DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66730 |
| fragaria_vesca | FvH4_1g29000 FvH4_1g29000 FvH4_1g29000 |
| malus_domestica | MD00G1054100.v1.1 |
| prunus_persica | Prupe.3G150300_v2.0.a1 |
| pyrus_communis | pycom17g25560 |
| rosa_chinensis | RchiOBHm_Chr3g0493691 RchiOBHm_Chr3g0493951 |
| rosa_laevigata | RLG00000022694 |
| rosa_roxburghii | Rroxscaffold_6G00391370 |
| rosa_rugosa | Rorug03G0263400 Rorug03G0263500 Rorug03G0263600 |
| rosa_samantha | Rh3AG312500 Rh3AG313200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 3759, 3885 |
| Acc36I | ACCTGC | 1 cut(s) | 2776 |
| AccB1I | GGYRCC | 1 cut(s) | 3898 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4004 |
| AccBSI | CCGCTC | 2 cut(s) | 299, 355 |
| AccII | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| AccIII | TCCGGA | 1 cut(s) | 3919 |
| AclWI | GGATC | 9 cut(s) | 1021, 1230, 1243, 1305, 1367, 1621, 1885, 2478, 3673 |
| AcoI | YGGCCR | 1 cut(s) | 881 |
| AcsI | RAATTY | 8 cut(s) | 533, 1541, 1722, 1783, 2731, 2794, 3087, 4008 |
| AcuI | CTGAAG | 6 cut(s) | 1715, 1946, 2358, 2834, 3275, 4098 |
| AcvI | CACGTG | 2 cut(s) | 1802, 4004 |
| AcyI | GRCGYC | 1 cut(s) | 3899 |
| AdeI | CACNNNGTG | 1 cut(s) | 1604 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 261, 262, 1118, 1289, 1628, 2013, 2493, 4004, 4110 |
| AflIII | ACRYGT | 2 cut(s) | 757, 847 |
| AjnI | CCWGG | 3 cut(s) | 1729, 2968, 3972 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 149, 181, 1615, 1647, 2119, 2151 |
| Alw21I | GWGCWC | 4 cut(s) | 321, 1341, 2390, 2645 |
| Alw26I | GTCTC | 7 cut(s) | 211, 869, 1304, 2358, 3645, 3846, 3966 |
| Alw44I | GTGCAC | 2 cut(s) | 1337, 2386 |
| AlwI | GGATC | 9 cut(s) | 1021, 1230, 1243, 1305, 1367, 1621, 1885, 2478, 3673 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2867 |
| Aor13HI | TCCGGA | 1 cut(s) | 3919 |
| AoxI | GGCC | 5 cut(s) | 3, 247, 881, 893, 1805 |
| ApaLI | GTGCAC | 2 cut(s) | 1337, 2386 |
| ApeKI | GCWGC | 6 cut(s) | 2000, 2368, 2402, 2864, 3977, 4088 |
| ApoI | RAATTY | 8 cut(s) | 533, 1541, 1722, 1783, 2731, 2794, 3087, 4008 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2585, 2617 |
| AseI | ATTAAT | 1 cut(s) | 3177 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1211, 3839 |
| AspLEI | GCGC | 5 cut(s) | 2044, 2244, 2246, 2682, 3901 |
| AspS9I | GGNCC | 2 cut(s) | 1280, 1805 |
| AsuC2I | CCSGG | 2 cut(s) | 417, 447 |
| AsuHPI | GGTGA | 6 cut(s) | 662, 1262, 2528, 2537, 2568, 3962 |
| AvaII | GGWCC | 1 cut(s) | 1280 |
| AxyI | CCTNAGG | 1 cut(s) | 2358 |
| BaeGI | GKGCMC | 3 cut(s) | 1341, 2390, 3085 |
