Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005059

Physical Location & Seq

Genomic Coordinates Forward (+)

18410880 .. 18417241

Gene Structure 6362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G165000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAGGAGAGAGCAAAGTGCTTGGCATTGCTCGGAGCCGGAGCTCTGCTAGGCTCGGTTTCCACCATCTTTCTATTGAAGCTTCGAGCAAGACGGACTGTGAAACAATGTGATGAAAAGGGAGTTGAATTGAATATTACTGGGAATGGAAATAGTAGGATGGCTGGTCTGGACCTTCTAAGTGATGAGATAGTTTCTGAACAATTAAAGAGGAACATTCAATTCTTTGGACTTGAGCCTCAACAAAAAGTGACTGCATCCTATGTTGTGGTCATTGGTCTTGGTGGAGTTGGAAGTCATGCTGCATCTATGCTTTTGCGATCAGGGATTGGCAAGCTCCTCCTTGTGGACTTTGATCAGGTATCAGTTTCATCACTCAATCGACATGCTGTTGCAACAAGAGCAGATGTTGGTATCCCAAAAGCACAGTGTCTGAAAGAGCATTTCTTGTCAATATTCCCAGAGTGCCAGATAGAAGCAAAAGTTCTATTATACGATGCTTCAACAGAAGAGGAAATTCTTTCAGGTCATCCTGATTTTGTTTTAGACTGTATTGATAACATTGATACAAAGGTGGCACTTCTTGCTGCGTGTGTACGTAGGGGTTTGAAGGTCCTATCGGCAACGGGAGCTGGTGCTAGAGCTGACCCCACCAGAATACGCATTGCGGATTTAAGACAATCAACAAATGACCCGTTATCACGAGCTGTAAGACACCGTTTGAGGAGGGATCATGGCATTGAAGGTGGCGTTACTGTTGTATTTTCATTAGAGAAACCTAAGGCAAAGCTTCTTCCATTTAAAGGACCAAGTGGAGAAGAAGAAAACCCTTCAGATTATCAGATACTACCGGGGTTTAGGGTTCGCATAATACCTGTTCTGGGTACCATCCCTGCAATATTTGGACAGGTCATGGCCTCCTATGTTTTGACACAACTGGCAGGATTGCAAGTTCAAACGGAACCTATTGTAAATTTGGATATTGACCATTACCGGATGCTTCACCAACGCCTTATTGAGCATGAGGAGTCATTGTACGGCACTGCCTTGCAAGTCCAGGTAGATGTTGAGGAAGTGATGTTTGTTGTAAAAGAGTTGTGGCATGGAAGAAGTGCAAGAGAACCGTTTGCTAAAGATGTTGGGCGTGGTATGTGGCGATCGGTAAATGAGTTGATGCTTGTGAGGTGGGACCAGGAAAAGCCGGCATCTGTGGCCAACCTAATTCTTTTGAAATTTAAAGAGGCACAAGAACATGAATTGAGGGTGCTTGAGGATATTAAAGAAAGAGAACCAGAATATTTTGTTAGAGTGACATCTATTCTGAAGCGGGCTGAACTAGAATTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

451

Amino Acids

50.01

Weight (kDa)

