UBA-like domain (DUF1421)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28300 AT4G28300 |
| fragaria_vesca | FvH4_6g26191 FvH4_6g26191 |
| malus_domestica | MD09G1247500.v1.1 MD17G1240400.v1.1 |
| prunus_persica | Prupe.3G137800_v2.0.a1 Prupe.3G137800_v2.0.a1 Prupe.3G137800_v2.0.a1 Prupe.6G316300_v2.0.a1 |
| pyrus_communis | pycom09g16490 pycom17g24370 |
| rosa_chinensis | RchiOBHm_Chr2g0126471 |
| rosa_laevigata | RLG00000018905 |
| rosa_roxburghii | Rroxscaffold_2G00117150 |
| rosa_rugosa | Rorug02G0263500 |
| rosa_samantha | Rh2AG320000 Rh2BG328700 Rh2CG308400 Rh2DG348000 |
| rosa_wichuraiana | Rw2G025940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1042 |
| AccB1I | GGYRCC | 3 cut(s) | 280, 301, 1042 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 253 |
| AccI | GTMKAC | 2 cut(s) | 609, 879 |
| AciI | CCGC | 6 cut(s) | 104, 323, 398, 539, 779, 1199 |
| AclWI | GGATC | 2 cut(s) | 157, 719 |
| AcoI | YGGCCR | 2 cut(s) | 473, 1102 |
| AcuI | CTGAAG | 1 cut(s) | 116 |
| AcyI | GRCGYC | 1 cut(s) | 281 |
| AfaI | GTAC | 3 cut(s) | 660, 868, 1044 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 253, 588, 707, 713, 821, 1169, 1198 |
| AgsI | TTSAA | 3 cut(s) | 46, 162, 1141 |
| AjnI | CCWGG | 3 cut(s) | 706, 814, 859 |
| AluBI | AGCT | 8 cut(s) | 21, 125, 130, 136, 191, 221, 752, 971 |
| AluI | AGCT | 8 cut(s) | 21, 125, 130, 136, 191, 221, 752, 971 |
| Alw21I | GWGCWC | 1 cut(s) | 811 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 2 cut(s) | 157, 719 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 656 |
| AoxI | GGCC | 6 cut(s) | 473, 590, 710, 715, 1102, 1189 |
| ApeKI | GCWGC | 6 cut(s) | 289, 292, 766, 769, 772, 833 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 10, 42 |
| Asp718I | GGTACC | 1 cut(s) | 1042 |
| AspLEI | GCGC | 1 cut(s) | 283 |
| AspS9I | GGNCC | 5 cut(s) | 710, 715, 839, 1159, 1190 |
| AsuC2I | CCSGG | 2 cut(s) | 714, 1194 |
| AsuHPI | GGTGA | 3 cut(s) | 186, 475, 830 |
| AvaII | GGWCC | 2 cut(s) | 839, 1159 |
| AxyI | CCTNAGG | 1 cut(s) | 384 |
| BalI | TGGCCA | 1 cut(s) | 1104 |
| BanI | GGYRCC | 3 cut(s) | 280, 301, 1042 |
| Bbv12I | GWGCWC | 1 cut(s) | 811 |
| BbvCI | CCTCAGC | 1 cut(s) | 783 |
| BbvI | GCAGC | 6 cut(s) | 301, 304, 778, 781, 784, 820 |
| BccI | CCATC | 6 cut(s) | 238, 604, 649, 1084, 1159, 1167 |
| BceAI | ACGGC | 2 cut(s) | 488, 702 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 664, 698, 1052, 1086 |
| BciT130I | CCWGG | 3 cut(s) | 708, 816, 861 |
