGATCTCACCCTCTTGGCCAAACTACAAACCTTGTTTAAAGATGACAGTCCTCTCGATTGGAACCAACTACGTTCTCCTAATGATCTCTACTCTTTGCCCCATCTAAAAGACCTTGATCGTCAGTACTCCAATTCCTTGGACCGATTACAAACCCGTCCTGAGATTATTGATTATACCCCTCTCTCCTTGGCCCAACTACAAACTCGCATTCTTGAACTTCTGACTCAGAAACGATTTTTACTTGTTCTAGACGACCTATGGAATCATAAAGATGAGGAATTGGAGCCACTAGTAAAGGTCTTAAATCATAGGGCTTACGGAAGTAAGGTTCTGGTGACTAGTCGGCTAAAAGTAGTTTCAAATATTATGGATTCAGCGTCACCCTATTCTCTGCAATGTTTGGGTGATCAGGAGTCATGGTGGTTGTTTAAAGAATTGGCATTCAAAAAAGGTAGTAAGATCGGTAGAGAGTTTGAAAATTGTGGGAAGGAAATTGTAGGTATGTGTCAGGGTCTTCCTTTGGCTATAAAACAAATGGCAGGTCTGTTACGTGGGAAAGAACTGAAAGAACGGAAAAATGTTGCCGAAAGTAAAACATGGAAAGCACGAGTAGAAGATACTCAAATACTGCCTGCTCTTAGATTGAGTTATAATCACCTGCCCTCACCAGATCACAAGCAGTGCTTTTCATTGTGTTCCCTGTTTCCGAAATCGTATCTTTATGAAAAGGATGAGTTGGTCAAGTTATGGATGGCAGAAGGATTTATACAACCACCTAAGCATGGAGTGGGAGAGAGGATAGAAGACATCGGAAGTCGATACTTCAAGGAGCTGTCAGACAGGTTCTTCTTCGAATGCTCAGCTGAAGACAACACAAAGTATAGGATGCATGATCTTATCCATGACTTGGCACAATCAGTTTCCAGTCCCTTTTTTTGCCAAGTTAAGGATATGAAAGATTTTGATGAAAAGTCTCGCCATGTATCACTGCTTCAAGAACAACTTGAGAAGCCTACAATAGAGATCATCAACAAATCGAGGAAGCTGCGCACACTTTTACTTCCAGTTCAAACCTTGCAGCTGAGAGCCTTTGGGAAAGGACAGGGTGAAATAATTCATTCACTTATGTATATGTGTGTGCTAGACATGAGTTCAAGCACAGTTGTCACACTGCCAGATTCAATTGGGAGGCTGAAGCTCTTGCGCTACCTCGATTTATCGACAACTGAAATCAGAAAGCTCCCTGATTCGGTGTGCAACCTCTTCAATTTGGAGACAGCTGAAACTTTTTTGTTGTCCTTGGATTTTCAATTTGCCCAAGAACTTGAAAAATCTTGTCAACCTGAGACATCTGGAGCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

558

Amino Acids

64.58

Weight (kDa)

6.42

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	23 - 93	8.8e-15	NB-ARC domain
NB-ARC	PF00931	166 - 253	1.3e-17	NB-ARC domain
WHD_DRP	PF23559	337 - 407	8.9e-24	Disease resistance protein Winged helix domain
LRR_14	PF23598	472 - 527	7.3e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AarI	CACCTGC	1 cut(s)	975
Acc16I	TGCGCA	1 cut(s)	1358
Acc36I	ACCTGC	2 cut(s)	839, 975
AccB7I	CCANNNNNTGG	1 cut(s)	1216
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	153, 176
AcuI	CTGAAG	2 cut(s)	1194, 1523
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	1091, 1216, 1255, 1558
AhlI	ACTAGT	2 cut(s)	598, 647
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	8 cut(s)	1141, 1172, 1354, 1390, 1507, 1549, 1589, 1667
AluI	AGCT	8 cut(s)	1141, 1172, 1354, 1390, 1507, 1549, 1589, 1667
Alw26I	GTCTC	4 cut(s)	217, 1287, 1577, 1649
AoxI	GGCC	2 cut(s)	324, 498
ApeKI	GCWGC	4 cut(s)	55, 58, 1354, 1387
ApoI	RAATTY	2 cut(s)	153, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	835, 867
Asp700I	GAANNNNTTC	1 cut(s)	1422
AspLEI	GCGC	2 cut(s)	1359, 1515
AspS9I	GGNCC	2 cut(s)	448, 499
AsuHPI	GGTGA	7 cut(s)	307, 655, 681, 725, 956, 966, 1427
