RLG00000018905

UBA-like domain (DUF1421)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010117
Physical Location & Seq
Forward (+)
42568949 .. 42572065
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018905

Sequence Viewer

Length: 1485 bp
ATGGCAAGATCACCACTGTACACTTCTGCTGCTTATGGCCAGCCTGAAGACTCTCTCAACCAAGAAGTAATTGCTACTGTTGAAAAGAGCATGAAAAAATATGCTGACAATCTCATGCGCTTCCTTGAAGGAATTAGTTCACGGCTGTCACAGTTGGAATTATATTGCTACAATGTTGATAAGTCAATCGGTGAGATGCGTTCTGATTTAAATCGTGATCATAGCGAGGCAGATTCAAAGCTCAAGTGTCTTGAGAAACATCTTCAAGAAGTCCATAGGTCTGTCCAGATCCTGAGAGACAAGCAAGAACTTGCTGAGACTCAAAAAGAATTAGCCAAGCTTCAGCTTGCACAGAAAGGATCTTCTTCATCAACCCATTCACAATCTAATGAGGAAAGAGCTTCACCACCTACCTCAGATGGTCAGAAGACTGACAACACATCTGAACATAACCAGCAATTAGCTCTTGCCTTACCCCATCAAGTAGCACCACAACAACAGCCAGTGGCACCTCCCCCACAGGCGCCAACTCAGAATGTGACCCAACCACAACAGCCCTATTATTTACCTCAAACTCAGCTATCAAATCCACCACCCCCACAACAGCATCCTCAGAGTCAATATTTGGCTTCGGATCCTCAGTATCGAACCCCGCAACTGCAAGACCCTAGAGTGGCACCACAGCCAACACAATCTCAAGTAAATCAACCACAAGTCCAACCGTTCCCTCAGTATCCACAGCAATTACCACAACAGTTGCCTCAGCAGGTGCAGTATCCACAACAGCCCTCAGTGCAGCCCCAGATGAGGCCCCCATCAACACCTGTGTACCCACCATACCCACCTGGTCAACAGGTGAACCCACCATACCCACCTGGTCAACAGGCGAACCCACCATACCCATCTGGTCAACAGACGAACCCATCTCCTCCAGAGACTCTGCCAAACAGCATGCCAATGCAAGTATCGTATTCGAGTGTTCCTCAGCCTGGTTCTGGTCGTTCTGATGCCATGCCTTTTGGATATAGCGGAGCTGGTAGAACAATGCCACAGCAGCCTCCACCTCAGCAGATCAAGGGTGCTTTTGGAGCTCAACAAGGTGATGCGTATGCCTCTGCTGGGCCTCACCCTGCACTTCCCCCAGGGAGTACATATATGATGTATGATAGTGAAGGAGGTAGAAATCATTATTCTGCTCAGGTGCCTCATTACAGTCAAGGTGGATATCCTCCAGCAAGTGCCTCTCAGACTCCACAGCCAACAACAGCTCCAAATCATATGGTTCGGAATCCGCAATTCATTCGTAACCATCCTTACAATGAGTTGATTGAGAAGTTGGTGAACATGGGTTTTAGGGGTGATCATGTTGCAAGTGTAATCCAGAGGATGGAGGAAAGTGGCCAAACCATCGATTTTAATGCTGTGATTGACAGGTTGAATGTACATTCATCTGGGGCTCCTCCTCAGAGAGGATGGTCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1421

Protein Analysis

495

Amino Acids

54.55

Weight (kDa)

6.39

Isoelectric Point (pI)

