Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Reverse (-)

21783161 .. 21784857

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1184500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGAGGATTTGATCGACTGTTGGACAACAGAATACCAACGGTGGAAGATGAAGCAGCAGCAGGTACAAAAATTCCATCTTCCGTTTTGTGCTTTTAAATTTCTCTTTCTGTCTCGTGAATTGTCCAAGTTGAGAGAAATTACATCAAGAATAGATGCAATTAACCGAGATGGACAACGCTACAAAAGTAACAGAACCATGATAGCAGCAAGTGATAAAAGTCATTCCAAAACATCGGGAACTGGGCCCGTTCAAGACAGGTTAGTTGTTAGTAGGGAGAAGGATAAAGAGAAGATCATAGAGCAGCTGACAACAGAGAAAAAAGCCGGTAGGGGAACCTTTTCATTTACTCCCATTGTTGGGATTGGAGGATTGGGGAAAACAACTCTTGCTCAACTTGTCTTTAATGATGAAAATGTTGATCGGTATTTCGATTTTAGAATTTGGGTTTTTGTGGGGAACGAATTTGACATGGAGAGGATTTTCCGTGAAATACTGGTCTCTCTAGTGCGTTCATTGAATGTGGAAAGAAGACAAGCAACGGAGTCTTTAAAAGATATGATCAAGAAAAAAGAATCTCAACCCGAAACCCCTGTTGATCCCACCCTCTTGGCCAAACTACAAACCTTGTTTAAAGATGCCAGTCCTCTCGATTTGAACCAACTACCTTCTCCCAGTGATCCCAACTCCTTGCCCCATCTAAAAGACCTTGATCTTCACTACTCCAACTCCTTGGACCGATTACAAACCCGTCCTGAGATTATTGATTATACCCCTCTCTCCTTGGCCCAACTAGAAACTCGCATTCTTGAACTTCTCACTCAGAAACGATTTTTACTTGTTCTAGACGACCTGTGGAATCATAAAGATGAGGAATTGGAGCCACTAGTAAAGGTCTTAAATCATGGGGCTTACGGAAGCAAGGTTCTGGTGACTAGTCGGCTGAAAGAAGTTTCAAATATCATGGATTCAGCGTCACCCTATTCTCTGCAATGTTTGGGTGATCATGAGTCATGGTGGTTGTTTAAAAAGTTGGCATTCAAAGAAGATAGTGATTTGATCGATAGCGAGTTTGAAAAATGTGGAAGGGAAATTGTAGGTATGTGTCAGGGTCTTCCTTTGGCTACAAAACAAATGGCAGGTCTGTTACGTGGGAAAGAATTGGGAGAATGGGAAAATGTTGCCAAAAGTCAAACATGGAAAGCACGAGTGGAAGATACTCAAATACTGCCTGCTCTTAGATTGAGTTATAATCACCTGCCCTCACCAGATCACAAGCAGTGCTTTTCATTGTGTTCCCTGTTTCCGAAATCGTATCTTTATGAAAAGGATGAGTTGGTCAAGTTATGGATGGCAGAAGGATTTATACAACCACCTACGCACGGAGTGGGAGAGAGGACAGAAGACATCGGAAGTCGATACTTCAAGGAGCTGTCAGACAGGTTCTTCTTCGAATGCTCAGCTGAAGACAACACAAAGTACAGGATGCATGATCTTATCCATGACTTGGCACAATCAGTTTCCAGTCCCTTTTTTTGCCAAGTGAAGGATATGAAAGATTTTGACGAAAAGTCTCGTCATGTATCACTGCTTCAAGAACAACTTCAGAAGCCTACAATAGAGATCGTCAACAAATCGAAGAAGCTGCGCACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

553

Amino Acids

63.91

Weight (kDa)