| BcnI | CCSGG | 2 cut(s) | 714, 1194 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 122, 624 |
| BfoI | RGCGCY | 1 cut(s) | 284 |
| BisI | GCNGC | 6 cut(s) | 290, 293, 767, 770, 773, 834 |
| BlpI | GCTNAGC | 1 cut(s) | 126 |
| BlsI | GCNGC | 6 cut(s) | 291, 294, 768, 771, 774, 835 |
| BmcAI | AGTACT | 1 cut(s) | 868 |
| Bme1390I | CCNGG | 5 cut(s) | 708, 714, 816, 861, 1194 |
| Bme18I | GGWCC | 2 cut(s) | 839, 1159 |
| BmgT120I | GGNCC | 5 cut(s) | 710, 715, 839, 1159, 1190 |
| BmiI | GGNNCC | 6 cut(s) | 282, 303, 1044, 1160, 1161, 1192 |
| BmrFI | CCNGG | 5 cut(s) | 708, 714, 816, 861, 1194 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 5 cut(s) | 44, 164, 199, 666, 948 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpmI | CTGGAG | 2 cut(s) | 633, 843 |
| Bpu10I | CCTNAGC | 1 cut(s) | 783 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 126 |
| BpuEI | CTTGAG | 2 cut(s) | 7, 52 |
| BpuMI | CCSGG | 2 cut(s) | 714, 1194 |
| BsaBI | GATNNNNATC | 1 cut(s) | 154 |
| BsaHI | GRCGYC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 6 cut(s) | 458, 470, 707, 860, 1047, 1192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 955, 985 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 253, 588, 707, 713, 821, 1169, 1198 |
| Bse1I | ACTGG | 3 cut(s) | 364, 508, 680 |
| Bse21I | CCTNAGG | 1 cut(s) | 384 |
| Bse8I | GATNNNNATC | 1 cut(s) | 154 |
| BseBI | CCWGG | 3 cut(s) | 708, 816, 861 |
| BseDI | CCNNGG | 6 cut(s) | 458, 470, 707, 860, 1047, 1192 |
| BseGI | GGATG | 5 cut(s) | 230, 394, 1095, 1147, 1178 |
| BseJI | GATNNNNATC | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 253, 588, 707, 713, 821, 1169, 1198 |
| BseMII | CTCAG | 6 cut(s) | 125, 227, 398, 440, 797, 1178 |
| BseNI | ACTGG | 3 cut(s) | 364, 508, 680 |
| BseRI | GAGGAG | 1 cut(s) | 636 |
| BseXI | GCAGC | 6 cut(s) | 301, 304, 778, 781, 784, 820 |
| BsgI | GTGCAG | 1 cut(s) | 834 |
| BshFI | GGCC | 6 cut(s) | 475, 592, 712, 717, 1104, 1191 |
| BshNI | GGYRCC | 3 cut(s) | 280, 301, 1042 |
| BsiHKAI | GWGCWC | 1 cut(s) | 811 |
| BsiSI | CCGG | 2 cut(s) | 713, 1194 |
| BslFI | GGGAC | 2 cut(s) | 101, 1145 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 253, 588, 707, 713, 821, 1169, 1198 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmFI | GGGAC | 2 cut(s) | 101, 1145 |
| BsmI | GAATGC | 1 cut(s) | 1147 |
| BsnI | GGCC | 6 cut(s) | 475, 592, 712, 717, 1104, 1191 |
| Bsp1286I | GDGCHC | 1 cut(s) | 811 |