| BalI | TGGCCA | 1 cut(s) | 883 |
| BamHI | GGATCC | 1 cut(s) | 1235 |
| BanI | GGYRCC | 1 cut(s) | 3898 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2811, 2843 |
| BbrPI | CACGTG | 2 cut(s) | 1802, 4004 |
| BbsI | GAAGAC | 3 cut(s) | 296, 2024, 3273 |
| Bbv12I | GWGCWC | 4 cut(s) | 321, 1341, 2390, 2645 |
| BbvCI | CCTCAGC | 1 cut(s) | 3894 |
| BbvI | GCAGC | 6 cut(s) | 1987, 2355, 2389, 2876, 3964, 4075 |
| BccI | CCATC | 9 cut(s) | 371, 1038, 1327, 1967, 3065, 3098, 3622, 4006, 4111 |
| BceAI | ACGGC | 2 cut(s) | 2217, 3965 |
| BciT130I | CCWGG | 3 cut(s) | 1731, 2970, 3974 |
| BciVI | GTATCC | 1 cut(s) | 1324 |
| BclI | TGATCA | 2 cut(s) | 1549, 3165 |
| BcnI | CCSGG | 2 cut(s) | 417, 447 |
| BcoDI | GTCTC | 7 cut(s) | 211, 869, 1304, 2358, 3645, 3846, 3966 |
| BfaI | CTAG | 4 cut(s) | 41, 627, 2522, 3215 |
| BfmI | CTRYAG | 2 cut(s) | 2211, 2403 |
| BfoI | RGCGCY | 2 cut(s) | 2045, 3902 |
| BfuAI | ACCTGC | 1 cut(s) | 2776 |
| BfuI | GTATCC | 1 cut(s) | 1324 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 192 |
| BglII | AGATCT | 3 cut(s) | 1474, 3160, 3858 |
| BmcAI | AGTACT | 1 cut(s) | 1660 |
| Bme1390I | CCNGG | 5 cut(s) | 417, 447, 1731, 2970, 3974 |
| Bme18I | GGWCC | 1 cut(s) | 1280 |
| BmgT120I | GGNCC | 2 cut(s) | 1280, 1805 |
| BmiI | GGNNCC | 4 cut(s) | 1237, 2231, 2967, 3900 |
| BmrFI | CCNGG | 5 cut(s) | 417, 447, 1731, 2970, 3974 |
| BmsI | GCATC | 8 cut(s) | 166, 538, 754, 2209, 2455, 3187, 3208, 3484 |
| BpiI | GAAGAC | 3 cut(s) | 296, 2024, 3273 |
| BpmI | CTGGAG | 3 cut(s) | 1889, 2248, 3870 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1489, 3894 |
| BpuEI | CTTGAG | 5 cut(s) | 1237, 1443, 2303, 2520, 2763 |
| BpuMI | CCSGG | 2 cut(s) | 417, 447 |
| BsaAI | YACGTR | 2 cut(s) | 1802, 4004 |
| BsaHI | GRCGYC | 1 cut(s) | 3899 |
| BsaJI | CCNNGG | 3 cut(s) | 1700, 2233, 3468 |
| BsaWI | WCCGGW | 1 cut(s) | 3919 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 261, 262, 1118, 1289, 1628, 2013, 2493, 4004, 4110 |
| Bse118I | RCCGGY | 1 cut(s) | 2544 |
| Bse1I | ACTGG | 6 cut(s) | 487, 970, 1821, 2463, 2650, 3507 |
| Bse21I | CCTNAGG | 1 cut(s) | 2358 |
| Bse3DI | GCAATG | 2 cut(s) | 2754, 4122 |
| BseAI | TCCGGA | 1 cut(s) | 3919 |
| BseBI | CCWGG | 3 cut(s) | 1731, 2970, 3974 |
| BseDI | CCNNGG | 3 cut(s) | 1700, 2233, 3468 |
| BseGI | GGATG | 9 cut(s) | 150, 553, 769, 832, 1132, 1891, 2293, 2368, 3994 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 261, 262, 1118, 1289, 1628, 2013, 2493, 4004, 4110 |
| BseMI | GCAATG | 2 cut(s) | 2754, 4122 |
