RchiOBHm_Chr2g0136181

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008507
Physical Location & Seq
Reverse (-)
53479967 .. 53482932
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50700

Sequence Viewer

Length: 1323 bp
ATGGCGGTGATTTCAGTGAAGCCCATGTTCACCGTAGTGGTGGTCACTCTCTCTCTCATCCTTGCCGTCCTCGTCTTCTCCCCCACTTCGCCTTTCTACCAATCCCCCCTCTCTCTTGCTTCACCCCAAAGAAAATTGGATATATGGAGTGTTGGGAGGATCGTAGAGTGGAGACCTTGCAAGTGGTGGCTACAAGGACATCTCACCGCTCTGCCATCAAAGAGTAATGGATTCATTCGAGTGGATTGCTATGGTGGCCTTAATCAGATGAGAAGAGATTTGTGCGATGGGGTCGGTATTGCCCGTCTTTTAAATGCAACCCTTGTTCTGCCAAAGTTTGAGGTGGCTGCTTATTGGAATGAATCAAGTGGTTTTGCAGACGTCTTTGATGTTGACTACTTCATTCAACAGTTGAATGGTTTTATCAGAGTTGTCAAAGAGTTACCACACGAGTTTGCATCAAAAGAACCCTTCCGTGTAGATTGCAGCAAACGTAAAGGCCAATTTGATTATATTGAAAATGTTCTTCCGTCTTTATTAGAACATCATTATATATCCATCACACCAGCAATGAGCCAAAGAAGGGATAGGTATCCTCAGTTTGCAAAAGCTGCCCTTTGTCAAGCATGTTACAGTGCATTACGCCTCACGAAAGCCCTGGAGAAGAAGGCTTCCGAGCTTCTTGAAGCCATACCTAAACCTTTTCTGTCACTTCACCTTCGTTTTGAGCCTGATATGGTAGCCTACAGTCAATGTGAATACCCATACCTTTCTCCTGCCTCCATTGAAGCTGTTAAGGCAGCACAAGGTGATAGAAAACCTTGGACTGGGGAGCTTGCCCAAATTTGGAGGAAACGAGGGAAATGTCCTCTTACACCTAATGAGACAGCATTCATACTCCAAGTGCTTTCCATCCCAACCAACACAAACATTTATCTTGCAGCTGGGGATGGCCTGATGGAAATTGAAGGATTAACATCTGTTTACACAAATGTAGTTACCAAGTCTAGCCTACTTAGCGGGGAGGATTTCAAAAGCATGCATGGGAACACCAAAGCTGCTTTGGATTATTATGTGTCTATTAACAGTGATTCATATATAGCAACATATTTTGGAAATATGGATAAGATGGTTGCAGCAATGCGAGCTTATAACGGCTTGTACAAGACTCTTTTCTTAAGCAGAAGAGCTTTTGCAGAGTACACGTCTCAAGGTTTGATAGGGAAGGAATTGATGCAAGCCCTATGGAAGACTCATAGAGATGATTTTGTCATGGGAAGAGGATCTGCTTTGCCTGATTGCTTCTGTGAGTTCAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

440

Amino Acids

49.61

Weight (kDa)