| Bsp143I | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 126 |
| Bsp19I | CCATGG | 1 cut(s) | 1047 |
| BspACI | CCGC | 6 cut(s) | 104, 323, 398, 539, 779, 1199 |
| BspANI | GGCC | 6 cut(s) | 475, 592, 712, 717, 1104, 1191 |
| BspCNI | CTCAG | 6 cut(s) | 124, 226, 397, 439, 796, 1177 |
| BspHI | TCATGA | 1 cut(s) | 1221 |
| BspLI | GGNNCC | 6 cut(s) | 282, 303, 1044, 1160, 1161, 1192 |
| BspPI | GGATC | 2 cut(s) | 157, 719 |
| BspT107I | GGYRCC | 3 cut(s) | 280, 301, 1042 |
| BsrI | ACTGG | 3 cut(s) | 364, 508, 680 |
| BssECI | CCNNGG | 6 cut(s) | 458, 470, 707, 860, 1047, 1192 |
| BssMI | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| BssNI | GRCGYC | 1 cut(s) | 281 |
| BssT1I | CCWWGG | 2 cut(s) | 458, 1047 |
| Bst2UI | CCWGG | 3 cut(s) | 708, 816, 861 |
| Bst4CI | ACNGT | 2 cut(s) | 567, 887 |
| BstACI | GRCGYC | 1 cut(s) | 281 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 3 cut(s) | 138, 671, 1075 |
| BstDEI | CTNAG | 7 cut(s) | 111, 126, 213, 384, 426, 783, 1164 |
| BstDSI | CCRYGG | 2 cut(s) | 470, 1047 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 705, 1167 |
| BstF5I | GGATG | 5 cut(s) | 230, 394, 1095, 1147, 1178 |
| BstH2I | RGCGCY | 1 cut(s) | 284 |
| BstHHI | GCGC | 1 cut(s) | 283 |
| BstKTI | GATC | 4 cut(s) | 81, 152, 727, 1066 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 218, 289, 322, 454, 772, 778, 806, 1188 |
| BstNI | CCWGG | 3 cut(s) | 708, 816, 861 |
| BstNSI | RCATGY | 1 cut(s) | 673 |
| BstSCI | CCNGG | 5 cut(s) | 706, 712, 814, 859, 1192 |
| BstV1I | GCAGC | 6 cut(s) | 301, 304, 778, 781, 784, 820 |
| BstX2I | RGATCY | 1 cut(s) | 149 |
| BstYI | RGATCY | 1 cut(s) | 149 |
| Bsu36I | CCTNAGG | 1 cut(s) | 384 |
| BsuRI | GGCC | 6 cut(s) | 475, 592, 712, 717, 1104, 1191 |
| BtgI | CCRYGG | 2 cut(s) | 470, 1047 |
| BtgZI | GCGATG | 1 cut(s) | 1197 |
| BtsCI | GGATG | 5 cut(s) | 230, 394, 1095, 1147, 1178 |
| BtsI | GCAGTG | 2 cut(s) | 846, 1131 |
| BtsIMutI | CAGTG | 4 cut(s) | 687, 846, 892, 1131 |
| Cac8I | GCNNGC | 3 cut(s) | 138, 671, 1075 |
| CaiI | CAGNNNCTG | 1 cut(s) | 656 |
| CciI | TCATGA | 1 cut(s) | 1221 |
| CfoI | GCGC | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 5 cut(s) | 710, 715, 839, 1159, 1190 |
| CsiI | ACCWGGT | 1 cut(s) | 814 |
| Csp6I | GTAC | 3 cut(s) | 659, 867, 1043 |
| CviAII | CATG | 4 cut(s) | 670, 730, 1048, 1222 |
| CviQI | GTAC | 3 cut(s) | 659, 867, 1043 |
| DdeI | CTNAG | 7 cut(s) | 111, 126, 213, 384, 426, 783, 1164 |
| DinI | GGCGCC | 1 cut(s) | 282 |