72.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1421 PF07223 439 - 483 4.5e-23 UBA-like domain (DUF1421)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 757
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 4 cut(s) 508, 523, 676, 1201
AccB7I CCANNNNNTGG 1 cut(s) 1387
AciI CCGC 3 cut(s) 653, 1029, 1292
AclWI GGATC 4 cut(s) 283, 367, 629, 642
AcoI YGGCCR 2 cut(s) 37, 1399
AcuI CTGAAG 2 cut(s) 66, 326
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 4 cut(s) 20, 830, 1150, 1443
AfiI CCNNNNNNNGG 7 cut(s) 673, 807, 989, 995, 1119, 1387, 1469
AgsI TTSAA 5 cut(s) 83, 128, 237, 266, 1438
AjnI CCWGG 4 cut(s) 844, 874, 988, 1141
AluBI AGCT 9 cut(s) 241, 340, 346, 401, 464, 580, 1034, 1091, 1268
AluI AGCT 9 cut(s) 241, 340, 346, 401, 464, 580, 1034, 1091, 1268
Alw21I GWGCWC 1 cut(s) 1093
Alw26I GTCTC 3 cut(s) 291, 311, 929
AlwI GGATC 4 cut(s) 283, 367, 629, 642
AlwNI CAGNNNCTG 1 cut(s) 292
AoxI GGCC 4 cut(s) 37, 809, 1121, 1399
ApeKI GCWGC 3 cut(s) 29, 796, 1054
Asp700I GAANNNNTTC 1 cut(s) 136
AspLEI GCGC 2 cut(s) 120, 526
AspS9I GGNCC 2 cut(s) 810, 1121
AsuHPI GGTGA 8 cut(s) 3, 203, 396, 868, 1112, 1118, 1351, 1370
BaeI ACNNNNGTAYC 2 cut(s) 812, 845
BalI TGGCCA 2 cut(s) 39, 1401
BamHI GGATCC 1 cut(s) 634
BanI GGYRCC 4 cut(s) 508, 523, 676, 1201
BanII GRGCYC 2 cut(s) 1093, 1459
BbsI GAAGAC 2 cut(s) 54, 434
Bbv12I GWGCWC 1 cut(s) 1093
BbvCI CCTCAGC 3 cut(s) 762, 984, 1065
BbvI GCAGC 3 cut(s) 16, 808, 1066
BccI CCATC 9 cut(s) 413, 486, 823, 910, 931, 1317, 1381, 1415, 1467
BceAI ACGGC 1 cut(s) 158
BcgI CGANNNNNNTGC 4 cut(s) 1283, 1317, 1400, 1434
BciT130I CCWGG 4 cut(s) 846, 876, 990, 1143
BciVI GTATCC 2 cut(s) 744, 786
BclI TGATCA 2 cut(s) 217, 1360
BcoDI GTCTC 3 cut(s) 291, 311, 929
BfaI CTAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 2 cut(s) 744, 786
BisI GCNGC 3 cut(s) 30, 797, 1055
BlsI GCNGC 3 cut(s) 31, 798, 1056
Bme1390I CCNGG 4 cut(s) 846, 876, 990, 1143
BmgT120I GGNCC 2 cut(s) 810, 1121
BmiI GGNNCC 7 cut(s) 510, 525, 636, 678, 812, 1203, 1458
BmrFI CCNGG 4 cut(s) 846, 876, 990, 1143
BmsI GCATC 4 cut(s) 186, 616, 997, 1093
BpiI GAAGAC 2 cut(s) 54, 434
BplI GAGNNNNNCTC 2 cut(s) 967, 999
BpmI CTGGAG 2 cut(s) 915, 1215
Bpu10I CCTNAGC 4 cut(s) 762, 984, 1065, 1197
BpuEI CTTGAG 3 cut(s) 227, 272, 681
Bsa29I ATCGAT 1 cut(s) 1410
BsaBI GATNNNNATC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 1141, 1142
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bsc4I CCNNNNNNNGG 7 cut(s) 673, 807, 989, 995, 1119, 1387, 1469
Bse1I ACTGG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 4 cut(s) 846, 876, 990, 1143
BseCI ATCGAT 1 cut(s) 1410
BseDI CCNNGG 2 cut(s) 1141, 1142
BseGI GGATG 4 cut(s) 607, 1309, 1392, 1478