AsuII	TTCGAA	2 cut(s)	236, 1161
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	326
BarI	GAAGNNNNNNTAC	4 cut(s)	1059, 1091, 1284, 1316
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	3 cut(s)	815, 1119, 1182
BbvI	GCAGC	4 cut(s)	67, 70, 1341, 1399
BccI	CCATC	3 cut(s)	70, 417, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	1336, 1370
BclI	TGATCA	2 cut(s)	273, 715
BcoDI	GTCTC	4 cut(s)	217, 1287, 1577, 1649
BcuI	ACTAGT	2 cut(s)	598, 647
BfaI	CTAG	5 cut(s)	218, 557, 599, 648, 1451
BfuAI	ACCTGC	2 cut(s)	839, 975
BisI	GCNGC	4 cut(s)	56, 59, 1355, 1388
BlpI	GCTNAGC	1 cut(s)	1168
BlsI	GCNGC	4 cut(s)	57, 60, 1356, 1389
BmcAI	AGTACT	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	448, 499
BmiI	GGNNCC	2 cut(s)	371, 594
BmsI	GCATC	1 cut(s)	1185
BpiI	GAAGAC	3 cut(s)	815, 1119, 1182
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu1102I	GCTNAGC	1 cut(s)	1168
Bpu14I	TTCGAA	2 cut(s)	236, 1161
BpuEI	CTTGAG	1 cut(s)	1334
BsaAI	YACGTR	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	444, 495, 1608
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	1091, 1216, 1255, 1558
Bse1I	ACTGG	3 cut(s)	213, 1233, 1373
Bse3DI	GCAATG	1 cut(s)	710
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	444, 495, 1608
BseGI	GGATG	4 cut(s)	81, 1045, 1065, 1200
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	4 cut(s)	1091, 1216, 1255, 1558
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	5 cut(s)	459, 548, 1182, 1382, 1644
BseNI	ACTGG	3 cut(s)	213, 1233, 1373
BseXI	GCAGC	4 cut(s)	67, 70, 1341, 1399
BshFI	GGCC	2 cut(s)	326, 500
BslFI	GGGAC	1 cut(s)	1221
BslI	CCNNNNNNNGG	4 cut(s)	1091, 1216, 1255, 1558
BsmAI	GTCTC	4 cut(s)	217, 1287, 1577, 1649
BsmFI	GGGAC	1 cut(s)	1221
BsmI	GAATGC	3 cut(s)	516, 749, 1169
BsnI	GGCC	2 cut(s)	326, 500
Bso31I	GGTCTC	1 cut(s)	217
Bsp119I	TTCGAA	2 cut(s)	236, 1161
Bsp1720I	GCTNAGC	1 cut(s)	1168
BspANI	GGCC	2 cut(s)	326, 500
BspCNI	CTCAG	5 cut(s)	460, 547, 1181, 1383, 1645
BspLI	GGNNCC	2 cut(s)	371, 594
BspMI	ACCTGC	2 cut(s)	839, 975
BspT104I	TTCGAA	2 cut(s)	236, 1161
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	213, 1233, 1373
BssECI	CCNNGG	3 cut(s)	444, 495, 1608
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	3 cut(s)	444, 495, 1608
Bst2BI	CACGAG	1 cut(s)	915
Bst4CI	ACNGT	3 cut(s)	42, 356, 1471
Bst6I	CTCTTC	2 cut(s)	182, 1577
BstBAI	YACGTR	1 cut(s)	860
BstBI	TTCGAA	2 cut(s)	236, 1161
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	7 cut(s)	468, 534, 947, 1086, 1168, 1391, 1653
BstF5I	GGATG	4 cut(s)	81, 1045, 1065, 1200
BstHHI	GCGC	2 cut(s)	1359, 1515
