Prupe.3G137800_v2.0.a1

UBA-like domain (DUF1421)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
14541592 .. 14545338
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G137800.3

Sequence Viewer

Length: 1590 bp
ATGGCGTCTGGATCATCGGGTCGGGCCAACCCAGGCACACAGGGCTTCGATTTCGCGTCGGACGACATTCTCTGCTCGTACGAGGACTACGGCAACCAGGACTCCTCCAATGGCAACCACAGTGACCCAGTGATGGGAAATAATCCCAGCAAGCAGGATTTTCATAAAAGTAGGATGGCGAGACAATCAATGTTCTCTTCTGCTGCCTATAGCCAGCCGGAAGATTCTCTCCACCAAGATGTAATTGCTACTGTTGAAAAGAGCATGAAAAAATATGCTGACAATCTCATGCGCTTTCTTGAAGGAATTAGTTCACGGCTTTCACAATTGGAATTGTATTGCTACAATCTTGATAAGTCAATTGGTGAGATGCGTTCTGATTTAGTTCGTGATCACGGGGAAGCAGATTCAAAGCTCAAGTCTCTTGAGAAACATCTTCAAGAAGTTCATAGGTCTGTCCAGATCCTAAGGGACAAGCAAGAACTTGCTGAGACTCAGAAAGAATTAGCCAAGCTTCAGCTTGCACAGAAGGGATCTGCTTCATCAACCCATTCCCAGTCCAATGAGGAGAGAGCTTCCCCACCTACCTCTGATGGTCAGAAGACTGACAACACACCTGAGACACATAACCAGCAATTAGCTCTAGCCCTGCCCCATCAAGTAGCGCCACAACCACAGCCGGTGGCACCTCCCCCACAGGCCCCAACTCAGAATGTGACCCAACAACAATCTTATTATTTATCTCCAACCCAGTTACAAAACCAACCACCACCACAACATTCTCAGAATCAATATTTGCCTTCTGATTCTCAGTATCGAACCCCCCAAGTGCAAGACATCCCTAGGGTGGCACCACAGCCAACACAATCTCAAGTAAATCAGACACCACAAGTCCAATCTTTCCCTCAGTATCAGCAATTACCACAGCCTCAGCAGGTGCAATTTCCCCAACAGCCCTCTATGCAACCCCAGATGAGGCCCCCATCGACGACAAATGTTTACCCTTCCTATCCACCAGGTCAACAGACAAACCCATCTCCTCCAGAGGCTGTGCCAAGCAGCATGTCAATGCAAGTGCCATATTCCAGTATTCCTCAGCAAGGACCTGGTCGTTCTGATGCCATGCCTTTTGGATACAGTGGAGCTGGTAGACCAATACAACAGCAGCCTCCACCTCAGCAATTGAAGGGTGCTTTTGGAGCGCAAGCAGGAGAGGGATATGCTGCTTCTGGGCCTCACCCTGCACTTCCTCCAGGGAGTACATATATGATGTACGACGGTGAAGGGGGTAGAACTCATTATTCTGCGCAAGTGCCTCATTATGGATATCCTCCGACAAGTGCCTCTCATCAGACTCCACAGCCAACAACAGCTCCGAATCTTATGGCTCGGAATCCACAATTCATTCGTAACCACCCTTACAGCGAGTTGATTGAGAAATTGGCATCCATGGGCTTCAGGAGTGATCATGTTTTAAGTGTGATTCAGAGGATGGAGGAAAGGGGGGAACCCATTGATTTTAATGCCGTGATTGACAGGTTGTCAAATGTACATTCGTCTGGGGGTCCTCAGAGGGGATGGTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

530

Amino Acids

58.26

Weight (kDa)