| BseMII | CTCAG | 7 cut(s) | 1503, 2003, 2349, 3762, 3819, 3825, 3885 |
| BseNI | ACTGG | 6 cut(s) | 487, 970, 1821, 2463, 2650, 3507 |
| BsePI | GCGCGC | 1 cut(s) | 2242 |
| BseRI | GAGGAG | 3 cut(s) | 4, 7, 3550 |
| BseSI | GKGCMC | 3 cut(s) | 1341, 2390, 3085 |
| BseXI | GCAGC | 6 cut(s) | 1987, 2355, 2389, 2876, 3964, 4075 |
| BseYI | CCCAGC | 2 cut(s) | 102, 1178 |
| BsgI | GTGCAG | 1 cut(s) | 3966 |
| Bsh1236I | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| BshFI | GGCC | 5 cut(s) | 5, 249, 883, 895, 1807 |
| BshNI | GGYRCC | 1 cut(s) | 3898 |
| BsiHKAI | GWGCWC | 4 cut(s) | 321, 1341, 2390, 2645 |
| BsiSI | CCGG | 4 cut(s) | 416, 446, 2545, 3920 |
| BslFI | GGGAC | 3 cut(s) | 1511, 3149, 3674 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 261, 262, 1118, 1289, 1628, 2013, 2493, 4004, 4110 |
| BsmAI | GTCTC | 7 cut(s) | 211, 869, 1304, 2358, 3645, 3846, 3966 |
| BsmBI | CGTCTC | 1 cut(s) | 211 |
| BsmFI | GGGAC | 3 cut(s) | 1511, 3149, 3674 |
| BsmI | GAATGC | 1 cut(s) | 3551 |
| BsnI | GGCC | 5 cut(s) | 5, 249, 883, 895, 1807 |
| Bsp1286I | GDGCHC | 5 cut(s) | 321, 1341, 2390, 2645, 3085 |
| Bsp13I | TCCGGA | 1 cut(s) | 3919 |
| Bsp1407I | TGTACA | 3 cut(s) | 844, 2502, 2623 |
| Bsp68I | TCGCGA | 1 cut(s) | 2067 |
| BspANI | GGCC | 5 cut(s) | 5, 249, 883, 895, 1807 |
| BspCNI | CTCAG | 7 cut(s) | 1502, 2004, 2350, 3763, 3820, 3824, 3886 |
| BspEI | TCCGGA | 1 cut(s) | 3919 |
| BspFNI | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| BspHI | TCATGA | 3 cut(s) | 1546, 2790, 2815 |
| BspLI | GGNNCC | 4 cut(s) | 1237, 2231, 2967, 3900 |
| BspMAI | CTGCAG | 1 cut(s) | 2407 |
| BspMI | ACCTGC | 1 cut(s) | 2776 |
| BspPI | GGATC | 9 cut(s) | 1021, 1230, 1243, 1305, 1367, 1621, 1885, 2478, 3673 |
| BspT107I | GGYRCC | 1 cut(s) | 3898 |
| BsrBI | CCGCTC | 2 cut(s) | 299, 355 |
| BsrDI | GCAATG | 2 cut(s) | 2754, 4122 |
| BsrFI | RCCGGY | 1 cut(s) | 2544 |
| BsrGI | TGTACA | 3 cut(s) | 844, 2502, 2623 |
| BsrI | ACTGG | 6 cut(s) | 487, 970, 1821, 2463, 2650, 3507 |
| BssAI | RCCGGY | 1 cut(s) | 2544 |
| BssECI | CCNNGG | 3 cut(s) | 1700, 2233, 3468 |
| BssHII | GCGCGC | 1 cut(s) | 2242 |
| BssNI | GRCGYC | 1 cut(s) | 3899 |
| BssT1I | CCWWGG | 2 cut(s) | 1700, 3468 |
| Bst2UI | CCWGG | 3 cut(s) | 1731, 2970, 3974 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 334, 2950 |
| BstACI | GRCGYC | 1 cut(s) | 3899 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3494 |
| BstAUI | TGTACA | 3 cut(s) | 844, 2502, 2623 |
| BstBAI | YACGTR | 2 cut(s) | 1802, 4004 |