6.54

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	92 - 189	4.6e-16	NB-ARC domain
NB-ARC	PF00931	264 - 350	7.3e-18	NB-ARC domain
WHD_DRP	PF23559	434 - 504	2.2e-23	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1251
AarI	CACCTGC	1 cut(s)	1266
Acc16I	TGCGCA	1 cut(s)	1649
Acc36I	ACCTGC	3 cut(s)	52, 1130, 1266
AccB7I	CCANNNNNTGG	1 cut(s)	1507
AclWI	GGATC	2 cut(s)	593, 674
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	4 cut(s)	71, 98, 441, 464
AcuI	CTGAAG	2 cut(s)	1485, 1589
AdeI	CACNNNGTG	1 cut(s)	1387
AfaI	GTAC	2 cut(s)	66, 1481
AfiI	CCNNNNNNNGG	5 cut(s)	359, 360, 1382, 1507, 1546
AgsI	TTSAA	9 cut(s)	254, 520, 658, 812, 957, 1042, 1076, 1426, 1595
AhdI	GACNNNNNGTC	1 cut(s)	1570
AhlI	ACTAGT	2 cut(s)	886, 935
AloI	GAACNNNNNNTCC	2 cut(s)	909, 941
AluBI	AGCT	4 cut(s)	307, 1432, 1463, 1645
AluI	AGCT	4 cut(s)	307, 1432, 1463, 1645
Alw26I	GTCTC	3 cut(s)	117, 505, 1578
AlwI	GGATC	2 cut(s)	593, 674
AoxI	GGCC	3 cut(s)	245, 612, 786
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	5 cut(s)	55, 58, 206, 304, 1645
ApoI	RAATTY	4 cut(s)	71, 98, 441, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	1126, 1158
Asp700I	GAANNNNTTC	2 cut(s)	340, 1602
AspLEI	GCGC	1 cut(s)	1650
AspS9I	GGNCC	4 cut(s)	245, 246, 736, 787
AsuHPI	GGTGA	5 cut(s)	943, 969, 1013, 1247, 1257
AsuII	TTCGAA	1 cut(s)	1452
AvaII	GGWCC	1 cut(s)	736
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	4 cut(s)	1350, 1382, 1575, 1607
BauI	CACGAG	2 cut(s)	114, 1206
BbsI	GAAGAC	4 cut(s)	538, 1106, 1410, 1473
BbvI	GCAGC	5 cut(s)	67, 70, 218, 316, 1632
BccI	CCATC	4 cut(s)	84, 164, 705, 1345
BcgI	CGANNNNNNTGC	1 cut(s)	1627
BclI	TGATCA	2 cut(s)	561, 1003
BcoDI	GTCTC	3 cut(s)	117, 505, 1578
BcuI	ACTAGT	2 cut(s)	886, 935
BfaI	CTAG	5 cut(s)	506, 794, 845, 887, 936
BfuAI	ACCTGC	3 cut(s)	52, 1130, 1266
BisI	GCNGC	5 cut(s)	56, 59, 207, 305, 1646
BlpI	GCTNAGC	1 cut(s)	1459
BlsI	GCNGC	5 cut(s)	57, 60, 208, 306, 1647
Bme18I	GGWCC	1 cut(s)	736
BmeRI	GACNNNNNGTC	1 cut(s)	1570
BmgT120I	GGNCC	4 cut(s)	245, 246, 736, 787
BmiI	GGNNCC	3 cut(s)	247, 337, 882
BmrI	ACTGGG	2 cut(s)	252, 669
BmsI	GCATC	3 cut(s)	145, 628, 1476
BmuI	ACTGGG	2 cut(s)	252, 669
BpiI	GAAGAC	4 cut(s)	538, 1106, 1410, 1473
Bpu1102I	GCTNAGC	1 cut(s)	1459
Bpu14I	TTCGAA	1 cut(s)	1452
Bsa29I	ATCGAT	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	1151
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	732, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	5 cut(s)	359, 360, 1382, 1507, 1546
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	5 cut(s)	247, 501, 642, 675, 1524
Bse3DI	GCAATG	1 cut(s)	998
BseCI	ATCGAT	1 cut(s)	1062
BseDI	CCNNGG	2 cut(s)	732, 783
BseGI	GGATG	3 cut(s)	1336, 1356, 1491
BseLI	CCNNNNNNNGG	5 cut(s)	359, 360, 1382, 1507, 1546
BseMI	GCAATG	1 cut(s)	998
BseMII	CTCAG	3 cut(s)	747, 836, 1473
BseNI	ACTGG	5 cut(s)	247, 501, 642, 675, 1524
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	5 cut(s)	67, 70, 218, 316, 1632
BshFI	GGCC	3 cut(s)	247, 614, 788
BshVI	ATCGAT	1 cut(s)	1062
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	1512
BslI	CCNNNNNNNGG	5 cut(s)	359, 360, 1382, 1507, 1546