6.09

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
Acc16I TGCGCA 1 cut(s) 1308
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 685, 850
AccI GTMKAC 1 cut(s) 1150
AccII CGCG 1 cut(s) 56
AclWI GGATC 3 cut(s) 19, 457, 541
AcuI CTGAAG 2 cut(s) 500, 1441
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 80, 1261, 1274, 1551
AfiI CCNNNNNNNGG 7 cut(s) 133, 134, 847, 975, 1100, 1322, 1574
AgsI TTSAA 5 cut(s) 257, 302, 411, 440, 1186
AhdI GACNNNNNGTC 1 cut(s) 1540
AjnI CCWGG 5 cut(s) 31, 96, 1015, 1105, 1252
AluBI AGCT 7 cut(s) 415, 514, 520, 575, 641, 1145, 1373
AluI AGCT 7 cut(s) 415, 514, 520, 575, 641, 1145, 1373
Alw26I GTCTC 4 cut(s) 175, 426, 485, 614
AlwI GGATC 3 cut(s) 19, 457, 541
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 4 cut(s) 24, 699, 977, 1232
ApeKI GCWGC 4 cut(s) 203, 1059, 1165, 1223
ArsI GACNNNNNNTTYG 2 cut(s) 404, 436
Asp700I GAANNNNTTC 1 cut(s) 310
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 4 cut(s) 294, 667, 1204, 1309
AspS9I GGNCC 6 cut(s) 24, 700, 978, 1103, 1232, 1565
AsuHPI GGTGA 3 cut(s) 377, 1229, 1292
AvaII GGWCC 2 cut(s) 1103, 1565
AvrII CCTAGG 1 cut(s) 842
AxyI CCTNAGG 1 cut(s) 467
BanI GGYRCC 2 cut(s) 685, 850
BbsI GAAGAC 1 cut(s) 608
BbvCI CCTCAGC 3 cut(s) 930, 1095, 1176
BbvI GCAGC 4 cut(s) 190, 1071, 1177, 1210
BccI CCATC 8 cut(s) 127, 169, 587, 663, 991, 1042, 1486, 1572
BceAI ACGGC 3 cut(s) 106, 332, 1511
BciT130I CCWGG 5 cut(s) 33, 98, 1017, 1107, 1254
BciVI GTATCC 1 cut(s) 1127
BclI TGATCA 2 cut(s) 391, 1465
BcoDI GTCTC 4 cut(s) 175, 426, 485, 614
BfaI CTAG 2 cut(s) 644, 843
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 925
BfuI GTATCC 1 cut(s) 1127
BisI GCNGC 4 cut(s) 204, 1060, 1166, 1224
BlnI CCTAGG 1 cut(s) 842
BlsI GCNGC 4 cut(s) 205, 1061, 1167, 1225
Bme1390I CCNGG 5 cut(s) 33, 98, 1017, 1107, 1254
Bme18I GGWCC 2 cut(s) 1103, 1565
BmeRI GACNNNNNGTC 1 cut(s) 1540
BmgT120I GGNCC 6 cut(s) 24, 700, 978, 1103, 1232, 1565
BmiI GGNNCC 6 cut(s) 687, 702, 852, 980, 1509, 1566
BmrFI CCNGG 5 cut(s) 33, 98, 1017, 1107, 1254
BmrI ACTGGG 3 cut(s) 122, 550, 745
BmsI GCATC 3 cut(s) 360, 1108, 1454
BmuI ACTGGG 3 cut(s) 122, 550, 745
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 2 cut(s) 1026, 1236
Bpu10I CCTNAGC 3 cut(s) 930, 1095, 1176
BpuEI CTTGAG 3 cut(s) 401, 446, 855
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 31, 842, 1253, 1449
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 1357, 1387
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 134, 847, 975, 1100, 1322, 1574
Bse118I RCCGGY 1 cut(s) 679
Bse1I ACTGG 4 cut(s) 128, 556, 751, 1086
Bse21I CCTNAGG 1 cut(s) 467
BseBI CCWGG 5 cut(s) 33, 98, 1017, 1107, 1254
BseDI CCNNGG 4 cut(s) 31, 842, 1253, 1449
BseGI GGATG 5 cut(s) 180, 837, 1445, 1497, 1583
