Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005059

Physical Location & Seq

Genomic Coordinates Forward (+)

18633694 .. 18635923

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCCTCCTTTGTTTTGACACAACTGGCTGGATTGCAAGTTCAAACAGAGCCTATAGTAAACTTGGACATTGACCATTACCGGATGCTTCACCAACGCCTTATTGAACATGAGGAGTCATTGTATGGAACTGCCTTGCATGTCCAGGTGGATGTTGAGGAAGTGATGTATATTGCAAAAGAGTTGTGGCATGGAAGAAGTGCAAGAGAGCCATTCGCTAAAGATGTAGGACGTGGGATGTGGCGATCGGTAAATGAGTTAATGCTTGTGAGGTGGGACAGGGAAAAGCCGGCATCTGTATCCAACCTAATTCTCTTAAAATTTAAAGAGGCAGATGAACATGAATCGACTACTCTGGAGGATATTAAAGAAAGAGAATCAGAATTTTTCGATAGAGTGACCTCTGTTCTGAAGCGCGCTGAGCTAGAATTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

147

Amino Acids

17.07

Weight (kDa)

5.15

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37530 AT5G37530
fragaria_vesca	FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991 FvH4_1g29991
malus_domestica	MD09G1267400.v1.1
prunus_persica	Prupe.3G165000_v2.0.a1 Prupe.3G165000_v2.0.a1
pyrus_communis	pycom09g18020 pycom09g18030
rosa_chinensis	RchiOBHm_Chr3g0492321
rosa_laevigata	RLG00000022783
rosa_multiflora	Rmu_sc0002530.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392430
rosa_rugosa	Rorug03G0253100 Rorug03G0253200
rosa_samantha	Rh3AG303100 Rh3BG339100 Rh3CG336300 Rh3DG338300
rosa_wichuraiana	Rw3G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	417
AcsI	RAATTY	3 cut(s)	320, 383, 428
AcuI	CTGAAG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	44, 107
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	320, 383, 428
AspLEI	GCGC	2 cut(s)	417, 419
AsuHPI	GGTGA	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	310
BlpI	GCTNAGC	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	75, 302
BpmI	CTGGAG	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	3 cut(s)	90, 157, 243
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	30
BsePI	GCGCGC	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	82, 290
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	245
Bsp1720I	GCTNAGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	289
BssHII	GCGCGC	1 cut(s)	415
BssMI	GATC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	291, 417
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	90, 157, 243
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	417, 419
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	417
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	90, 157, 243
Cac8I	GCNNGC	2 cut(s)	291, 417
CfoI	GCGC	2 cut(s)	417, 419
Cfr10I	RCCGGY	1 cut(s)	289
CviAII	CATG	4 cut(s)	110, 140, 191, 341
CviJI	RGCY	7 cut(s)	5, 29, 52, 211, 289, 424, 435
CviKI_1	RGCY	7 cut(s)	5, 29, 52, 211, 289, 424, 435
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraI	TTTAAA	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	113, 143, 194, 344
FaiI	YATR	7 cut(s)	56, 111, 126, 141, 171, 192, 342
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	109, 139, 190, 340
FokI	GGATG	3 cut(s)	97, 164, 250
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	2 cut(s)	416, 418
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	82, 290
HhaI	GCGC	2 cut(s)	417, 419
Hin1II	CATG	4 cut(s)	113, 143, 194, 344
Hin6I	GCGC	2 cut(s)	415, 417
HinP1I	GCGC	2 cut(s)	415, 417
HinfI	GANTC	3 cut(s)	116, 344, 377
HpaII	CCGG	2 cut(s)	82, 290
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	382, 411
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	37, 139, 176, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	113, 143, 194, 344
HspAI	GCGC	2 cut(s)	415, 417
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	11, 15, 95, 131, 158, 265, 303, 341
LweI	GCATC	2 cut(s)	75, 302
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	207
MluCI	AATT	4 cut(s)	309, 320, 383, 428
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	7 cut(s)	16, 106, 151, 264, 322, 352, 412
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	4 cut(s)	260, 317, 324, 366
MspI	CCGG	2 cut(s)	82, 290
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	421
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	245
NgoMIV	GCCGGC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	113, 143, 194, 344
NmuCI	GTSAC	1 cut(s)	397
NspI	RCATGY	1 cut(s)	143
PauI	GCGCGC	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	344, 377
Ple19I	CGATCG	1 cut(s)	248
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PteI	GCGCGC	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	248
SaqAI	TTAA	4 cut(s)	260, 317, 324, 366
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	6 cut(s)	150, 235, 275, 309, 404, 426
SfaNI	GCATC	2 cut(s)	75, 302
SfcI	CTRYAG	1 cut(s)	54
Sse9I	AATT	4 cut(s)	309, 320, 383, 428
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	347, 390
TasI	AATT	4 cut(s)	309, 320, 383, 428
TfiI	GAWTC	2 cut(s)	344, 377
Tru1I	TTAA	4 cut(s)	260, 317, 324, 366
Tru9I	TTAA	4 cut(s)	260, 317, 324, 366
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	351, 357
XapI	RAATTY	3 cut(s)	320, 383, 428
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.