DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66730 |
| fragaria_vesca | FvH4_1g29000 FvH4_1g29000 FvH4_1g29000 |
| malus_domestica | MD00G1054100.v1.1 |
| prunus_persica | Prupe.3G150300_v2.0.a1 |
| pyrus_communis | pycom17g25560 |
| rosa_chinensis | RchiOBHm_Chr3g0493691 RchiOBHm_Chr3g0493951 |
| rosa_laevigata | RLG00000022694 |
| rosa_roxburghii | Rroxscaffold_6G00391370 |
| rosa_rugosa | Rorug03G0263400 Rorug03G0263500 Rorug03G0263600 |
| rosa_samantha | Rh3AG312500 Rh3AG313200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 58 |
| AciI | CCGC | 3 cut(s) | 56, 248, 357 |
| AclWI | GGATC | 1 cut(s) | 118 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfaI | GTAC | 1 cut(s) | 31 |
| AgsI | TTSAA | 2 cut(s) | 158, 277 |
| AluBI | AGCT | 3 cut(s) | 189, 391, 416 |
| AluI | AGCT | 3 cut(s) | 189, 391, 416 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| AlwI | GGATC | 1 cut(s) | 118 |
| ApeKI | GCWGC | 4 cut(s) | 89, 92, 245, 388 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| AsuC2I | CCSGG | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 1 cut(s) | 328 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BbvI | GCAGC | 4 cut(s) | 76, 79, 257, 400 |
| BccI | CCATC | 2 cut(s) | 307, 313 |
| BclI | TGATCA | 1 cut(s) | 43 |
| BcnI | CCSGG | 1 cut(s) | 62 |
| BfmI | CTRYAG | 1 cut(s) | 386 |
| BisI | GCNGC | 4 cut(s) | 90, 93, 246, 389 |
| BlsI | GCNGC | 4 cut(s) | 91, 94, 247, 390 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmsI | GCATC | 3 cut(s) | 31, 83, 133 |
| Bpu10I | CCTNAGC | 2 cut(s) | 96, 255 |
| BpuMI | CCSGG | 1 cut(s) | 62 |
| BsaWI | WCCGGW | 1 cut(s) | 191 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 375, 405 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| Bse3DI | GCAATG | 2 cut(s) | 217, 267 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseMI | GCAATG | 2 cut(s) | 217, 267 |
| BseMII | CTCAG | 2 cut(s) | 110, 269 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseXI | GCAGC | 4 cut(s) | 76, 79, 257, 400 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BsiSI | CCGG | 2 cut(s) | 62, 192 |
| Bsp1286I | GDGCHC | 1 cut(s) | 364 |
| Bsp143I | GATC | 2 cut(s) | 43, 110 |
| BspACI | CCGC | 3 cut(s) | 56, 248, 357 |
| BspCNI | CTCAG | 2 cut(s) | 109, 268 |
| BspMAI | CTGCAG | 1 cut(s) | 390 |
| BspPI | GGATC | 1 cut(s) | 118 |
| BsrBI | CCGCTC | 1 cut(s) | 58 |
| BsrDI | GCAATG | 2 cut(s) | 217, 267 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssMI | GATC | 2 cut(s) | 43, 110 |
| Bst6I | CTCTTC | 3 cut(s) | 154, 204, 300 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 71, 89, 212 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 3 cut(s) | 96, 255, 417 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 2 cut(s) | 46, 113 |
| BstMBI | GATC | 2 cut(s) | 43, 110 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 71, 80, 89, 212, 236, 245, 251 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstSFI | CTRYAG | 1 cut(s) | 386 |
| BstV1I | GCAGC | 4 cut(s) | 76, 79, 257, 400 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| Csp6I | GTAC | 1 cut(s) | 30 |
| CviAII | CATG | 2 cut(s) | 47, 354 |
| CviJI | RGCY | 5 cut(s) | 170, 189, 254, 391, 416 |
| CviKI_1 | RGCY | 5 cut(s) | 170, 189, 254, 391, 416 |
| CviQI | GTAC | 1 cut(s) | 30 |
