Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005191

Physical Location & Seq

Genomic Coordinates Reverse (-)

5149497 .. 5150484

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGACAGCTCAGGAACTTGGTTAGTATTTGTTTGAATCATTGCAACAGATCCAAAGTCCTTGATCTTGGGGAGCCATCGAAACTTGAGGAATTCTGTCTCAAAAATATGCTAGAGTTGGAGGATTGGAAAGGAACGTTTGTATCCCTCAAAAAGCTAAAGATAGCTAACTGCCCGAAGTTGAAAAGGTGTTCAAATGATGCGACAGAAAGCAATGAATCATGGGAAATTCTGAAGATCAAAAGGTGTGAATCATTGGAAAGCCTTGAATTATACTACAACCAGCACCCGAAGAATATCACGCTTGTTGACAATCCTGTTCTGGAGCACTGGATACGGAAGGCAAATTGGAGAAATTTTGTTTTCAGTCGCATAATATTGAACGAACTCAAAATTATCAATTGCCCCAAGCTGCATGAGTTGCCAAAACCCTTGGAAAAATTGGAAATAAGTGGGTGCAATCCAATCGAAATGCAAGTACGCAAGTTCTCCTCAATCCAGGAACTTCGACATTTGGCATTGGTTGCATGTTCTGCAGATGCTAAAACATTAGTGGGTGTGCCGCCTTGTATAGATGTCTCTAGCCTATGTTTCTTGGCGATTTCCAATATCTCAAACCTCGTACGTCTTCCAGATTGGGGTCTTCCCGAACTCAGAGCACTCTACTTTCGTGACTGCAAAGCTCTTGAGTACTTATCCAACCAAGAAAACAAGTTGTTCCACAGATTCATCTCCCTCACAACACTCTCCATCCACAATTGTCCTCAGCTTGTAACGTTGCCAGTTGAAGGCCTCCCAAAATCTCTTGAGTATTTGAGTATTGGCTCATGTGCAAGGGTGGGCTACCAACCTCCCTCTTGCATCTCTCTATCCAACGCTGCACCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

297

Amino Acids

33.7

Weight (kDa)