| BstDSI | CCRYGG | 1 cut(s) | 2233 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| BstF5I | GGATG | 9 cut(s) | 150, 553, 769, 832, 1132, 1891, 2293, 2368, 3994 |
| BstFNI | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| BstH2I | RGCGCY | 2 cut(s) | 2045, 3902 |
| BstHHI | GCGC | 5 cut(s) | 2044, 2244, 2246, 2682, 3901 |
| BstMAI | GTCTC | 7 cut(s) | 211, 869, 1304, 2358, 3645, 3846, 3966 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 192, 3494, 3792 |
| BstNI | CCWGG | 3 cut(s) | 1731, 2970, 3974 |
| BstNSI | RCATGY | 7 cut(s) | 761, 851, 1106, 1154, 2472, 2544, 3756 |
| BstSCI | CCNGG | 5 cut(s) | 415, 445, 1729, 2968, 3972 |
| BstSFI | CTRYAG | 2 cut(s) | 2211, 2403 |
| BstSLI | GKGCMC | 3 cut(s) | 1341, 2390, 3085 |
| BstUI | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| BstV1I | GCAGC | 6 cut(s) | 1987, 2355, 2389, 2876, 3964, 4075 |
| BstV2I | GAAGAC | 3 cut(s) | 296, 2024, 3273 |
| BstX2I | RGATCY | 5 cut(s) | 1026, 1235, 1474, 3160, 3858 |
| BstYI | RGATCY | 5 cut(s) | 1026, 1235, 1474, 3160, 3858 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2358 |
| BsuI | GTATCC | 1 cut(s) | 1324 |
| BsuRI | GGCC | 5 cut(s) | 5, 249, 883, 895, 1807 |
| BtgI | CCRYGG | 1 cut(s) | 2233 |
| BtgZI | GCGATG | 1 cut(s) | 4106 |
| BtsCI | GGATG | 9 cut(s) | 150, 553, 769, 832, 1132, 1891, 2293, 2368, 3994 |
| BtsI | GCAGTG | 3 cut(s) | 63, 372, 596 |
| BtuMI | TCGCGA | 1 cut(s) | 2067 |
| BveI | ACCTGC | 1 cut(s) | 2776 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2867 |
| CciI | TCATGA | 3 cut(s) | 1546, 2790, 2815 |
| CfoI | GCGC | 5 cut(s) | 2044, 2244, 2246, 2682, 3901 |
| Cfr10I | RCCGGY | 1 cut(s) | 2544 |
| Cfr13I | GGNCC | 2 cut(s) | 1280, 1805 |
| CseI | GACGC | 4 cut(s) | 410, 3608, 3775, 3784 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1228, 1263 |
| DinI | GGCGCC | 1 cut(s) | 3900 |
| DraI | TTTAAA | 1 cut(s) | 439 |
| DraIII | CACNNNGTG | 1 cut(s) | 1604 |
| EaeI | YGGCCR | 1 cut(s) | 881 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 334, 2950 |
| EarI | CTCTTC | 3 cut(s) | 62, 334, 2950 |
| Eco130I | CCWWGG | 2 cut(s) | 1700, 3468 |
| Eco147I | AGGCCT | 1 cut(s) | 895 |
| Eco32I | GATATC | 2 cut(s) | 2032, 3361 |
| Eco47I | GGWCC | 1 cut(s) | 1280 |
| Eco57I | CTGAAG | 6 cut(s) | 1715, 1946, 2358, 2834, 3275, 4098 |
| Eco72I | CACGTG | 2 cut(s) | 1802, 4004 |
| Eco81I | CCTNAGG | 1 cut(s) | 2358 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| EcoRI | GAATTC | 1 cut(s) | 2794 |
| EcoRII | CCWGG | 3 cut(s) | 1729, 2968, 3972 |
| EcoRV | GATATC | 2 cut(s) | 2032, 3361 |
| EcoT14I | CCWWGG | 2 cut(s) | 1700, 3468 |