8.75

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 78 - 385 3.7e-63 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AatII GACGTC 1 cut(s) 384
AccBSI CCGCTC 1 cut(s) 209
AciI CCGC 3 cut(s) 5, 207, 1020
AclWI GGATC 2 cut(s) 167, 1291
AcsI RAATTY 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 2 cut(s) 1163, 1202
AfiI CCNNNNNNNGG 3 cut(s) 583, 827, 846
AflII CTTAAG 1 cut(s) 1177
AflIII ACRYGT 1 cut(s) 1203
AgsI TTSAA 8 cut(s) 407, 415, 518, 686, 788, 968, 1033, 1315
AjiI CACGTC 1 cut(s) 1206
AjnI CCWGG 1 cut(s) 657
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 8 cut(s) 611, 679, 791, 835, 944, 1058, 1148, 1190
AluI AGCT 8 cut(s) 611, 679, 791, 835, 944, 1058, 1148, 1190
Alw26I GTCTC 3 cut(s) 166, 878, 1212
AlwI GGATC 2 cut(s) 167, 1291
AoxI GGCC 3 cut(s) 256, 499, 952
ApeKI GCWGC 7 cut(s) 347, 486, 611, 800, 941, 1058, 1136
ApoI RAATTY 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 522
AsuHPI GGTGA 6 cut(s) 19, 22, 114, 196, 707, 821
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 2 cut(s) 67, 1256
BbvI GCAGC 7 cut(s) 334, 498, 598, 812, 953, 1045, 1148
BccI CCATC 7 cut(s) 223, 281, 566, 920, 944, 952, 1123
BceAI ACGGC 2 cut(s) 50, 1171
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 166, 878, 1212
BfaI CTAG 1 cut(s) 1008
BfmI CTRYAG 1 cut(s) 745
BfrI CTTAAG 1 cut(s) 1177
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 7 cut(s) 348, 487, 612, 801, 942, 1059, 1137
BlsI GCNGC 7 cut(s) 349, 488, 613, 802, 943, 1060, 1138
Bme1390I CCNGG 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 1206
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 2 cut(s) 467, 1224
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 2 cut(s) 67, 1256
BpmI CTGGAG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 1194
BsaBI GATNNNNATC 2 cut(s) 591, 976
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 657, 821
Bsc4I CCNNNNNNNGG 3 cut(s) 583, 827, 846
Bse1I ACTGG 1 cut(s) 832
Bse3DI GCAATG 2 cut(s) 576, 1146
Bse8I GATNNNNATC 2 cut(s) 591, 976
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 657, 821
BseGI GGATG 3 cut(s) 57, 912, 955
BseJI GATNNNNATC 2 cut(s) 591, 976
BseLI CCNNNNNNNGG 3 cut(s) 583, 827, 846
BseMI GCAATG 2 cut(s) 576, 1146
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 832
BseXI GCAGC 7 cut(s) 334, 498, 598, 812, 953, 1045, 1148
BseYI CCCAGC 1 cut(s) 944
BshFI GGCC 3 cut(s) 258, 501, 954
BslI CCNNNNNNNGG 3 cut(s) 583, 827, 846
BsmAI GTCTC 3 cut(s) 166, 878, 1212
BsmBI CGTCTC 1 cut(s) 1212
BsmI GAATGC 1 cut(s) 890
BsnI GGCC 3 cut(s) 258, 501, 954
Bso31I GGTCTC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 1161
Bsp143I GATC 2 cut(s) 159, 1283
BspACI CCGC 3 cut(s) 5, 207, 1020
BspANI GGCC 3 cut(s) 258, 501, 954
BspCNI CTCAG 1 cut(s) 610
BspPI GGATC 2 cut(s) 167, 1291
BspQI GCTCTTC 1 cut(s) 1180
BspTI CTTAAG 1 cut(s) 1177
BspTNI GGTCTC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 576, 1146
BsrGI TGTACA 1 cut(s) 1161
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 2 cut(s) 657, 821