| DpnI | GATC | 4 cut(s) | 80, 151, 726, 1065 |
| DpnII | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| EaeI | YGGCCR | 2 cut(s) | 473, 1102 |
| EciI | GGCGGA | 1 cut(s) | 768 |
| Eco130I | CCWWGG | 2 cut(s) | 458, 1047 |
| Eco32I | GATATC | 1 cut(s) | 926 |
| Eco47I | GGWCC | 2 cut(s) | 839, 1159 |
| Eco57I | CTGAAG | 1 cut(s) | 116 |
| Eco81I | CCTNAGG | 1 cut(s) | 384 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 705, 1167 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1159, 1190 |
| EcoRII | CCWGG | 3 cut(s) | 706, 814, 859 |
| EcoRV | GATATC | 1 cut(s) | 926 |
| EcoT14I | CCWWGG | 2 cut(s) | 458, 1047 |
| EgeI | GGCGCC | 1 cut(s) | 282 |
| EheI | GGCGCC | 1 cut(s) | 282 |
| ErhI | CCWWGG | 2 cut(s) | 458, 1047 |
| FaeI | CATG | 4 cut(s) | 673, 733, 1051, 1225 |
| FaqI | GGGAC | 2 cut(s) | 101, 1145 |
| FatI | CATG | 4 cut(s) | 669, 729, 1047, 1221 |
| FblI | GTMKAC | 2 cut(s) | 609, 879 |
| Fnu4HI | GCNGC | 6 cut(s) | 290, 293, 767, 770, 773, 834 |
| FokI | GGATG | 5 cut(s) | 217, 381, 1102, 1134, 1185 |
| Fsp4HI | GCNGC | 6 cut(s) | 290, 293, 767, 770, 773, 834 |
| FspBI | CTAG | 2 cut(s) | 122, 624 |
| GlaI | GCGC | 1 cut(s) | 282 |
| GluI | GCNGC | 6 cut(s) | 290, 293, 767, 770, 773, 834 |
| GsuI | CTGGAG | 2 cut(s) | 633, 843 |
| HaeII | RGCGCY | 1 cut(s) | 284 |
| HaeIII | GGCC | 6 cut(s) | 475, 592, 712, 717, 1104, 1191 |
| HapII | CCGG | 2 cut(s) | 713, 1194 |
| HhaI | GCGC | 1 cut(s) | 283 |
| Hin1I | GRCGYC | 1 cut(s) | 281 |
| Hin1II | CATG | 4 cut(s) | 673, 733, 1051, 1225 |
| Hin6I | GCGC | 1 cut(s) | 281 |
| HinP1I | GCGC | 1 cut(s) | 281 |
| HincII | GTYRAC | 1 cut(s) | 629 |
| HindII | GTYRAC | 1 cut(s) | 629 |
| HindIII | AAGCTT | 1 cut(s) | 128 |
| HinfI | GANTC | 9 cut(s) | 13, 334, 403, 422, 493, 544, 653, 991, 1081 |
| HpaII | CCGG | 2 cut(s) | 713, 1194 |
| HphI | GGTGA | 3 cut(s) | 186, 475, 830 |
| Hpy166II | GTNNAC | 4 cut(s) | 65, 610, 629, 880 |
| Hpy188I | TCNGA | 8 cut(s) | 114, 208, 216, 235, 724, 990, 1086, 1167 |
| Hpy188III | TCNNGA | 6 cut(s) | 31, 46, 419, 650, 1057, 1222 |
| Hpy8I | GTNNAC | 4 cut(s) | 65, 610, 629, 880 |
| HpyAV | CCTTC | 2 cut(s) | 884, 1181 |
| HpyCH4III | ACNGT | 2 cut(s) | 567, 887 |
| HpyCH4IV | ACGT | 2 cut(s) | 1068, 1244 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 218, 289, 322, 454, 772, 778, 806, 1188 |
| HpyF3I | CTNAG | 7 cut(s) | 111, 126, 213, 384, 426, 783, 1164 |
| HpySE526I | ACGT | 2 cut(s) | 1068, 1244 |
| Hsp92I | GRCGYC | 1 cut(s) | 281 |