| EcoT22I | ATGCAT | 3 cut(s) | 181, 2470, 3553 |
| EgeI | GGCGCC | 1 cut(s) | 3900 |
| EheI | GGCGCC | 1 cut(s) | 3900 |
| ErhI | CCWWGG | 2 cut(s) | 1700, 3468 |
| Esp3I | CGTCTC | 1 cut(s) | 211 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2832, 2864 |
| FaqI | GGGAC | 3 cut(s) | 1511, 3149, 3674 |
| FauI | CCCGC | 2 cut(s) | 59, 3281 |
| FauNDI | CATATG | 1 cut(s) | 1651 |
| FbaI | TGATCA | 2 cut(s) | 1549, 3165 |
| FokI | GGATG | 9 cut(s) | 137, 560, 776, 839, 1139, 1898, 2300, 2375, 3981 |
| FspBI | CTAG | 4 cut(s) | 41, 627, 2522, 3215 |
| GlaI | GCGC | 5 cut(s) | 2043, 2243, 2245, 2681, 3900 |
| GsaI | CCCAGC | 2 cut(s) | 106, 1182 |
| GsuI | CTGGAG | 3 cut(s) | 1889, 2248, 3870 |
| HaeII | RGCGCY | 2 cut(s) | 2045, 3902 |
| HaeIII | GGCC | 5 cut(s) | 5, 249, 883, 895, 1807 |
| HapII | CCGG | 4 cut(s) | 416, 446, 2545, 3920 |
| HgaI | GACGC | 4 cut(s) | 410, 3608, 3775, 3784 |
| HhaI | GCGC | 5 cut(s) | 2044, 2244, 2246, 2682, 3901 |
| Hin1I | GRCGYC | 1 cut(s) | 3899 |
| Hin6I | GCGC | 5 cut(s) | 2042, 2242, 2244, 2680, 3899 |
| HinP1I | GCGC | 5 cut(s) | 2042, 2242, 2244, 2680, 3899 |
| HincII | GTYRAC | 3 cut(s) | 3337, 3522, 3598 |
| HindII | GTYRAC | 3 cut(s) | 3337, 3522, 3598 |
| HindIII | AAGCTT | 2 cut(s) | 1136, 3045 |
| HpaI | GTTAAC | 1 cut(s) | 3522 |
| HpaII | CCGG | 4 cut(s) | 416, 446, 2545, 3920 |
| HphI | GGTGA | 6 cut(s) | 662, 1262, 2528, 2537, 2568, 3962 |
| Hpy99I | CGWCG | 3 cut(s) | 176, 362, 3520 |
| HpyCH4IV | ACGT | 8 cut(s) | 474, 1665, 1801, 2595, 3146, 3518, 4003, 4032 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 192, 3494, 3792 |
| HpySE526I | ACGT | 8 cut(s) | 474, 1665, 1801, 2595, 3146, 3518, 4003, 4032 |
| Hsp92I | GRCGYC | 1 cut(s) | 3899 |
| HspAI | GCGC | 5 cut(s) | 2042, 2242, 2244, 2680, 3899 |
| KasI | GGCGCC | 1 cut(s) | 3898 |
| Kpn2I | TCCGGA | 1 cut(s) | 3919 |
| KroI | GCCGGC | 1 cut(s) | 2544 |
| KroNI | GCCGGC | 1 cut(s) | 2546 |
| Ksp22I | TGATCA | 2 cut(s) | 1549, 3165 |
| KspAI | GTTAAC | 1 cut(s) | 3522 |
| LmnI | GCTCC | 9 cut(s) | 2229, 2251, 2422, 2640, 2744, 2822, 2859, 3297, 3698 |
| Lsp1109I | GCAGC | 6 cut(s) | 1987, 2355, 2389, 2876, 3964, 4075 |
| LweI | GCATC | 8 cut(s) | 166, 538, 754, 2209, 2455, 3187, 3208, 3484 |
| MaeI | CTAG | 4 cut(s) | 41, 627, 2522, 3215 |
| MaeII | ACGT | 8 cut(s) | 474, 1665, 1801, 2595, 3146, 3518, 4003, 4032 |
| MaeIII | GTNAC | 7 cut(s) | 989, 1250, 1453, 1604, 1636, 2446, 3202 |
| MbiI | CCGCTC | 2 cut(s) | 299, 355 |
| MfeI | CAATTG | 3 cut(s) | 259, 3234, 3693 |
| MflI | RGATCY | 5 cut(s) | 1026, 1235, 1474, 3160, 3858 |