BssMI GATC 2 cut(s) 159, 1283
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 821
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 5 cut(s) 34, 411, 635, 749, 1088
Bst6I CTCTTC 3 cut(s) 268, 1180, 1273
BstACI GRCGYC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 1177
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 1 cut(s) 1161
BstC8I GCNNGC 4 cut(s) 837, 1040, 1146, 1239
BstDEI CTNAG 2 cut(s) 597, 1016
BstF5I GGATG 3 cut(s) 57, 912, 955
BstKTI GATC 2 cut(s) 162, 1286
BstMAI GTCTC 3 cut(s) 166, 878, 1212
BstMBI GATC 2 cut(s) 159, 1283
BstMWI GCNNNNNNNGC 5 cut(s) 255, 611, 797, 1017, 1145
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 630, 1042
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 1 cut(s) 745
BstV1I GCAGC 7 cut(s) 334, 498, 598, 812, 953, 1045, 1148
BstV2I GAAGAC 2 cut(s) 67, 1256
BstX2I RGATCY 1 cut(s) 1283
BstYI RGATCY 1 cut(s) 1283
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 3 cut(s) 258, 501, 954
BtgZI GCGATG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 1206
BtsCI GGATG 3 cut(s) 57, 912, 955
BtsIMutI CAGTG 3 cut(s) 21, 640, 1093
Cac8I GCNNGC 4 cut(s) 837, 1040, 1146, 1239
Csp6I GTAC 2 cut(s) 1162, 1201
CviAII CATG 5 cut(s) 25, 627, 1039, 1043, 1273
CviQI GTAC 2 cut(s) 1162, 1201
DdeI CTNAG 2 cut(s) 597, 1016
DpnI GATC 2 cut(s) 161, 1285
DpnII GATC 2 cut(s) 159, 1283
DraI TTTAAA 1 cut(s) 312
DraIII CACNNNGTG 1 cut(s) 809
Eam1104I CTCTTC 3 cut(s) 268, 1180, 1273
EarI CTCTTC 3 cut(s) 268, 1180, 1273
Eco130I CCWWGG 1 cut(s) 821
Eco31I GGTCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 821
EcoT22I ATGCAT 1 cut(s) 1044
ErhI CCWWGG 1 cut(s) 821
Esp3I CGTCTC 1 cut(s) 1212
FaeI CATG 5 cut(s) 28, 630, 1042, 1046, 1276
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 5 cut(s) 24, 626, 1038, 1042, 1272
FauI CCCGC 1 cut(s) 1013
Fnu4HI GCNGC 7 cut(s) 348, 487, 612, 801, 942, 1059, 1137
FokI GGATG 3 cut(s) 44, 899, 962
Fsp4HI GCNGC 7 cut(s) 348, 487, 612, 801, 942, 1059, 1137
FspBI CTAG 1 cut(s) 1008
GluI GCNGC 7 cut(s) 348, 487, 612, 801, 942, 1059, 1137
GsaI CCCAGC 1 cut(s) 948
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 258, 501, 954
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 5 cut(s) 28, 630, 1042, 1046, 1276
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 231, 362, 1091, 1168, 1252
HphI GGTGA 6 cut(s) 19, 22, 114, 196, 707, 821
Hpy166II GTNNAC 4 cut(s) 30, 394, 985, 1203
Hpy188I TCNGA 3 cut(s) 267, 428, 676
Hpy188III TCNNGA 2 cut(s) 649, 683
Hpy8I GTNNAC 4 cut(s) 30, 394, 985, 1203
HpyAV CCTTC 6 cut(s) 481, 576, 661, 728, 962, 1219
HpyCH4III ACNGT 5 cut(s) 34, 411, 635, 749, 1088
HpyCH4IV ACGT 3 cut(s) 381, 493, 1205
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 611, 797, 1017, 1145
HpyF3I CTNAG 2 cut(s) 597, 1016
HpySE526I ACGT 3 cut(s) 381, 493, 1205
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 5 cut(s) 28, 630, 1042, 1046, 1276
Kzo9I GATC 2 cut(s) 159, 1283
LguI GCTCTTC 1 cut(s) 1180
LmnI GCTCC 1 cut(s) 832