BsmAI	GTCTC	3 cut(s)	117, 505, 1578
BsmFI	GGGAC	1 cut(s)	1512
BsmI	GAATGC	3 cut(s)	804, 1037, 1460
BsnI	GGCC	3 cut(s)	247, 614, 788
Bso31I	GGTCTC	1 cut(s)	505
Bsp119I	TTCGAA	1 cut(s)	1452
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1720I	GCTNAGC	1 cut(s)	1459
BspANI	GGCC	3 cut(s)	247, 614, 788
BspCNI	CTCAG	3 cut(s)	748, 835, 1472
BspDI	ATCGAT	1 cut(s)	1062
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	3 cut(s)	247, 337, 882
BspMI	ACCTGC	3 cut(s)	52, 1130, 1266
BspPI	GGATC	2 cut(s)	593, 674
BspT104I	TTCGAA	1 cut(s)	1452
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	998
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	5 cut(s)	247, 501, 642, 675, 1524
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	732, 783
BssSI	CACGAG	2 cut(s)	114, 1206
BssT1I	CCWWGG	2 cut(s)	732, 783
Bst2BI	CACGAG	2 cut(s)	114, 1206
Bst4CI	ACNGT	2 cut(s)	20, 42
BstBAI	YACGTR	1 cut(s)	1151
BstBI	TTCGAA	1 cut(s)	1452
BstC8I	GCNNGC	1 cut(s)	1233
BstDEI	CTNAG	4 cut(s)	756, 822, 1238, 1459
BstF5I	GGATG	3 cut(s)	1336, 1356, 1491
BstHHI	GCGC	1 cut(s)	1650
BstMAI	GTCTC	3 cut(s)	117, 505, 1578
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	5 cut(s)	67, 70, 218, 316, 1632
BstV2I	GAAGAC	4 cut(s)	538, 1106, 1410, 1473
BstXI	CCANNNNNNTGG	2 cut(s)	610, 733
Bsu15I	ATCGAT	1 cut(s)	1062
BsuRI	GGCC	3 cut(s)	247, 614, 788
BsuTUI	ATCGAT	1 cut(s)	1062
BtsCI	GGATG	3 cut(s)	1336, 1356, 1491
BtsI	GCAGTG	2 cut(s)	1286, 1586
BtsIMutI	CAGTG	3 cut(s)	682, 1286, 1586
BveI	ACCTGC	3 cut(s)	52, 1130, 1266
Cac8I	GCNNGC	1 cut(s)	1233
CciI	TCATGA	1 cut(s)	1006
CfoI	GCGC	1 cut(s)	1650
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	4 cut(s)	245, 246, 736, 787
ClaI	ATCGAT	1 cut(s)	1062
CseI	GACGC	1 cut(s)	963
Csp6I	GTAC	2 cut(s)	65, 1480
CviQI	GTAC	2 cut(s)	65, 1480
DdeI	CTNAG	4 cut(s)	756, 822, 1238, 1459
DraI	TTTAAA	4 cut(s)	97, 552, 634, 1027
DraIII	CACNNNGTG	1 cut(s)	1387
DriI	GACNNNNNGTC	1 cut(s)	1570
EaeI	YGGCCR	1 cut(s)	612
Eam1105I	GACNNNNNGTC	1 cut(s)	1570
Eco130I	CCWWGG	2 cut(s)	732, 783
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	736
Eco57I	CTGAAG	2 cut(s)	1485, 1589
EcoT14I	CCWWGG	2 cut(s)	732, 783
EcoT22I	ATGCAT	1 cut(s)	1491
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	732, 783
FalI	AAGNNNNNCTT	4 cut(s)	1268, 1300, 1587, 1619
FaqI	GGGAC	1 cut(s)	1512
FbaI	TGATCA	2 cut(s)	561, 1003
Fnu4HI	GCNGC	5 cut(s)	56, 59, 207, 305, 1646
FokI	GGATG	3 cut(s)	1343, 1363, 1498
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	56, 59, 207, 305, 1646
FspBI	CTAG	5 cut(s)	506, 794, 845, 887, 936
FspI	TGCGCA	1 cut(s)	1649
GlaI	GCGC	1 cut(s)	1649
GluI	GCNGC	5 cut(s)	56, 59, 207, 305, 1646
HaeIII	GGCC	3 cut(s)	247, 614, 788
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	963
HhaI	GCGC	1 cut(s)	1650
Hin6I	GCGC	1 cut(s)	1648
HinP1I	GCGC	1 cut(s)	1648
HincII	GTYRAC	1 cut(s)	1630
HindII	GTYRAC	1 cut(s)	1630
HinfI	GANTC	5 cut(s)	545, 575, 859, 968, 1010
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	5 cut(s)	943, 969, 1013, 1247, 1257
Hpy166II	GTNNAC	1 cut(s)	1630
Hpy188I	TCNGA	5 cut(s)	825, 1308, 1412, 1438, 1608
Hpy8I	GTNNAC	1 cut(s)	1630