| Hsp92II | CATG | 4 cut(s) | 673, 733, 1051, 1225 |
| HspAI | GCGC | 1 cut(s) | 281 |
| KasI | GGCGCC | 1 cut(s) | 280 |
| KflI | GGGWCCC | 1 cut(s) | 1159 |
| KpnI | GGTACC | 1 cut(s) | 1046 |
| Kzo9I | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| LmnI | GCTCC | 3 cut(s) | 749, 976, 1059 |
| Lsp1109I | GCAGC | 6 cut(s) | 301, 304, 778, 781, 784, 820 |
| LweI | GCATC | 5 cut(s) | 44, 164, 199, 666, 948 |
| MabI | ACCWGGT | 1 cut(s) | 814 |
| MaeI | CTAG | 2 cut(s) | 122, 624 |
| MaeII | ACGT | 2 cut(s) | 1068, 1244 |
| MaeIII | GTNAC | 3 cut(s) | 331, 366, 463 |
| MalI | GATC | 4 cut(s) | 80, 151, 726, 1065 |
| MboI | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| MboII | GAAGA | 3 cut(s) | 16, 34, 150 |
| MfeI | CAATTG | 1 cut(s) | 251 |
| MflI | RGATCY | 1 cut(s) | 149 |
| MhlI | GDGCHC | 1 cut(s) | 811 |
| MlsI | TGGCCA | 1 cut(s) | 1104 |
| MluCI | AATT | 5 cut(s) | 251, 533, 554, 998, 1037 |
| MluNI | TGGCCA | 1 cut(s) | 1104 |
| Mly113I | GGCGCC | 1 cut(s) | 281 |
| MlyI | GAGTC | 4 cut(s) | 22, 328, 553, 662 |
| MmeI | TCCRAC | 1 cut(s) | 717 |
| Mox20I | TGGCCA | 1 cut(s) | 1104 |
| MscI | TGGCCA | 1 cut(s) | 1104 |
| MseI | TTAA | 1 cut(s) | 1119 |
| MslI | CAYNNNNRTG | 1 cut(s) | 674 |
| Msp20I | TGGCCA | 1 cut(s) | 1104 |
| MspI | CCGG | 2 cut(s) | 713, 1194 |
| MspR9I | CCNGG | 5 cut(s) | 708, 714, 816, 861, 1194 |
| MunI | CAATTG | 1 cut(s) | 251 |
| Mva1269I | GAATGC | 1 cut(s) | 1147 |
| MvaI | CCWGG | 3 cut(s) | 708, 816, 861 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 218, 289, 322, 454, 772, 778, 806, 1188 |
| NarI | GGCGCC | 1 cut(s) | 281 |
| NciI | CCSGG | 2 cut(s) | 714, 1194 |
| NcoI | CCATGG | 1 cut(s) | 1047 |
| NdeII | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| NlaIII | CATG | 4 cut(s) | 673, 733, 1051, 1225 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 303, 1044, 1160, 1161, 1192 |
| NmuCI | GTSAC | 2 cut(s) | 331, 463 |
| NspI | RCATGY | 1 cut(s) | 673 |
| PaeI | GCATGC | 1 cut(s) | 673 |
| PagI | TCATGA | 1 cut(s) | 1221 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 518, 1074 |
| PctI | GAATGC | 1 cut(s) | 1147 |
| PfeI | GAWTC | 5 cut(s) | 403, 422, 493, 991, 1081 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 253 |
| PkrI | GCNGC | 6 cut(s) | 291, 294, 768, 771, 774, 835 |
| PleI | GAGTC | 4 cut(s) | 21, 328, 552, 661 |
| PluTI | GGCGCC | 1 cut(s) | 284 |
| PpsI | GAGTC | 4 cut(s) | 21, 328, 552, 661 |
| PpuMI | RGGWCCY | 1 cut(s) | 1159 |
