Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150798 .. 5151836

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTGGATGGGAAATTGTACGTATGTGTCAGGGTCTTCCTTTGGCTATAAAACAAATGGCAGGTCTGTTACGTGGGAAAAACTTGAAAGAATGGGAAAATGTTTCCAAAAGTCAAACATGGAAAGCAAAGCAGAAGATGATACTGGAGTTCGGCCTGCTCTTAGACTGAGTTATAATCACCTGCCCTCACCAGATCACAAGCAGTGCTTTTCGTTGTGTTCCCTGTTTCCGAAATCATATCTCTATGAGAAGGATGAGTTGGTCAAGTTATGGATGGCAGAAGGATTTATGCAACCACCTGAGAACGGAGTGTTCTTCTTCGAATGCTCAACTGAAGACAAGACAAAGTATAGGATGCATGATCTTATCCATGATCTGGCACTTTCAGTTTCCGGTCCCTTTTGTTGCCAAGTGAATGATATGAAAGATTTTGACGAAAAATCTCGTCATGTACCACTGCTTTCAGAACAAGTTGAGAAGCCTGCAATAGAGATCGCCAACAAATCGAAGAAGCTGCGCACACTTTTACTTCCTGTTCAACACTTGCAACTGAGAGCCTTTGGGAAAGGACAAGGTGAGATAATTCACTCACTTACATATATGCGTGTGCTAGACCTGAGTTCAAGCACAGTTGTCACACTGTCAGATTCAATTGGGAGGTTGAAGCCCTTGCGCTACCTCGATTTATCGGCAACTGAAATCAGAAAGCTCCCTGACTCGGTATGCAACCTCTTCAATTTGGAGACGTTGAAACTTTTGCGTTGTCCTTGGATTTTCAATTTGCCCAAGAACTTCAAAACTCTTGTCAACCTGAGACATCTGGAGCTAGATGAAATTTTCTGGTACATGGCCTTGATGTTGCCACGAAGCATGGGGTGTCTAACCAGTCTGCACAACTTGCACAAATTTCCGTTTGTTTTTTTCCAATCCTTTTCTTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

315

Amino Acids

36.3

Weight (kDa)