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 7 cut(s) 673, 807, 989, 995, 1119, 1387, 1469
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 3 cut(s) 918, 1449, 1452
BseXI GCAGC 3 cut(s) 16, 808, 1066
BseYI CCCAGC 1 cut(s) 1118
BsgI GTGCAG 3 cut(s) 791, 815, 1116
BshFI GGCC 4 cut(s) 39, 811, 1123, 1401
BshNI GGYRCC 4 cut(s) 508, 523, 676, 1201
BshVI ATCGAT 1 cut(s) 1410
BsiHKAI GWGCWC 1 cut(s) 1093
BslI CCNNNNNNNGG 7 cut(s) 673, 807, 989, 995, 1119, 1387, 1469
BsmAI GTCTC 3 cut(s) 291, 311, 929
BsnI GGCC 4 cut(s) 39, 811, 1123, 1401
Bsp1286I GDGCHC 2 cut(s) 1093, 1459
Bsp1407I TGTACA 2 cut(s) 18, 1441
Bsp143I GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
BspACI CCGC 3 cut(s) 653, 1029, 1292
BspANI GGCC 4 cut(s) 39, 811, 1123, 1401
BspDI ATCGAT 1 cut(s) 1410
BspLI GGNNCC 7 cut(s) 510, 525, 636, 678, 812, 1203, 1458
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 4 cut(s) 283, 367, 629, 642
BspT107I GGYRCC 4 cut(s) 508, 523, 676, 1201
BsrGI TGTACA 2 cut(s) 18, 1441
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 1141, 1142
BssMI GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 4 cut(s) 846, 876, 990, 1143
Bst4CI ACNGT 6 cut(s) 18, 79, 153, 723, 756, 1214
BstACI GRCGYC 1 cut(s) 524
BstAUI TGTACA 2 cut(s) 18, 1441
BstC8I GCNNGC 3 cut(s) 41, 348, 953
BstENI CCTNNNNNAGG 1 cut(s) 1467
BstF5I GGATG 4 cut(s) 607, 1309, 1392, 1478
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 120, 526
BstKTI GATC 7 cut(s) 11, 220, 291, 362, 637, 1074, 1363
BstMAI GTCTC 3 cut(s) 291, 311, 929
BstMBI GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
BstMWI GCNNNNNNNGC 3 cut(s) 793, 1054, 1088
BstNI CCWGG 4 cut(s) 846, 876, 990, 1143
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 4 cut(s) 844, 874, 988, 1141
BstV1I GCAGC 3 cut(s) 16, 808, 1066
BstV2I GAAGAC 2 cut(s) 54, 434
BstX2I RGATCY 3 cut(s) 288, 359, 634
BstYI RGATCY 3 cut(s) 288, 359, 634
Bsu15I ATCGAT 1 cut(s) 1410
BsuI GTATCC 2 cut(s) 744, 786
BsuRI GGCC 4 cut(s) 39, 811, 1123, 1401
BsuTUI ATCGAT 1 cut(s) 1410
BtsCI GGATG 4 cut(s) 607, 1309, 1392, 1478
BtsIMutI CAGTG 3 cut(s) 14, 510, 798
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 41, 348, 953
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 2 cut(s) 120, 526
Cfr13I GGNCC 2 cut(s) 810, 1121
ClaI ATCGAT 1 cut(s) 1410
CsiI ACCWGGT 2 cut(s) 844, 874
Csp6I GTAC 4 cut(s) 19, 829, 1149, 1442
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviAII CATG 6 cut(s) 91, 115, 952, 1012, 1345, 1364
CviQI GTAC 4 cut(s) 19, 829, 1149, 1442
DinI GGCGCC 1 cut(s) 525
DpnI GATC 7 cut(s) 10, 219, 290, 361, 636, 1073, 1362
DpnII GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 37, 1399
Ecl136II GAGCTC 1 cut(s) 1091