8.57

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120 FvH4_6g30120
malus_domestica	MD11G1079400.v1.1 MD17G1184400.v1.1 MD17G1184500.v1.1
prunus_persica	Prupe.3G082400_v2.0.a1
pyrus_communis	pycom11g06670 pycom11g06680 pycom17g19400 pycom17g19410
rosa_chinensis	RchiOBHm_Chr2g0136171 RchiOBHm_Chr2g0136341
rosa_laevigata	RLG00000019511 RLG00000019518
rosa_multiflora	Rmu_sc0002070.1_g000022 Rmu_sc0002070.1_g000023 Rmu_sc0002518.1_g000002 Rmu_sc0002986.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108390
rosa_rugosa	Rorug02G0328600.1 Rorug02G0328700 Rorug02G0329000
rosa_samantha	Rh2AG380600 Rh2BG387000 Rh2CG366100 Rh2DG403600
rosa_wichuraiana	Rw2G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	563
AclI	AACGTT	2 cut(s)	137, 776
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	92, 228, 355
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	480, 624, 692
AfiI	CCNNNNNNNGG	2 cut(s)	638, 788
AgsI	TTSAA	6 cut(s)	37, 184, 195, 269, 382, 788
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	10, 157, 167, 412, 683, 769
AluI	AGCT	6 cut(s)	10, 157, 167, 412, 683, 769
Alw21I	GWGCWC	2 cut(s)	330, 661
Alw26I	GTCTC	2 cut(s)	104, 583
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	2 cut(s)	412, 878
ApoI	RAATTY	3 cut(s)	92, 228, 355
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BbsI	GAAGAC	2 cut(s)	620, 635
Bbv12I	GWGCWC	2 cut(s)	330, 661
BbvCI	CCTCAGC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	399, 865
BccI	CCATC	2 cut(s)	85, 758
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	1 cut(s)	500
BciVI	GTATCC	2 cut(s)	154, 327
BcoDI	GTCTC	2 cut(s)	104, 583
BfaI	CTAG	2 cut(s)	113, 582
BfmI	CTRYAG	1 cut(s)	534
BfuI	GTATCC	2 cut(s)	154, 327
BisI	GCNGC	3 cut(s)	413, 563, 879
BlsI	GCNGC	3 cut(s)	414, 564, 880
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	3 cut(s)	190, 529, 870
BpiI	GAAGAC	2 cut(s)	620, 635
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	2 cut(s)	11, 765
BpuEI	CTTGAG	3 cut(s)	107, 707, 827
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	2 cut(s)	638, 788
Bse1I	ACTGG	2 cut(s)	335, 782
Bse3DI	GCAATG	2 cut(s)	40, 220
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	750
BseLI	CCNNNNNNNGG	2 cut(s)	638, 788
BseMI	GCAATG	2 cut(s)	40, 220
BseMII	CTCAG	3 cut(s)	25, 667, 779
BseNI	ACTGG	2 cut(s)	335, 782
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	399, 865
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	792
BsiHKAI	GWGCWC	2 cut(s)	330, 661
BsiWI	CGTACG	1 cut(s)	622
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	638, 788
BsmAI	GTCTC	2 cut(s)	104, 583
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	792
Bsp1286I	GDGCHC	2 cut(s)	330, 661
Bsp143I	GATC	3 cut(s)	50, 64, 237
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	3 cut(s)	24, 666, 778
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	40, 220
BsrI	ACTGG	2 cut(s)	335, 782
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	50, 64, 237
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	500
BstAPI	GCANNNNNTGC	3 cut(s)	421, 524, 533
BstDEI	CTNAG	3 cut(s)	11, 653, 765
BstF5I	GGATG	1 cut(s)	750
BstKTI	GATC	3 cut(s)	53, 67, 240
BstMAI	GTCTC	2 cut(s)	104, 583
BstMBI	GATC	3 cut(s)	50, 64, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 524, 533
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	399, 865
BstV2I	GAAGAC	2 cut(s)	620, 635
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	2 cut(s)	154, 327
BsuRI	GGCC	1 cut(s)	792
BtsCI	GGATG	1 cut(s)	750
BtsIMutI	CAGTG	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	479, 623, 691
CviAII	CATG	4 cut(s)	222, 416, 528, 828
CviQI	GTAC	3 cut(s)	479, 623, 691
DdeI	CTNAG	3 cut(s)	11, 653, 765
DpnI	GATC	3 cut(s)	52, 66, 239
DpnII	GATC	3 cut(s)	50, 64, 237
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	225, 419, 531, 831
FaiI	YATR	9 cut(s)	110, 223, 274, 374, 417, 529, 572, 589, 829
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	221, 415, 527, 827
Fnu4HI	GCNGC	3 cut(s)	413, 563, 879
FokI	GGATG	1 cut(s)	737
Fsp4HI	GCNGC	3 cut(s)	413, 563, 879
FspBI	CTAG	2 cut(s)	113, 582
GluI	GCNGC	3 cut(s)	413, 563, 879
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	792
Hin1II	CATG	4 cut(s)	225, 419, 531, 831
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	37, 218, 251, 726
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	234, 656
Hpy188III	TCNNGA	7 cut(s)	13, 323, 632, 647, 671, 686, 806
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	334, 782
HpyCH4IV	ACGT	3 cut(s)	137, 625, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 524, 533
HpyF3I	CTNAG	3 cut(s)	11, 653, 765
HpySE526I	ACGT	3 cut(s)	137, 625, 776
Hsp92II	CATG	4 cut(s)	225, 419, 531, 831
Kzo9I	GATC	3 cut(s)	50, 64, 237
LmnI	GCTCC	2 cut(s)	73, 325
LpnPI	CCDG	8 cut(s)	296, 308, 316, 330, 485, 512, 645, 795
Lsp1109I	GCAGC	2 cut(s)	399, 865
LweI	GCATC	3 cut(s)	190, 529, 870
MaeI	CTAG	2 cut(s)	113, 582
MaeII	ACGT	3 cut(s)	137, 625, 776
MaeIII	GTNAC	2 cut(s)	671, 772
MalI	GATC	3 cut(s)	52, 66, 239
MboI	GATC	3 cut(s)	50, 64, 237
MboII	GAAGA	4 cut(s)	247, 304, 620, 635
MfeI	CAATTG	2 cut(s)	400, 757
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	330, 661
MluCI	AATT	9 cut(s)	92, 228, 269, 346, 355, 393, 400, 440, 757
MmeI	TCCRAC	2 cut(s)	99, 723
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	2 cut(s)	400, 757
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	421, 524, 533
NdeII	GATC	3 cut(s)	50, 64, 237
NlaIII	CATG	4 cut(s)	225, 419, 531, 831
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	671
NspI	RCATGY	1 cut(s)	531
PceI	AGGCCT	1 cut(s)	792
PfeI	GAWTC	4 cut(s)	37, 218, 251, 726
Pfl23II	CGTACG	1 cut(s)	622
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	414, 564, 880
Psp1406I	AACGTT	2 cut(s)	137, 776
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspLI	CGTACG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	3 cut(s)	480, 624, 692
RsaNI	GTAC	3 cut(s)	479, 623, 691
SatI	GCNGC	3 cut(s)	413, 563, 879
Sau3AI	GATC	3 cut(s)	50, 64, 237
ScaI	AGTACT	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	330, 661
SfaNI	GCATC	3 cut(s)	190, 529, 870
SfcI	CTRYAG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	86, 686, 806
SmoI	CTYRAG	3 cut(s)	86, 686, 806
Sse9I	AATT	9 cut(s)	92, 228, 269, 346, 355, 393, 400, 440, 757
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	1 cut(s)	563
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	113, 582
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	3 cut(s)	140, 628, 779
TaqI	TCGA	3 cut(s)	80, 468, 508
TasI	AATT	9 cut(s)	92, 228, 269, 346, 355, 393, 400, 440, 757
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	4 cut(s)	37, 218, 251, 726
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	412, 878
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	2 cut(s)	231, 718
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	335
XapI	RAATTY	3 cut(s)	92, 228, 355
XceI	RCATGY	1 cut(s)	531
XspI	CTAG	2 cut(s)	113, 582
ZrmI	AGTACT	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.