| Psp5II | RGGWCCY | 1 cut(s) | 1159 |
| Psp6I | CCWGG | 3 cut(s) | 706, 814, 859 |
| PspGI | CCWGG | 3 cut(s) | 706, 814, 859 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 303, 1044, 1160, 1161, 1192 |
| PspPI | GGNCC | 5 cut(s) | 710, 715, 839, 1159, 1190 |
| PspPPI | RGGWCCY | 1 cut(s) | 1159 |
| PstNI | CAGNNNCTG | 1 cut(s) | 656 |
| PsuI | RGATCY | 1 cut(s) | 149 |
| RsaI | GTAC | 3 cut(s) | 660, 868, 1044 |
| RsaNI | GTAC | 3 cut(s) | 659, 867, 1043 |
| RseI | CAYNNNNRTG | 1 cut(s) | 674 |
| SaqAI | TTAA | 1 cut(s) | 1119 |
| SatI | GCNGC | 6 cut(s) | 290, 293, 767, 770, 773, 834 |
| Sau3AI | GATC | 4 cut(s) | 78, 149, 724, 1063 |
| Sau96I | GGNCC | 5 cut(s) | 710, 715, 839, 1159, 1190 |
| ScaI | AGTACT | 1 cut(s) | 868 |
| SchI | GAGTC | 4 cut(s) | 22, 328, 553, 662 |
| ScrFI | CCNGG | 5 cut(s) | 708, 714, 816, 861, 1194 |
| SduI | GDGCHC | 1 cut(s) | 811 |
| SexAI | ACCWGGT | 1 cut(s) | 814 |
| SfaNI | GCATC | 5 cut(s) | 44, 164, 199, 666, 948 |
| SfoI | GGCGCC | 1 cut(s) | 282 |
| SinI | GGWCC | 2 cut(s) | 839, 1159 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 674 |
| SmlI | CTYRAG | 2 cut(s) | 22, 31 |
| SmoI | CTYRAG | 2 cut(s) | 22, 31 |
| SphI | GCATGC | 1 cut(s) | 673 |
| Sse9I | AATT | 5 cut(s) | 251, 533, 554, 998, 1037 |
| SsiI | CCGC | 6 cut(s) | 104, 323, 398, 539, 779, 1199 |
| SspDI | GGCGCC | 1 cut(s) | 280 |
| SspI | AATATT | 3 cut(s) | 410, 689, 908 |
| SspMI | CTAG | 2 cut(s) | 122, 624 |
| StyD4I | CCNGG | 5 cut(s) | 706, 712, 814, 859, 1192 |
| StyI | CCWWGG | 2 cut(s) | 458, 1047 |
| TaaI | ACNGT | 2 cut(s) | 567, 887 |
| TaiI | ACGT | 2 cut(s) | 1071, 1247 |
| TaqI | TCGA | 3 cut(s) | 77, 433, 757 |
| TasI | AATT | 5 cut(s) | 251, 533, 554, 998, 1037 |
| TatI | WGTACW | 1 cut(s) | 866 |
| TfiI | GAWTC | 5 cut(s) | 403, 422, 493, 991, 1081 |
| Tru1I | TTAA | 1 cut(s) | 1119 |
| Tru9I | TTAA | 1 cut(s) | 1119 |
| TscAI | CASTG | 4 cut(s) | 687, 853, 892, 1131 |
| TseFI | GTSAC | 2 cut(s) | 331, 463 |
| TseI | GCWGC | 6 cut(s) | 289, 292, 766, 769, 772, 833 |
| Tsp45I | GTSAC | 2 cut(s) | 331, 463 |
| TspDTI | ATGAA | 3 cut(s) | 17, 1200, 1210 |
| TspGWI | ACGGA | 1 cut(s) | 510 |
| TspRI | CASTG | 4 cut(s) | 687, 853, 892, 1131 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 2 cut(s) | 839, 1159 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 705, 1167 |
| XceI | RCATGY | 1 cut(s) | 673 |
| XmiI | GTMKAC | 2 cut(s) | 609, 879 |
| XspI | CTAG | 2 cut(s) | 122, 624 |
| ZrmI | AGTACT | 1 cut(s) | 868 |