BseLI CCNNNNNNNGG 7 cut(s) 133, 134, 847, 975, 1100, 1322, 1574
BseNI ACTGG 4 cut(s) 128, 556, 751, 1086
BseRI GAGGAG 3 cut(s) 94, 581, 1029
BseXI GCAGC 4 cut(s) 190, 1071, 1177, 1210
BseYI CCCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 1227
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 4 cut(s) 26, 701, 979, 1234
BshNI GGYRCC 2 cut(s) 685, 850
BsiSI CCGG 2 cut(s) 218, 680
BsiWI CGTACG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 7 cut(s) 133, 134, 847, 975, 1100, 1322, 1574
BsmAI GTCTC 4 cut(s) 175, 426, 485, 614
BsmFI GGGAC 1 cut(s) 485
BsnI GGCC 4 cut(s) 26, 701, 979, 1234
Bsp1407I TGTACA 1 cut(s) 1549
Bsp143I GATC 5 cut(s) 11, 391, 462, 533, 1465
Bsp19I CCATGG 1 cut(s) 1449
BspANI GGCC 4 cut(s) 26, 701, 979, 1234
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 6 cut(s) 687, 702, 852, 980, 1509, 1566
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 3 cut(s) 19, 457, 541
BspT107I GGYRCC 2 cut(s) 685, 850
BsrFI RCCGGY 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 1549
BsrI ACTGG 4 cut(s) 128, 556, 751, 1086
BssAI RCCGGY 1 cut(s) 679
BssECI CCNNGG 4 cut(s) 31, 842, 1253, 1449
BssMI GATC 5 cut(s) 11, 391, 462, 533, 1465
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 842, 1449
Bst2UI CCWGG 5 cut(s) 33, 98, 1017, 1107, 1254
Bst4CI ACNGT 4 cut(s) 122, 253, 1139, 1280
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 1549
BstC8I GCNNGC 4 cut(s) 152, 215, 522, 1206
BstDSI CCRYGG 1 cut(s) 1449
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 5 cut(s) 180, 837, 1445, 1497, 1583
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 4 cut(s) 294, 667, 1204, 1309
BstKTI GATC 5 cut(s) 14, 394, 465, 536, 1468
BstMAI GTCTC 4 cut(s) 175, 426, 485, 614
BstMBI GATC 5 cut(s) 11, 391, 462, 533, 1465
BstMWI GCNNNNNNNGC 3 cut(s) 42, 961, 1199
BstNI CCWGG 5 cut(s) 33, 98, 1017, 1107, 1254
BstNSI RCATGY 1 cut(s) 1066
BstSCI CCNGG 5 cut(s) 31, 96, 1015, 1105, 1252
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 4 cut(s) 190, 1071, 1177, 1210
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 462, 533
BstYI RGATCY 2 cut(s) 462, 533
Bsu36I CCTNAGG 1 cut(s) 467
BsuI GTATCC 1 cut(s) 1127
BsuRI GGCC 4 cut(s) 26, 701, 979, 1234
BtgI CCRYGG 1 cut(s) 1449
BtsCI GGATG 5 cut(s) 180, 837, 1445, 1497, 1583
BtsIMutI CAGTG 3 cut(s) 127, 135, 1144
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 4 cut(s) 152, 215, 522, 1206
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 4 cut(s) 294, 667, 1204, 1309
Cfr10I RCCGGY 1 cut(s) 679
Cfr13I GGNCC 6 cut(s) 24, 700, 978, 1103, 1232, 1565
CseI GACGC 1 cut(s) 45
CsiI ACCWGGT 2 cut(s) 1015, 1105
Csp6I GTAC 4 cut(s) 79, 1260, 1273, 1550
CviAII CATG 6 cut(s) 265, 289, 1063, 1123, 1450, 1469
CviQI GTAC 4 cut(s) 79, 1260, 1273, 1550
DpnI GATC 5 cut(s) 13, 393, 464, 535, 1467