| MhlI | GDGCHC | 5 cut(s) | 321, 1341, 2390, 2645, 3085 |
| MlsI | TGGCCA | 1 cut(s) | 883 |
| MluNI | TGGCCA | 1 cut(s) | 883 |
| Mly113I | GGCGCC | 1 cut(s) | 3899 |
| MlyI | GAGTC | 3 cut(s) | 1277, 1601, 3668 |
| MmeI | TCCRAC | 2 cut(s) | 950, 1296 |
| Mox20I | TGGCCA | 1 cut(s) | 883 |
| Mph1103I | ATGCAT | 3 cut(s) | 181, 2470, 3553 |
| MroI | TCCGGA | 1 cut(s) | 3919 |
| MroNI | GCCGGC | 1 cut(s) | 2544 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1211, 3839 |
| MscI | TGGCCA | 1 cut(s) | 883 |
| MslI | CAYNNNNRTG | 4 cut(s) | 762, 2415, 3711, 3830 |
| Msp20I | TGGCCA | 1 cut(s) | 883 |
| MspA1I | CMGCKG | 3 cut(s) | 2132, 2867, 3893 |
| MspI | CCGG | 4 cut(s) | 416, 446, 2545, 3920 |
| MspR9I | CCNGG | 5 cut(s) | 417, 447, 1731, 2970, 3974 |
| MunI | CAATTG | 3 cut(s) | 259, 3234, 3693 |
| Mva1269I | GAATGC | 1 cut(s) | 3551 |
| MvaI | CCWGG | 3 cut(s) | 1731, 2970, 3974 |
| MvnI | CGCG | 6 cut(s) | 404, 1533, 2067, 2244, 3288, 3795 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 192, 3494, 3792 |
| NaeI | GCCGGC | 1 cut(s) | 2546 |
| NarI | GGCGCC | 1 cut(s) | 3899 |
| NciI | CCSGG | 2 cut(s) | 417, 447 |
| NdeI | CATATG | 1 cut(s) | 1651 |
| NgoMIV | GCCGGC | 1 cut(s) | 2544 |
| NlaIV | GGNNCC | 4 cut(s) | 1237, 2231, 2967, 3900 |
| NmuCI | GTSAC | 5 cut(s) | 1250, 1453, 1604, 2446, 3202 |
| NruI | TCGCGA | 1 cut(s) | 2067 |
| NsiI | ATGCAT | 3 cut(s) | 181, 2470, 3553 |
| NspI | RCATGY | 7 cut(s) | 761, 851, 1106, 1154, 2472, 2544, 3756 |
| PaeI | GCATGC | 2 cut(s) | 1154, 2544 |
| PagI | TCATGA | 3 cut(s) | 1546, 2790, 2815 |
| PauI | GCGCGC | 1 cut(s) | 2242 |
| PceI | AGGCCT | 1 cut(s) | 895 |
| PciI | ACATGT | 2 cut(s) | 757, 847 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3409 |
| PctI | GAATGC | 1 cut(s) | 3551 |
| PdiI | GCCGGC | 1 cut(s) | 2546 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1211, 3839 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4004 |
| PfoI | TCCNGGA | 2 cut(s) | 1729, 2968 |
| PleI | GAGTC | 3 cut(s) | 1276, 1601, 3668 |
| PluTI | GGCGCC | 1 cut(s) | 3902 |
| PmaCI | CACGTG | 2 cut(s) | 1802, 4004 |
| PmlI | CACGTG | 2 cut(s) | 1802, 4004 |
| PpsI | GAGTC | 3 cut(s) | 1276, 1601, 3668 |
| Ppu21I | YACGTR | 2 cut(s) | 1802, 4004 |
| PscI | ACATGT | 2 cut(s) | 757, 847 |
| PshBI | ATTAAT | 1 cut(s) | 3177 |
| PsiI | TTATAA | 2 cut(s) | 3759, 3885 |
| Psp6I | CCWGG | 3 cut(s) | 1729, 2968, 3972 |
| PspCI | CACGTG | 2 cut(s) | 1802, 4004 |
| PspFI | CCCAGC | 2 cut(s) | 102, 1178 |
| PspGI | CCWGG | 3 cut(s) | 1729, 2968, 3972 |