HpyAV	CCTTC	5 cut(s)	274, 678, 1080, 1352, 1540
HpyCH4III	ACNGT	2 cut(s)	20, 42
HpyCH4IV	ACGT	1 cut(s)	1150
HpyCH4V	TGCA	3 cut(s)	158, 991, 1489
HpyF3I	CTNAG	4 cut(s)	756, 822, 1238, 1459
HpySE526I	ACGT	1 cut(s)	1150
HspAI	GCGC	1 cut(s)	1648
Ksp22I	TGATCA	2 cut(s)	561, 1003
LmnI	GCTCC	2 cut(s)	880, 1429
Lsp1109I	GCAGC	5 cut(s)	67, 70, 218, 316, 1632
LweI	GCATC	3 cut(s)	145, 628, 1476
MaeI	CTAG	5 cut(s)	506, 794, 845, 887, 936
MaeII	ACGT	1 cut(s)	1150
MaeIII	GTNAC	4 cut(s)	188, 931, 975, 1146
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	614
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	554, 1019
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	8 cut(s)	362, 471, 617, 657, 786, 865, 1273, 1389
Mox20I	TGGCCA	1 cut(s)	614
Mph1103I	ATGCAT	1 cut(s)	1491
MroXI	GAANNNNTTC	2 cut(s)	340, 1602
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	7 cut(s)	96, 162, 405, 551, 633, 899, 1026
MslI	CAYNNNNRTG	1 cut(s)	867
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	2 cut(s)	307, 1463
MspI	CCGG	1 cut(s)	327
Mva1269I	GAATGC	3 cut(s)	804, 1037, 1460
NlaIV	GGNNCC	3 cut(s)	247, 337, 882
NmuCI	GTSAC	2 cut(s)	931, 975
NsbI	TGCGCA	1 cut(s)	1649
NsiI	ATGCAT	1 cut(s)	1491
NspV	TTCGAA	1 cut(s)	1452
PagI	TCATGA	1 cut(s)	1006
PaqCI	CACCTGC	1 cut(s)	1266
PctI	GAATGC	3 cut(s)	804, 1037, 1460
PdmI	GAANNNNTTC	2 cut(s)	340, 1602
PfeI	GAWTC	3 cut(s)	575, 859, 968
PflMI	CCANNNNNTGG	1 cut(s)	1507
PkrI	GCNGC	5 cut(s)	57, 60, 208, 306, 1647
PleI	GAGTC	2 cut(s)	553, 1018
PpsI	GAGTC	2 cut(s)	553, 1018
Ppu21I	YACGTR	1 cut(s)	1151
PsiI	TTATAA	1 cut(s)	1251
PspN4I	GGNNCC	3 cut(s)	247, 337, 882
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	4 cut(s)	245, 246, 736, 787
PvuII	CAGCTG	2 cut(s)	307, 1463
RsaI	GTAC	2 cut(s)	66, 1481
RsaNI	GTAC	2 cut(s)	65, 1480
RseI	CAYNNNNRTG	1 cut(s)	867
SaqAI	TTAA	7 cut(s)	96, 162, 405, 551, 633, 899, 1026
SatI	GCNGC	5 cut(s)	56, 59, 207, 305, 1646
Sau96I	GGNCC	4 cut(s)	245, 246, 736, 787
SchI	GAGTC	2 cut(s)	554, 1019
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	145, 628, 1476
SfuI	TTCGAA	1 cut(s)	1452
SinI	GGWCC	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	867
SpeI	ACTAGT	2 cut(s)	886, 935
SspMI	CTAG	5 cut(s)	506, 794, 845, 887, 936
StyI	CCWWGG	2 cut(s)	732, 783
TaaI	ACNGT	2 cut(s)	20, 42
TaiI	ACGT	1 cut(s)	1153
TaqI	TCGA	7 cut(s)	15, 432, 651, 1062, 1417, 1452, 1637
TaqII	GACCGA	1 cut(s)	753
TatI	WGTACW	1 cut(s)	1479
TfiI	GAWTC	3 cut(s)	575, 859, 968
Tru1I	TTAA	7 cut(s)	96, 162, 405, 551, 633, 899, 1026
Tru9I	TTAA	7 cut(s)	96, 162, 405, 551, 633, 899, 1026
TscAI	CASTG	3 cut(s)	682, 1286, 1593
TseFI	GTSAC	2 cut(s)	931, 975
TseI	GCWGC	5 cut(s)	55, 58, 206, 304, 1645
Tsp45I	GTSAC	2 cut(s)	931, 975
TspDTI	ATGAA	7 cut(s)	65, 333, 426, 504, 1278, 1338, 1568
TspGWI	ACGGA	5 cut(s)	72, 476, 557, 930, 1398
TspRI	CASTG	3 cut(s)	682, 1286, 1593
Van91I	CCANNNNNTGG	1 cut(s)	1507
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	4 cut(s)	71, 98, 441, 464
XbaI	TCTAGA	1 cut(s)	844
XmnI	GAANNNNTTC	2 cut(s)	340, 1602
XspI	CTAG	5 cut(s)	506, 794, 845, 887, 936
Zsp2I	ATGCAT	1 cut(s)	1491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.