BstMAI	GTCTC	4 cut(s)	217, 1287, 1577, 1649
BstV1I	GCAGC	4 cut(s)	67, 70, 1341, 1399
BstV2I	GAAGAC	3 cut(s)	815, 1119, 1182
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	326, 500
BtsCI	GGATG	4 cut(s)	81, 1045, 1065, 1200
BtsI	GCAGTG	3 cut(s)	995, 1295, 1478
BtsIMutI	CAGTG	4 cut(s)	205, 995, 1295, 1478
BveI	ACCTGC	2 cut(s)	839, 975
Cac8I	GCNNGC	1 cut(s)	942
CfoI	GCGC	2 cut(s)	1359, 1515
Cfr13I	GGNCC	2 cut(s)	448, 499
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	8 cut(s)	184, 726, 906, 1091, 1199, 1211, 1289, 1456
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	7 cut(s)	468, 534, 947, 1086, 1168, 1391, 1653
DraI	TTTAAA	3 cut(s)	264, 346, 739
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	182, 1577
EarI	CTCTTC	2 cut(s)	182, 1577
Eco130I	CCWWGG	3 cut(s)	444, 495, 1608
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	1194, 1523
EcoT14I	CCWWGG	3 cut(s)	444, 495, 1608
EcoT22I	ATGCAT	1 cut(s)	1200
ErhI	CCWWGG	3 cut(s)	444, 495, 1608
FaeI	CATG	8 cut(s)	187, 729, 909, 1094, 1202, 1214, 1292, 1459
FalI	AAGNNNNNCTT	4 cut(s)	977, 1009, 1296, 1328
FaqI	GGGAC	1 cut(s)	1221
FatI	CATG	8 cut(s)	183, 725, 905, 1090, 1198, 1210, 1288, 1455
FbaI	TGATCA	2 cut(s)	273, 715
Fnu4HI	GCNGC	4 cut(s)	56, 59, 1355, 1388
FokI	GGATG	4 cut(s)	88, 1052, 1072, 1207
Fsp4HI	GCNGC	4 cut(s)	56, 59, 1355, 1388
FspBI	CTAG	5 cut(s)	218, 557, 599, 648, 1451
FspI	TGCGCA	1 cut(s)	1358
GlaI	GCGC	2 cut(s)	1358, 1514
GluI	GCNGC	4 cut(s)	56, 59, 1355, 1388
HaeIII	GGCC	2 cut(s)	326, 500
HgaI	GACGC	1 cut(s)	675
HhaI	GCGC	2 cut(s)	1359, 1515
Hin1II	CATG	8 cut(s)	187, 729, 909, 1094, 1202, 1214, 1292, 1459
Hin6I	GCGC	2 cut(s)	1357, 1513
HinP1I	GCGC	2 cut(s)	1357, 1513
HincII	GTYRAC	1 cut(s)	1649
HindII	GTYRAC	1 cut(s)	1649
HinfI	GANTC	7 cut(s)	287, 532, 571, 680, 722, 1487, 1556
HphI	GGTGA	7 cut(s)	307, 655, 681, 725, 956, 966, 1427
Hpy166II	GTNNAC	1 cut(s)	1649
Hpy188I	TCNGA	6 cut(s)	531, 537, 1017, 1121, 1147, 1544
Hpy188III	TCNNGA	9 cut(s)	73, 218, 362, 467, 521, 557, 719, 1304, 1662
Hpy8I	GTNNAC	1 cut(s)	1649
HpyAV	CCTTC	2 cut(s)	790, 1061
HpyCH4III	ACNGT	3 cut(s)	42, 356, 1471
HpyCH4IV	ACGT	2 cut(s)	379, 859
HpyCH4V	TGCA	4 cut(s)	703, 1198, 1387, 1566
HpyF3I	CTNAG	7 cut(s)	468, 534, 947, 1086, 1168, 1391, 1653
HpySE526I	ACGT	2 cut(s)	379, 859
Hsp92II	CATG	8 cut(s)	187, 729, 909, 1094, 1202, 1214, 1292, 1459
HspAI	GCGC	2 cut(s)	1357, 1513
Ksp22I	TGATCA	2 cut(s)	273, 715
LmnI	GCTCC	4 cut(s)	592, 1138, 1554, 1664
Lsp1109I	GCAGC	4 cut(s)	67, 70, 1341, 1399
LweI	GCATC	1 cut(s)	1185
MaeI	CTAG	5 cut(s)	218, 557, 599, 648, 1451
MaeII	ACGT	2 cut(s)	379, 859