6.45

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37530 AT5G37530
fragaria_vesca	FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991
malus_domestica	MD09G1267400.v1.1
prunus_persica	Prupe.3G165000_v2.0.a1 Prupe.3G165000_v2.0.a1
pyrus_communis	pycom09g18020 pycom09g18030
rosa_chinensis	RchiOBHm_Chr3g0492321
rosa_laevigata	RLG00000022783
rosa_multiflora	Rmu_sc0002530.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392430
rosa_rugosa	Rorug03G0253100 Rorug03G0253200
rosa_samantha	Rh3AG303100 Rh3BG339100 Rh3CG336300 Rh3DG338300
rosa_wichuraiana	Rw3G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	1 cut(s)	884
AciI	CCGC	2 cut(s)	668, 1327
AclWI	GGATC	1 cut(s)	738
AcoI	YGGCCR	1 cut(s)	1212
AcsI	RAATTY	4 cut(s)	516, 973, 1232, 1340
AcuI	CTGAAG	2 cut(s)	816, 1343
AfaI	GTAC	3 cut(s)	597, 886, 1037
AfiI	CCNNNNNNNGG	3 cut(s)	346, 803, 881
AgsI	TTSAA	9 cut(s)	79, 128, 133, 221, 504, 610, 743, 956, 1231
AjnI	CCWGG	2 cut(s)	1056, 1191
AjuI	GAANNNNNNNTTGG	1 cut(s)	1326
AloI	GAACNNNNNNTCC	2 cut(s)	936, 968
AluBI	AGCT	7 cut(s)	44, 82, 337, 632, 644, 707, 790
AluI	AGCT	7 cut(s)	44, 82, 337, 632, 644, 707, 790
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	738
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	915, 1212
ApeKI	GCWGC	2 cut(s)	302, 587
ApoI	RAATTY	4 cut(s)	516, 973, 1232, 1340
Asp718I	GGTACC	1 cut(s)	884
AspS9I	GGNCC	4 cut(s)	172, 613, 806, 1189
AsuC2I	CCSGG	1 cut(s)	852
AsuHPI	GGTGA	1 cut(s)	995
AvaII	GGWCC	4 cut(s)	172, 613, 806, 1189
AxyI	CCTNAGG	1 cut(s)	780
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BalI	TGGCCA	1 cut(s)	1214
BanI	GGYRCC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	289, 574
BccI	CCATC	3 cut(s)	74, 154, 896
BceAI	ACGGC	1 cut(s)	1054
BciT130I	CCWGG	2 cut(s)	1058, 1193
BciVI	GTATCC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	852
BfaI	CTAG	3 cut(s)	50, 639, 1337
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	303, 588
BlsI	GCNGC	2 cut(s)	304, 589
Bme1390I	CCNGG	3 cut(s)	852, 1058, 1193
Bme18I	GGWCC	4 cut(s)	172, 613, 806, 1189
BmgT120I	GGNCC	4 cut(s)	172, 613, 806, 1189
BmiI	GGNNCC	4 cut(s)	37, 886, 963, 1190
BmrFI	CCNGG	3 cut(s)	852, 1058, 1193
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	6 cut(s)	266, 314, 487, 987, 1164, 1214
BmuI	ACTGGG	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	254, 1289
BpuMI	CCSGG	1 cut(s)	852
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	851
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	2 cut(s)	1019, 1049
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 803, 881
Bse118I	RCCGGY	1 cut(s)	1201
Bse1I	ACTGG	2 cut(s)	145, 942
Bse21I	CCTNAGG	1 cut(s)	780
Bse3DI	GCAATG	2 cut(s)	26, 663
BseBI	CCWGG	2 cut(s)	1058, 1193
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	5 cut(s)	165, 257, 529, 888, 1002
BseLI	CCNNNNNNNGG	3 cut(s)	346, 803, 881
BseMI	GCAATG	2 cut(s)	26, 663
BseNI	ACTGG	2 cut(s)	145, 942
BseRI	GAGGAG	4 cut(s)	20, 329, 739, 1040
BseXI	GCAGC	2 cut(s)	289, 574
Bsh1285I	CGRYCG	1 cut(s)	1160
BshFI	GGCC	2 cut(s)	917, 1214
BshNI	GGYRCC	1 cut(s)	884
BsiEI	CGRYCG	1 cut(s)	1160
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	4 cut(s)	39, 851, 994, 1202
BslFI	GGGAC	1 cut(s)	1202
BslI	CCNNNNNNNGG	3 cut(s)	346, 803, 881
BsmFI	GGGAC	1 cut(s)	1202