| PspN4I | GGNNCC | 4 cut(s) | 1237, 2231, 2967, 3900 |
| PspPI | GGNCC | 2 cut(s) | 1280, 1805 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3975, 4007 |
| PstI | CTGCAG | 1 cut(s) | 2407 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2867 |
| PsuI | RGATCY | 5 cut(s) | 1026, 1235, 1474, 3160, 3858 |
| PteI | GCGCGC | 1 cut(s) | 2242 |
| PvuII | CAGCTG | 2 cut(s) | 2132, 2867 |
| RruI | TCGCGA | 1 cut(s) | 2067 |
| RseI | CAYNNNNRTG | 4 cut(s) | 762, 2415, 3711, 3830 |
| Sau96I | GGNCC | 2 cut(s) | 1280, 1805 |
| ScaI | AGTACT | 1 cut(s) | 1660 |
| SchI | GAGTC | 3 cut(s) | 1277, 1601, 3668 |
| ScrFI | CCNGG | 5 cut(s) | 417, 447, 1731, 2970, 3974 |
| SduI | GDGCHC | 5 cut(s) | 321, 1341, 2390, 2645, 3085 |
| SfaNI | GCATC | 8 cut(s) | 166, 538, 754, 2209, 2455, 3187, 3208, 3484 |
| SfcI | CTRYAG | 2 cut(s) | 2211, 2403 |
| SfoI | GGCGCC | 1 cut(s) | 3900 |
| SinI | GGWCC | 1 cut(s) | 1280 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 762, 2415, 3711, 3830 |
| SmlI | CTYRAG | 5 cut(s) | 1216, 1458, 2282, 2535, 2778 |
| SmoI | CTYRAG | 5 cut(s) | 1216, 1458, 2282, 2535, 2778 |
| SphI | GCATGC | 2 cut(s) | 1154, 2544 |
| SseBI | AGGCCT | 1 cut(s) | 895 |
| SspDI | GGCGCC | 1 cut(s) | 3898 |
| SspI | AATATT | 1 cut(s) | 3419 |
| SspMI | CTAG | 4 cut(s) | 41, 627, 2522, 3215 |
| StuI | AGGCCT | 1 cut(s) | 895 |
| StyD4I | CCNGG | 5 cut(s) | 415, 445, 1729, 2968, 3972 |
| StyI | CCWWGG | 2 cut(s) | 1700, 3468 |
| TaiI | ACGT | 8 cut(s) | 477, 1668, 1804, 2598, 3149, 3521, 4006, 4035 |
| TaqI | TCGA | 9 cut(s) | 174, 357, 506, 769, 1188, 2650, 2874, 3483, 3543 |
| TatI | WGTACW | 6 cut(s) | 754, 844, 1658, 2502, 2623, 2887 |
| TauI | GCSGC | 4 cut(s) | 249, 355, 1918, 3795 |
| TseFI | GTSAC | 5 cut(s) | 1250, 1453, 1604, 2446, 3202 |
| TseI | GCWGC | 6 cut(s) | 2000, 2368, 2402, 2864, 3977, 4088 |
| Tsp45I | GTSAC | 5 cut(s) | 1250, 1453, 1604, 2446, 3202 |
| TspGWI | ACGGA | 5 cut(s) | 160, 193, 816, 836, 3418 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4004 |
| VneI | GTGCAC | 2 cut(s) | 1337, 2386 |
| VpaK11BI | GGWCC | 1 cut(s) | 1280 |
| VspI | ATTAAT | 1 cut(s) | 3177 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| XapI | RAATTY | 8 cut(s) | 533, 1541, 1722, 1783, 2731, 2794, 3087, 4008 |
| XceI | RCATGY | 7 cut(s) | 761, 851, 1106, 1154, 2472, 2544, 3756 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2902, 3699 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1211, 3839 |
| XspI | CTAG | 4 cut(s) | 41, 627, 2522, 3215 |
| ZrmI | AGTACT | 1 cut(s) | 1660 |
| Zsp2I | ATGCAT | 3 cut(s) | 181, 2470, 3553 |