MaeIII	GTNAC	4 cut(s)	643, 687, 855, 1474
MfeI	CAATTG	1 cut(s)	1491
MlsI	TGGCCA	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	526, 731
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	1200
MroXI	GAANNNNTTC	1 cut(s)	1422
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	7 cut(s)	117, 230, 263, 345, 611, 738, 1254
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	3 cut(s)	1172, 1390, 1589
MunI	CAATTG	1 cut(s)	1491
Mva1269I	GAATGC	3 cut(s)	516, 749, 1169
NlaIII	CATG	8 cut(s)	187, 729, 909, 1094, 1202, 1214, 1292, 1459
NlaIV	GGNNCC	2 cut(s)	371, 594
NmuCI	GTSAC	3 cut(s)	643, 687, 1474
NsbI	TGCGCA	1 cut(s)	1358
NsiI	ATGCAT	1 cut(s)	1200
NspV	TTCGAA	2 cut(s)	236, 1161
PaqCI	CACCTGC	1 cut(s)	975
PctI	GAATGC	3 cut(s)	516, 749, 1169
PdmI	GAANNNNTTC	1 cut(s)	1422
PfeI	GAWTC	5 cut(s)	287, 571, 680, 1487, 1556
PflMI	CCANNNNNTGG	1 cut(s)	1216
PkrI	GCNGC	4 cut(s)	57, 60, 1356, 1389
PleI	GAGTC	2 cut(s)	526, 730
PpsI	GAGTC	2 cut(s)	526, 730
Ppu21I	YACGTR	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	960
PspN4I	GGNNCC	2 cut(s)	371, 594
PspPI	GGNCC	2 cut(s)	448, 499
PvuII	CAGCTG	3 cut(s)	1172, 1390, 1589
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	7 cut(s)	117, 230, 263, 345, 611, 738, 1254
SatI	GCNGC	4 cut(s)	56, 59, 1355, 1388
Sau96I	GGNCC	2 cut(s)	448, 499
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	2 cut(s)	526, 731
SfaNI	GCATC	1 cut(s)	1185
SfuI	TTCGAA	2 cut(s)	236, 1161
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	1313
SmoI	CTYRAG	1 cut(s)	1313
SpeI	ACTAGT	2 cut(s)	598, 647
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	5 cut(s)	218, 557, 599, 648, 1451
StyI	CCWWGG	3 cut(s)	444, 495, 1608
TaaI	ACNGT	3 cut(s)	42, 356, 1471
TaiI	ACGT	2 cut(s)	382, 862
TaqI	TCGA	8 cut(s)	144, 236, 363, 1126, 1161, 1346, 1521, 1529
TaqII	GACCGA	1 cut(s)	465
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	5 cut(s)	287, 571, 680, 1487, 1556
Tru1I	TTAA	7 cut(s)	117, 230, 263, 345, 611, 738, 1254
Tru9I	TTAA	7 cut(s)	117, 230, 263, 345, 611, 738, 1254
TscAI	CASTG	4 cut(s)	205, 995, 1302, 1485
TseFI	GTSAC	3 cut(s)	643, 687, 1474
TseI	GCWGC	4 cut(s)	55, 58, 1354, 1387
Tsp45I	GTSAC	3 cut(s)	643, 687, 1474
TspDTI	ATGAA	9 cut(s)	65, 138, 200, 216, 987, 1047, 1277, 1290, 1415
TspGWI	ACGGA	2 cut(s)	642, 895
TspRI	CASTG	4 cut(s)	205, 995, 1302, 1485
Van91I	CCANNNNNTGG	1 cut(s)	1216
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	153, 176
XbaI	TCTAGA	2 cut(s)	217, 556
XmnI	GAANNNNTTC	1 cut(s)	1422
XspI	CTAG	5 cut(s)	218, 557, 599, 648, 1451
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.