BsnI	GGCC	2 cut(s)	917, 1214
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	320, 355, 730, 1157
BspACI	CCGC	2 cut(s)	668, 1327
BspANI	GGCC	2 cut(s)	917, 1214
BspLI	GGNNCC	4 cut(s)	37, 886, 963, 1190
BspPI	GGATC	1 cut(s)	738
BspT107I	GGYRCC	1 cut(s)	884
BsrDI	GCAATG	2 cut(s)	26, 663
BsrFI	RCCGGY	1 cut(s)	1201
BsrI	ACTGG	2 cut(s)	145, 942
BssAI	RCCGGY	1 cut(s)	1201
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	4 cut(s)	320, 355, 730, 1157
BssSI	CACGAG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	1058, 1193
Bst4CI	ACNGT	6 cut(s)	100, 429, 551, 719, 757, 1125
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	335, 1203, 1329
BstDEI	CTNAG	2 cut(s)	179, 780
BstF5I	GGATG	5 cut(s)	165, 257, 529, 888, 1002
BstKTI	GATC	4 cut(s)	323, 358, 733, 1160
BstMBI	GATC	4 cut(s)	320, 355, 730, 1157
BstMCI	CGRYCG	1 cut(s)	1160
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 584, 629, 1211
BstNI	CCWGG	2 cut(s)	1058, 1193
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	850, 1056, 1191
BstSNI	TACGTA	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	289, 574
Bsu36I	CCTNAGG	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	917, 1214
BtsCI	GGATG	5 cut(s)	165, 257, 529, 888, 1002
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	2 cut(s)	434, 1041
Cac8I	GCNNGC	3 cut(s)	335, 1203, 1329
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	1201
Cfr13I	GGNCC	4 cut(s)	172, 613, 806, 1189
Csp6I	GTAC	3 cut(s)	596, 885, 1036
CviAII	CATG	7 cut(s)	299, 386, 734, 913, 1022, 1103, 1253
CviQI	GTAC	3 cut(s)	596, 885, 1036
DdeI	CTNAG	2 cut(s)	179, 780
DpnI	GATC	4 cut(s)	322, 357, 732, 1159
DpnII	GATC	4 cut(s)	320, 355, 730, 1157
DraI	TTTAAA	2 cut(s)	802, 1237
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	44
Eco105I	TACGTA	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	4 cut(s)	172, 613, 806, 1189
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	816, 1343
Eco81I	CCTNAGG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	1056, 1191
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	7 cut(s)	302, 389, 737, 916, 1025, 1106, 1256
FaqI	GGGAC	1 cut(s)	1202
FatI	CATG	7 cut(s)	298, 385, 733, 912, 1021, 1102, 1252
FauI	CCCGC	1 cut(s)	1320
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	303, 588
FokI	GGATG	5 cut(s)	172, 244, 516, 875, 1009
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	303, 588
FspBI	CTAG	3 cut(s)	50, 639, 1337
GluI	GCNGC	2 cut(s)	303, 588
HaeIII	GGCC	2 cut(s)	917, 1214
HapII	CCGG	4 cut(s)	39, 851, 994, 1202
Hin1II	CATG	7 cut(s)	302, 389, 737, 916, 1025, 1106, 1256
HindIII	AAGCTT	2 cut(s)	80, 788
HinfI	GANTC	1 cut(s)	1028
HpaII	CCGG	4 cut(s)	39, 851, 994, 1202
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	2 cut(s)	349, 596
Hpy188I	TCNGA	6 cut(s)	35, 199, 435, 835, 843, 1323
Hpy188III	TCNNGA	3 cut(s)	170, 533, 702
Hpy8I	GTNNAC	2 cut(s)	349, 596
HpyAV	CCTTC	4 cut(s)	185, 604, 737, 840
HpyCH4III	ACNGT	6 cut(s)	100, 429, 551, 719, 757, 1125
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	7 cut(s)	257, 305, 395, 896, 949, 1051, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 584, 629, 1211
HpyF3I	CTNAG	2 cut(s)	179, 780
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	7 cut(s)	302, 389, 737, 916, 1025, 1106, 1256