DpnII GATC 5 cut(s) 11, 391, 462, 533, 1465
DriI GACNNNNNGTC 1 cut(s) 1540
Eam1104I CTCTTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 1540
EarI CTCTTC 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 842, 1449
Eco32I GATATC 1 cut(s) 1328
Eco47I GGWCC 2 cut(s) 1103, 1565
Eco57I CTGAAG 2 cut(s) 500, 1441
Eco81I CCTNAGG 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoO109I RGGNCCY 4 cut(s) 700, 978, 1103, 1565
EcoRII CCWGG 5 cut(s) 31, 96, 1015, 1105, 1252
EcoRV GATATC 1 cut(s) 1328
EcoT14I CCWWGG 2 cut(s) 842, 1449
ErhI CCWWGG 2 cut(s) 842, 1449
FaeI CATG 6 cut(s) 268, 292, 1066, 1126, 1453, 1472
FaqI GGGAC 1 cut(s) 485
FatI CATG 6 cut(s) 264, 288, 1062, 1122, 1449, 1468
FbaI TGATCA 2 cut(s) 391, 1465
FblI GTMKAC 1 cut(s) 1150
Fnu4HI GCNGC 4 cut(s) 204, 1060, 1166, 1224
FokI GGATG 4 cut(s) 187, 824, 1432, 1504
Fsp4HI GCNGC 4 cut(s) 204, 1060, 1166, 1224
FspBI CTAG 2 cut(s) 644, 843
FspI TGCGCA 1 cut(s) 1308
GlaI GCGC 4 cut(s) 293, 666, 1203, 1308
GluI GCNGC 4 cut(s) 204, 1060, 1166, 1224
GsaI CCCAGC 1 cut(s) 150
GsuI CTGGAG 2 cut(s) 1026, 1236
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 4 cut(s) 26, 701, 979, 1234
HapII CCGG 2 cut(s) 218, 680
HgaI GACGC 1 cut(s) 45
HhaI GCGC 4 cut(s) 294, 667, 1204, 1309
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 268, 292, 1066, 1126, 1453, 1472
Hin6I GCGC 4 cut(s) 292, 665, 1202, 1307
HinP1I GCGC 4 cut(s) 292, 665, 1202, 1307
HincII GTYRAC 1 cut(s) 1022
HindII GTYRAC 1 cut(s) 1022
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 2 cut(s) 218, 680
HphI GGTGA 3 cut(s) 377, 1229, 1292
Hpy166II GTNNAC 4 cut(s) 314, 1000, 1022, 1151
Hpy188III TCNNGA 9 cut(s) 9, 299, 350, 389, 425, 440, 460, 1043, 1459
Hpy8I GTNNAC 4 cut(s) 314, 1000, 1022, 1151
Hpy99I CGWCG 3 cut(s) 61, 991, 1280
HpyAV CCTTC 6 cut(s) 296, 523, 810, 1014, 1180, 1277
HpyCH4III ACNGT 4 cut(s) 122, 253, 1139, 1280
HpyCH4V TGCA 6 cut(s) 524, 832, 940, 964, 1072, 1244
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 961, 1199
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 268, 292, 1066, 1126, 1453, 1472
HspAI GCGC 4 cut(s) 292, 665, 1202, 1307
Ksp22I TGATCA 2 cut(s) 391, 1465
Kzo9I GATC 5 cut(s) 11, 391, 462, 533, 1465
LmnI GCTCC 3 cut(s) 1142, 1199, 1378
Lsp1109I GCAGC 4 cut(s) 190, 1071, 1177, 1210
LweI GCATC 3 cut(s) 360, 1108, 1454
MabI ACCWGGT 2 cut(s) 1015, 1105
MaeI CTAG 2 cut(s) 644, 843
MaeIII GTNAC 4 cut(s) 122, 715, 753, 1409
MalI GATC 5 cut(s) 13, 393, 464, 535, 1467
MboI GATC 5 cut(s) 11, 391, 462, 533, 1465
MboII GAAGA 4 cut(s) 189, 233, 428, 613
MfeI CAATTG 3 cut(s) 326, 360, 1181
MflI RGATCY 2 cut(s) 462, 533
MlyI GAGTC 3 cut(s) 95, 487, 1348
MmeI TCCRAC 3 cut(s) 39, 770, 1358
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 2 cut(s) 1475, 1521
MslI CAYNNNNRTG 2 cut(s) 237, 1067