Eco24I GRGCYC 2 cut(s) 1093, 1459
Eco32I GATATC 1 cut(s) 1226
Eco53kI GAGCTC 1 cut(s) 1091
Eco57I CTGAAG 2 cut(s) 66, 326
EcoICRI GAGCTC 1 cut(s) 1091
EcoNI CCTNNNNNAGG 1 cut(s) 1467
EcoO109I RGGNCCY 1 cut(s) 810
EcoRII CCWGG 4 cut(s) 844, 874, 988, 1141
EcoRV GATATC 1 cut(s) 1226
EcoT38I GRGCYC 2 cut(s) 1093, 1459
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
FaeI CATG 6 cut(s) 94, 118, 955, 1015, 1348, 1367
FatI CATG 6 cut(s) 90, 114, 951, 1011, 1344, 1363
FauI CCCGC 1 cut(s) 660
FauNDI CATATG 1 cut(s) 1278
FbaI TGATCA 2 cut(s) 217, 1360
Fnu4HI GCNGC 3 cut(s) 30, 797, 1055
FokI GGATG 3 cut(s) 594, 1296, 1399
FriOI GRGCYC 2 cut(s) 1093, 1459
Fsp4HI GCNGC 3 cut(s) 30, 797, 1055
FspBI CTAG 1 cut(s) 669
GlaI GCGC 2 cut(s) 119, 525
GluI GCNGC 3 cut(s) 30, 797, 1055
GsaI CCCAGC 1 cut(s) 1122
GsuI CTGGAG 2 cut(s) 915, 1215
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 4 cut(s) 39, 811, 1123, 1401
HhaI GCGC 2 cut(s) 120, 526
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 6 cut(s) 94, 118, 955, 1015, 1348, 1367
Hin6I GCGC 2 cut(s) 118, 524
HinP1I GCGC 2 cut(s) 118, 524
HincII GTYRAC 3 cut(s) 851, 881, 911
HindII GTYRAC 3 cut(s) 851, 881, 911
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 7 cut(s) 50, 233, 319, 616, 937, 1249, 1288
HphI GGTGA 8 cut(s) 3, 203, 396, 868, 1112, 1118, 1351, 1370
Hpy166II GTNNAC 8 cut(s) 21, 140, 829, 851, 859, 881, 911, 1342
Hpy188III TCNNGA 7 cut(s) 215, 251, 266, 286, 292, 932, 1381
Hpy8I GTNNAC 8 cut(s) 21, 140, 829, 851, 859, 881, 911, 1342
HpyAV CCTTC 2 cut(s) 122, 1166
HpyCH4III ACNGT 6 cut(s) 18, 79, 153, 723, 756, 1214
HpyCH4V TGCA 7 cut(s) 350, 661, 772, 796, 961, 1133, 1370
HpyF10VI GCNNNNNNNGC 3 cut(s) 793, 1054, 1088
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 6 cut(s) 94, 118, 955, 1015, 1348, 1367
HspAI GCGC 2 cut(s) 118, 524
KasI GGCGCC 1 cut(s) 523
Ksp22I TGATCA 2 cut(s) 217, 1360
Kzo9I GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
LmnI GCTCC 4 cut(s) 1031, 1088, 1273, 1462
Lsp1109I GCAGC 3 cut(s) 16, 808, 1066
LweI GCATC 4 cut(s) 186, 616, 997, 1093
MabI ACCWGGT 2 cut(s) 844, 874
MaeI CTAG 1 cut(s) 669
MaeIII GTNAC 3 cut(s) 147, 538, 1304
MalI GATC 7 cut(s) 10, 219, 290, 361, 636, 1073, 1362
MboI GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
MboII GAAGA 5 cut(s) 59, 254, 354, 357, 439
MflI RGATCY 3 cut(s) 288, 359, 634
MhlI GDGCHC 2 cut(s) 1093, 1459
MlsI TGGCCA 2 cut(s) 39, 1401
MluCI AATT 7 cut(s) 69, 132, 158, 329, 458, 743, 1295
MluNI TGGCCA 2 cut(s) 39, 1401
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 5 cut(s) 44, 313, 625, 931, 1243
MmeI TCCRAC 2 cut(s) 135, 742
Mox20I TGGCCA 2 cut(s) 39, 1401
MroXI GAANNNNTTC 1 cut(s) 136
MscI TGGCCA 2 cut(s) 39, 1401