KpnI	GGTACC	1 cut(s)	888
KroI	GCCGGC	1 cut(s)	1201
KroNI	GCCGGC	1 cut(s)	1203
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	320, 355, 730, 1157
LmnI	GCTCC	4 cut(s)	35, 41, 342, 629
Lsp1109I	GCAGC	2 cut(s)	289, 574
LweI	GCATC	6 cut(s)	266, 314, 487, 987, 1164, 1214
MaeI	CTAG	3 cut(s)	50, 639, 1337
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	3 cut(s)	250, 751, 1309
MalI	GATC	4 cut(s)	322, 357, 732, 1159
MboI	GATC	4 cut(s)	320, 355, 730, 1157
MboII	GAAGA	5 cut(s)	521, 785, 830, 833, 1119
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	1214
MluCI	AATT	9 cut(s)	128, 203, 221, 516, 973, 1221, 1232, 1256, 1340
MluNI	TGGCCA	1 cut(s)	1214
MlyI	GAGTC	1 cut(s)	1037
MmeI	TCCRAC	1 cut(s)	271
Mox20I	TGGCCA	1 cut(s)	1214
MroNI	GCCGGC	1 cut(s)	1201
MscI	TGGCCA	1 cut(s)	1214
MseI	TTAA	5 cut(s)	206, 674, 801, 1236, 1278
Msp20I	TGGCCA	1 cut(s)	1214
MspI	CCGG	4 cut(s)	39, 851, 994, 1202
MspR9I	CCNGG	3 cut(s)	852, 1058, 1193
MvaI	CCWGG	2 cut(s)	1058, 1193
MwoI	GCNNNNNNNGC	4 cut(s)	401, 584, 629, 1211
NaeI	GCCGGC	1 cut(s)	1203
NciI	CCSGG	1 cut(s)	852
NdeII	GATC	4 cut(s)	320, 355, 730, 1157
NgoMIV	GCCGGC	1 cut(s)	1201
NlaIII	CATG	7 cut(s)	302, 389, 737, 916, 1025, 1106, 1256
NlaIV	GGNNCC	4 cut(s)	37, 886, 963, 1190
NmuCI	GTSAC	2 cut(s)	250, 1309
NspI	RCATGY	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	1203
PkrI	GCNGC	2 cut(s)	304, 589
Ple19I	CGATCG	1 cut(s)	1160
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	613
Psp124BI	GAGCTC	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	1056, 1191
PspGI	CCWGG	2 cut(s)	1056, 1191
PspN4I	GGNNCC	4 cut(s)	37, 886, 963, 1190
PspPI	GGNCC	4 cut(s)	172, 613, 806, 1189
PspPPI	RGGWCCY	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	1160
RsaI	GTAC	3 cut(s)	597, 886, 1037
RsaNI	GTAC	3 cut(s)	596, 885, 1036
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	206, 674, 801, 1236, 1278
SatI	GCNGC	2 cut(s)	303, 588
Sau3AI	GATC	4 cut(s)	320, 355, 730, 1157
Sau96I	GGNCC	4 cut(s)	172, 613, 806, 1189
SchI	GAGTC	1 cut(s)	1037
ScrFI	CCNGG	3 cut(s)	852, 1058, 1193
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	6 cut(s)	266, 314, 487, 987, 1164, 1214
SinI	GGWCC	4 cut(s)	172, 613, 806, 1189
SmlI	CTYRAG	2 cut(s)	233, 1268
SmoI	CTYRAG	2 cut(s)	233, 1268
SnaBI	TACGTA	1 cut(s)	599
Sse9I	AATT	9 cut(s)	128, 203, 221, 516, 973, 1221, 1232, 1256, 1340
SsiI	CCGC	2 cut(s)	668, 1327
SspI	AATATT	4 cut(s)	136, 456, 900, 1298
SspMI	CTAG	3 cut(s)	50, 639, 1337
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	3 cut(s)	850, 1056, 1191
TaaI	ACNGT	6 cut(s)	100, 429, 551, 719, 757, 1125
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	2 cut(s)	85, 382
TasI	AATT	9 cut(s)	128, 203, 221, 516, 973, 1221, 1232, 1256, 1340
Tru1I	TTAA	5 cut(s)	206, 674, 801, 1236, 1278
Tru9I	TTAA	5 cut(s)	206, 674, 801, 1236, 1278
TscAI	CASTG	2 cut(s)	434, 1048
TseFI	GTSAC	2 cut(s)	250, 1309
TseI	GCWGC	2 cut(s)	302, 587
Tsp45I	GTSAC	2 cut(s)	250, 1309
TspDTI	ATGAA	4 cut(s)	129, 360, 756, 1269
TspGWI	ACGGA	2 cut(s)	109, 974
TspRI	CASTG	2 cut(s)	434, 1048
VpaK11BI	GGWCC	4 cut(s)	172, 613, 806, 1189
XapI	RAATTY	4 cut(s)	516, 973, 1232, 1340
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	3 cut(s)	50, 639, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.