LpnPI CCDG 9 cut(s) 579, 644, 671, 744, 789, 813, 930, 968, 1308
Lsp1109I GCAGC 7 cut(s) 334, 498, 598, 812, 953, 1045, 1148
LweI GCATC 2 cut(s) 467, 1224
MaeI CTAG 1 cut(s) 1008
MaeII ACGT 3 cut(s) 381, 493, 1205
MaeIII GTNAC 5 cut(s) 43, 441, 629, 708, 997
MalI GATC 2 cut(s) 161, 1285
MbiI CCGCTC 1 cut(s) 209
MboI GATC 2 cut(s) 159, 1283
MboII GAAGA 7 cut(s) 67, 285, 518, 676, 1197, 1261, 1290
MflI RGATCY 1 cut(s) 1283
MluCI AATT 6 cut(s) 134, 503, 843, 963, 1229, 1316
MlyI GAGTC 2 cut(s) 1162, 1246
Mph1103I ATGCAT 1 cut(s) 1044
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 6 cut(s) 261, 311, 795, 974, 1083, 1178
MslI CAYNNNNRTG 3 cut(s) 35, 239, 1260
MspA1I CMGCKG 1 cut(s) 944
MspCI CTTAAG 1 cut(s) 1177
MspR9I CCNGG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 890
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 5 cut(s) 255, 611, 797, 1017, 1145
NdeII GATC 2 cut(s) 159, 1283
NlaIII CATG 5 cut(s) 28, 630, 1042, 1046, 1276
NmuCI GTSAC 2 cut(s) 43, 708
NsiI ATGCAT 1 cut(s) 1044
NspI RCATGY 2 cut(s) 630, 1042
OliI CACNNNNGTG 1 cut(s) 35
PaeI GCATGC 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 1180
PctI GAATGC 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 231, 362, 1091
PkrI GCNGC 7 cut(s) 349, 488, 613, 802, 943, 1060, 1138
PleI GAGTC 2 cut(s) 1162, 1246
PpsI GAGTC 2 cut(s) 1162, 1246
PsiI TTATAA 1 cut(s) 1152
Psp6I CCWGG 1 cut(s) 657
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 1 cut(s) 657
PsuI RGATCY 1 cut(s) 1283
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 2 cut(s) 1163, 1202
RsaNI GTAC 2 cut(s) 1162, 1201
RseI CAYNNNNRTG 3 cut(s) 35, 239, 1260
SapI GCTCTTC 1 cut(s) 1180
SaqAI TTAA 6 cut(s) 261, 311, 795, 974, 1083, 1178
SatI GCNGC 7 cut(s) 348, 487, 612, 801, 942, 1059, 1137
Sau3AI GATC 2 cut(s) 159, 1283
SchI GAGTC 2 cut(s) 1162, 1246
ScrFI CCNGG 1 cut(s) 659
SfaNI GCATC 2 cut(s) 467, 1224
SfcI CTRYAG 1 cut(s) 745
SmiMI CAYNNNNRTG 3 cut(s) 35, 239, 1260
SmlI CTYRAG 2 cut(s) 1177, 1209
SmoI CTYRAG 2 cut(s) 1177, 1209
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 6 cut(s) 134, 503, 843, 963, 1229, 1316
SsiI CCGC 3 cut(s) 5, 207, 1020
SspMI CTAG 1 cut(s) 1008
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 1 cut(s) 821
TaaI ACNGT 5 cut(s) 34, 411, 635, 749, 1088
TaiI ACGT 3 cut(s) 384, 496, 1208
TaqI TCGA 1 cut(s) 238
TasI AATT 6 cut(s) 134, 503, 843, 963, 1229, 1316
TatI WGTACW 2 cut(s) 1161, 1200
TfiI GAWTC 3 cut(s) 231, 362, 1091
Tru1I TTAA 6 cut(s) 261, 311, 795, 974, 1083, 1178
Tru9I TTAA 6 cut(s) 261, 311, 795, 974, 1083, 1178
TscAI CASTG 3 cut(s) 21, 640, 1093
TseFI GTSAC 2 cut(s) 43, 708
TseI GCWGC 7 cut(s) 347, 486, 611, 800, 941, 1058, 1136
Tsp45I GTSAC 2 cut(s) 43, 708
TspDTI ATGAA 5 cut(s) 223, 375, 391, 883, 1083
TspGWI ACGGA 2 cut(s) 464, 519
TspRI CASTG 3 cut(s) 21, 640, 1093
Vha464I CTTAAG 1 cut(s) 1177
XapI RAATTY 1 cut(s) 843
XceI RCATGY 2 cut(s) 630, 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 1008
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.