MseI TTAA 2 cut(s) 209, 1416
MslI CAYNNNNRTG 1 cut(s) 956
Msp20I TGGCCA 2 cut(s) 39, 1401
MspR9I CCNGG 4 cut(s) 846, 876, 990, 1143
MvaI CCWGG 4 cut(s) 846, 876, 990, 1143
MwoI GCNNNNNNNGC 3 cut(s) 793, 1054, 1088
NarI GGCGCC 1 cut(s) 524
NdeI CATATG 1 cut(s) 1278
NdeII GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
NlaIII CATG 6 cut(s) 94, 118, 955, 1015, 1348, 1367
NlaIV GGNNCC 7 cut(s) 510, 525, 636, 678, 812, 1203, 1458
NmuCI GTSAC 2 cut(s) 147, 538
NspI RCATGY 1 cut(s) 955
PaeI GCATGC 1 cut(s) 955
PaqCI CACCTGC 1 cut(s) 757
PasI CCCWGGG 1 cut(s) 1142
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 233, 1288
PflMI CCANNNNNTGG 1 cut(s) 1387
PkrI GCNGC 3 cut(s) 31, 798, 1056
PleI GAGTC 5 cut(s) 44, 313, 624, 931, 1243
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 5 cut(s) 44, 313, 624, 931, 1243
Psp124BI GAGCTC 1 cut(s) 1093
Psp6I CCWGG 4 cut(s) 844, 874, 988, 1141
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 4 cut(s) 844, 874, 988, 1141
PspN4I GGNNCC 7 cut(s) 510, 525, 636, 678, 812, 1203, 1458
PspPI GGNCC 2 cut(s) 810, 1121
PsrI GAACNNNNNNTAC 4 cut(s) 851, 881, 883, 913
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 3 cut(s) 288, 359, 634
RsaI GTAC 4 cut(s) 20, 830, 1150, 1443
RsaNI GTAC 4 cut(s) 19, 829, 1149, 1442
RseI CAYNNNNRTG 1 cut(s) 956
SacI GAGCTC 1 cut(s) 1093
SaqAI TTAA 2 cut(s) 209, 1416
SatI GCNGC 3 cut(s) 30, 797, 1055
Sau3AI GATC 7 cut(s) 8, 217, 288, 359, 634, 1071, 1360
Sau96I GGNCC 2 cut(s) 810, 1121
SchI GAGTC 5 cut(s) 44, 313, 625, 931, 1243
ScrFI CCNGG 4 cut(s) 846, 876, 990, 1143
SduI GDGCHC 2 cut(s) 1093, 1459
SexAI ACCWGGT 2 cut(s) 844, 874
SfaNI GCATC 4 cut(s) 186, 616, 997, 1093
SfoI GGCGCC 1 cut(s) 525
SmiI ATTTAAAT 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 3 cut(s) 242, 251, 696
SmoI CTYRAG 3 cut(s) 242, 251, 696
SphI GCATGC 1 cut(s) 955
Sse9I AATT 7 cut(s) 69, 132, 158, 329, 458, 743, 1295
SsiI CCGC 3 cut(s) 653, 1029, 1292
SspDI GGCGCC 1 cut(s) 523
SspI AATATT 1 cut(s) 623
SspMI CTAG 1 cut(s) 669
SstI GAGCTC 1 cut(s) 1093
StyD4I CCNGG 4 cut(s) 844, 874, 988, 1141
SwaI ATTTAAAT 1 cut(s) 210
TaaI ACNGT 6 cut(s) 18, 79, 153, 723, 756, 1214
TaqI TCGA 3 cut(s) 646, 974, 1410
TasI AATT 7 cut(s) 69, 132, 158, 329, 458, 743, 1295
TatI WGTACW 3 cut(s) 18, 1148, 1441
TfiI GAWTC 2 cut(s) 233, 1288
Tru1I TTAA 2 cut(s) 209, 1416
Tru9I TTAA 2 cut(s) 209, 1416
TscAI CASTG 3 cut(s) 21, 510, 798
TseFI GTSAC 2 cut(s) 147, 538
TseI GCWGC 3 cut(s) 29, 796, 1054
Tsp45I GTSAC 2 cut(s) 147, 538
TspDTI ATGAA 4 cut(s) 107, 357, 1288, 1437
TspRI CASTG 3 cut(s) 21, 510, 798
Van91I CCANNNNNTGG 1 cut(s) 1387
XagI CCTNNNNNAGG 1 cut(s) 1467
XceI RCATGY 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.