MspI CCGG 2 cut(s) 218, 680
MspR9I CCNGG 5 cut(s) 33, 98, 1017, 1107, 1254
MunI CAATTG 3 cut(s) 326, 360, 1181
MvaI CCWGG 5 cut(s) 33, 98, 1017, 1107, 1254
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 42, 961, 1199
NcoI CCATGG 1 cut(s) 1449
NdeII GATC 5 cut(s) 11, 391, 462, 533, 1465
NlaIII CATG 6 cut(s) 268, 292, 1066, 1126, 1453, 1472
NlaIV GGNNCC 6 cut(s) 687, 702, 852, 980, 1509, 1566
NmuCI GTSAC 2 cut(s) 122, 715
NsbI TGCGCA 1 cut(s) 1308
NspI RCATGY 1 cut(s) 1066
PaqCI CACCTGC 1 cut(s) 925
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 7 cut(s) 224, 407, 787, 806, 1378, 1393, 1483
Pfl23II CGTACG 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 1107
PkrI GCNGC 4 cut(s) 205, 1061, 1167, 1225
PleI GAGTC 3 cut(s) 95, 487, 1348
PpsI GAGTC 3 cut(s) 95, 487, 1348
PpuMI RGGWCCY 2 cut(s) 1103, 1565
Psp5II RGGWCCY 2 cut(s) 1103, 1565
Psp6I CCWGG 5 cut(s) 31, 96, 1015, 1105, 1252
PspFI CCCAGC 1 cut(s) 146
PspGI CCWGG 5 cut(s) 31, 96, 1015, 1105, 1252
PspLI CGTACG 1 cut(s) 78
PspN4I GGNNCC 6 cut(s) 687, 702, 852, 980, 1509, 1566
PspPI GGNCC 6 cut(s) 24, 700, 978, 1103, 1232, 1565
PspPPI RGGWCCY 2 cut(s) 1103, 1565
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 2 cut(s) 462, 533
PsyI GACNNNGTC 1 cut(s) 1107
RsaI GTAC 4 cut(s) 80, 1261, 1274, 1551
RsaNI GTAC 4 cut(s) 79, 1260, 1273, 1550
RseI CAYNNNNRTG 2 cut(s) 237, 1067
SaqAI TTAA 2 cut(s) 1475, 1521
SatI GCNGC 4 cut(s) 204, 1060, 1166, 1224
Sau3AI GATC 5 cut(s) 11, 391, 462, 533, 1465
Sau96I GGNCC 6 cut(s) 24, 700, 978, 1103, 1232, 1565
SchI GAGTC 3 cut(s) 95, 487, 1348
ScrFI CCNGG 5 cut(s) 33, 98, 1017, 1107, 1254
SexAI ACCWGGT 2 cut(s) 1015, 1105
SfaNI GCATC 3 cut(s) 360, 1108, 1454
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 2 cut(s) 1103, 1565
SmiMI CAYNNNNRTG 2 cut(s) 237, 1067
SmlI CTYRAG 3 cut(s) 416, 425, 870
SmoI CTYRAG 3 cut(s) 416, 425, 870
SspI AATATT 1 cut(s) 794
SspMI CTAG 2 cut(s) 644, 843
StyD4I CCNGG 5 cut(s) 31, 96, 1015, 1105, 1252
StyI CCWWGG 2 cut(s) 842, 1449
TaaI ACNGT 4 cut(s) 122, 253, 1139, 1280
TaqI TCGA 3 cut(s) 48, 817, 986
TatI WGTACW 2 cut(s) 1259, 1549
TfiI GAWTC 7 cut(s) 224, 407, 787, 806, 1378, 1393, 1483
Tru1I TTAA 2 cut(s) 1475, 1521
Tru9I TTAA 2 cut(s) 1475, 1521
TscAI CASTG 3 cut(s) 127, 135, 1144
TseFI GTSAC 2 cut(s) 122, 715
TseI GCWGC 4 cut(s) 203, 1059, 1165, 1223
Tsp45I GTSAC 2 cut(s) 122, 715
TspDTI ATGAA 5 cut(s) 152, 281, 437, 531, 1393
TspRI CASTG 3 cut(s) 127, 135, 1144
Tth111I GACNNNGTC 1 cut(s) 1107
VpaK11BI GGWCC 2 cut(s) 1103, 1565
XagI CCTNNNNNAGG 1 cut(s) 1098
XceI RCATGY 1 cut(s) 1066
XmaJI CCTAGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 1150
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 2 cut(s) 644, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.