| DdeI | CTNAG | 3 cut(s) | 96, 255, 417 |
| DpnI | GATC | 2 cut(s) | 45, 112 |
| DpnII | GATC | 2 cut(s) | 43, 110 |
| Eam1104I | CTCTTC | 3 cut(s) | 154, 204, 300 |
| EarI | CTCTTC | 3 cut(s) | 154, 204, 300 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| FaeI | CATG | 2 cut(s) | 50, 357 |
| FatI | CATG | 2 cut(s) | 46, 353 |
| FauNDI | CATATG | 1 cut(s) | 309 |
| FbaI | TGATCA | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 4 cut(s) | 90, 93, 246, 389 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 4 cut(s) | 90, 93, 246, 389 |
| GluI | GCNGC | 4 cut(s) | 90, 93, 246, 389 |
| HapII | CCGG | 2 cut(s) | 62, 192 |
| Hin1II | CATG | 2 cut(s) | 50, 357 |
| HinfI | GANTC | 1 cut(s) | 332 |
| HpaII | CCGG | 2 cut(s) | 62, 192 |
| HphI | GGTGA | 1 cut(s) | 328 |
| Hpy166II | GTNNAC | 1 cut(s) | 378 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 182, 411 |
| Hpy8I | GTNNAC | 1 cut(s) | 378 |
| HpyAV | CCTTC | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 4 cut(s) | 74, 206, 245, 388 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 71, 80, 89, 212, 236, 245, 251 |
| HpyF3I | CTNAG | 3 cut(s) | 96, 255, 417 |
| Hsp92II | CATG | 2 cut(s) | 50, 357 |
| Ksp22I | TGATCA | 1 cut(s) | 43 |
| Kzo9I | GATC | 2 cut(s) | 43, 110 |
| LmnI | GCTCC | 5 cut(s) | 19, 63, 194, 367, 396 |
| LpnPI | CCDG | 7 cut(s) | 75, 83, 92, 192, 205, 242, 366 |
| Lsp1109I | GCAGC | 4 cut(s) | 76, 79, 257, 400 |
| LweI | GCATC | 3 cut(s) | 31, 83, 133 |
| MalI | GATC | 2 cut(s) | 45, 112 |
| MbiI | CCGCTC | 1 cut(s) | 58 |
| MboI | GATC | 2 cut(s) | 43, 110 |
| MboII | GAAGA | 5 cut(s) | 141, 191, 287, 340, 362 |
| MfeI | CAATTG | 2 cut(s) | 66, 240 |
| MhlI | GDGCHC | 1 cut(s) | 364 |
| MluCI | AATT | 5 cut(s) | 66, 119, 124, 240, 366 |
| MnlI | CCTC | 2 cut(s) | 157, 244 |
| MseI | TTAA | 1 cut(s) | 123 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MspI | CCGG | 2 cut(s) | 62, 192 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MunI | CAATTG | 2 cut(s) | 66, 240 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 71, 80, 89, 212, 236, 245, 251 |
| NciI | CCSGG | 1 cut(s) | 62 |
| NdeI | CATATG | 1 cut(s) | 309 |
| NdeII | GATC | 2 cut(s) | 43, 110 |
| NlaIII | CATG | 2 cut(s) | 50, 357 |
| PfeI | GAWTC | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 91, 94, 247, 390 |
| PstI | CTGCAG | 1 cut(s) | 390 |
| RsaI | GTAC | 1 cut(s) | 31 |
| RsaNI | GTAC | 1 cut(s) | 30 |
| SaqAI | TTAA | 1 cut(s) | 123 |
| SatI | GCNGC | 4 cut(s) | 90, 93, 246, 389 |
| Sau3AI | GATC | 2 cut(s) | 43, 110 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SduI | GDGCHC | 1 cut(s) | 364 |
| SetI | ASST | 4 cut(s) | 191, 274, 393, 418 |
| SfaNI | GCATC | 3 cut(s) | 31, 83, 133 |
| SfcI | CTRYAG | 1 cut(s) | 386 |
| Sse9I | AATT | 5 cut(s) | 66, 119, 124, 240, 366 |
| SsiI | CCGC | 3 cut(s) | 56, 248, 357 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| TasI | AATT | 5 cut(s) | 66, 119, 124, 240, 366 |
| TatI | WGTACW | 1 cut(s) | 29 |
| TfiI | GAWTC | 1 cut(s) | 332 |
| Tru1I | TTAA | 1 cut(s) | 123 |
| Tru9I | TTAA | 1 cut(s) | 123 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseI | GCWGC | 4 cut(s) | 89, 92, 245, 388 |
| TspDTI | ATGAA | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 385 |
| XapI | RAATTY | 1 cut(s) | 119 |