8.52

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AarI	CACCTGC	1 cut(s)	189
Acc16I	TGCGCA	1 cut(s)	518
Acc36I	ACCTGC	2 cut(s)	51, 189
AccB7I	CCANNNNNTGG	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	834, 905
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	3 cut(s)	19, 453, 845
AfiI	CCNNNNNNNGG	3 cut(s)	305, 376, 718
AgsI	TTSAA	9 cut(s)	86, 539, 624, 651, 664, 736, 751, 778, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	3 cut(s)	514, 709, 826
AluI	AGCT	3 cut(s)	514, 709, 826
Alw26I	GTCTC	2 cut(s)	737, 808
AoxI	GGCC	2 cut(s)	152, 849
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	834, 905
ArsI	GACNNNNNNTTYG	4 cut(s)	47, 79, 789, 821
AspLEI	GCGC	2 cut(s)	519, 675
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	3 cut(s)	170, 180, 587
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BbsI	GAAGAC	2 cut(s)	27, 342
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BcoDI	GTCTC	2 cut(s)	737, 808
BfaI	CTAG	2 cut(s)	611, 827
BfuAI	ACCTGC	2 cut(s)	51, 189
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	2 cut(s)	27, 342
BpmI	CTGGAG	2 cut(s)	165, 842
Bpu14I	TTCGAA	1 cut(s)	321
BsaAI	YACGTR	2 cut(s)	21, 72
BsaJI	CCNNGG	1 cut(s)	767
BsaWI	WCCGGW	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 376, 718
Bse1I	ACTGG	2 cut(s)	148, 885
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	4 cut(s)	12, 259, 279, 360
BseLI	CCNNNNNNNGG	3 cut(s)	305, 376, 718
BseMII	CTCAG	5 cut(s)	158, 291, 542, 608, 803
BseNI	ACTGG	2 cut(s)	148, 885
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	875
BshFI	GGCC	2 cut(s)	154, 851
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	305, 376, 718
BsmAI	GTCTC	2 cut(s)	737, 808
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	154, 851
Bsp119I	TTCGAA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	193, 361, 373, 492
BspANI	GGCC	2 cut(s)	154, 851
BspCNI	CTCAG	5 cut(s)	159, 292, 543, 609, 804
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	2 cut(s)	51, 189
BspT104I	TTCGAA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	148, 885
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	4 cut(s)	193, 361, 373, 492
BssT1I	CCWWGG	1 cut(s)	767
Bst4CI	ACNGT	2 cut(s)	631, 642
Bst6I	CTCTTC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstBAI	YACGTR	2 cut(s)	21, 72
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	156, 483
BstDEI	CTNAG	6 cut(s)	161, 167, 300, 551, 617, 812
BstF5I	GGATG	4 cut(s)	12, 259, 279, 360
BstHHI	GCGC	2 cut(s)	519, 675
BstKTI	GATC	4 cut(s)	196, 364, 376, 495
BstMAI	GTCTC	2 cut(s)	737, 808
BstMBI	GATC	4 cut(s)	193, 361, 373, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	898
BstSNI	TACGTA	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	2 cut(s)	27, 342
BsuRI	GGCC	2 cut(s)	154, 851
BtsCI	GGATG	4 cut(s)	12, 259, 279, 360
BtsI	GCAGTG	2 cut(s)	209, 455
BtsIMutI	CAGTG	3 cut(s)	209, 455, 638
BveI	ACCTGC	2 cut(s)	51, 189
Cac8I	GCNNGC	2 cut(s)	156, 483
CfoI	GCGC	2 cut(s)	519, 675
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	18, 452, 844
CviAII	CATG	6 cut(s)	118, 359, 371, 449, 847, 871
CviJI	RGCY	9 cut(s)	45, 154, 481, 514, 557, 667, 709, 826, 851
CviKI_1	RGCY	9 cut(s)	45, 154, 481, 514, 557, 667, 709, 826, 851
CviQI	GTAC	3 cut(s)	18, 452, 844
DdeI	CTNAG	6 cut(s)	161, 167, 300, 551, 617, 812
DpnI	GATC	4 cut(s)	195, 363, 375, 494
DpnII	GATC	4 cut(s)	193, 361, 373, 492
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco105I	TACGTA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	767
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	767
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	6 cut(s)	121, 362, 374, 452, 850, 874
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	6 cut(s)	117, 358, 370, 448, 846, 870
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	4 cut(s)	19, 266, 286, 367
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	611, 827
FspI	TGCGCA	1 cut(s)	518
GlaI	GCGC	2 cut(s)	518, 674
GluI	GCNGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	165, 842
HaeIII	GGCC	2 cut(s)	154, 851
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	2 cut(s)	519, 675
Hin1II	CATG	6 cut(s)	121, 362, 374, 452, 850, 874
Hin6I	GCGC	2 cut(s)	517, 673
HinP1I	GCGC	2 cut(s)	517, 673
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	2 cut(s)	647, 716
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	170, 180, 587
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	4 cut(s)	231, 466, 646, 704
Hpy188III	TCNNGA	1 cut(s)	821
Hpy8I	GTNNAC	1 cut(s)	808
HpyAV	CCTTC	2 cut(s)	244, 275
HpyCH4III	ACNGT	2 cut(s)	631, 642
HpyCH4IV	ACGT	3 cut(s)	20, 71, 746
HpyCH4V	TGCA	7 cut(s)	292, 358, 485, 547, 726, 892, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	898
HpyF3I	CTNAG	6 cut(s)	161, 167, 300, 551, 617, 812
HpySE526I	ACGT	3 cut(s)	20, 71, 746
Hsp92II	CATG	6 cut(s)	121, 362, 374, 452, 850, 874
HspAI	GCGC	2 cut(s)	517, 673
Kzo9I	GATC	4 cut(s)	193, 361, 373, 492
LmnI	GCTCC	2 cut(s)	714, 823
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	611, 827
MaeII	ACGT	3 cut(s)	20, 71, 746
MaeIII	GTNAC	2 cut(s)	67, 634
MalI	GATC	4 cut(s)	195, 363, 375, 494
MboI	GATC	4 cut(s)	193, 361, 373, 492
MboII	GAAGA	7 cut(s)	27, 146, 307, 310, 347, 520, 724
MfeI	CAATTG	1 cut(s)	651
MluCI	AATT	7 cut(s)	13, 582, 651, 736, 778, 834, 905
MlyI	GAGTC	1 cut(s)	710
MnlI	CCTC	4 cut(s)	196, 651, 689, 740
Mph1103I	ATGCAT	1 cut(s)	360
MspI	CCGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	898
NdeII	GATC	4 cut(s)	193, 361, 373, 492
NlaIII	CATG	6 cut(s)	121, 362, 374, 452, 850, 874
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	634
NsbI	TGCGCA	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	647
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	516
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
Ppu21I	YACGTR	2 cut(s)	21, 72
PsiI	TTATAA	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	395
RsaI	GTAC	3 cut(s)	19, 453, 845
RsaNI	GTAC	3 cut(s)	18, 452, 844
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	4 cut(s)	193, 361, 373, 492
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	710
SfaNI	GCATC	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	1 cut(s)	395
SnaBI	TACGTA	1 cut(s)	21
Sse9I	AATT	7 cut(s)	13, 582, 651, 736, 778, 834, 905
SspMI	CTAG	2 cut(s)	611, 827
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	2 cut(s)	631, 642
TaiI	ACGT	3 cut(s)	23, 74, 749
TaqI	TCGA	3 cut(s)	321, 506, 681
TasI	AATT	7 cut(s)	13, 582, 651, 736, 778, 834, 905
TfiI	GAWTC	1 cut(s)	647
TscAI	CASTG	3 cut(s)	209, 462, 645
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	437, 846
TspGWI	ACGGA	2 cut(s)	321, 900
TspRI	CASTG	3 cut(s)	209, 462, 645
Van91I	CCANNNNNTGG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	834, 905
XspI	CTAG	2 cut(s)	611, 827
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.