Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Forward (+)

19107658 .. 19109261

Gene Structure 1604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G173600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGACACCATGTTGTTGCTCTTTCACTTCTTCAACCTCTATCTCCAAATTCATCTCAGAGAGACCACACCTCTCCATGCTTGAAAAACAATGTACCAACATGAAAGACCTCCAAAAGATCCATGCCCACCTCATCAAAACTGGCCTTGTCAGTGACACTGTTGCCGCTAGCAGGGTCTTGGCCTTCTGTGCCTCCCCAGCTGGAAACATCAACTATGCTTACATGGTTTTCAGAAACATCCAGAATCCAAACCTCTTCATTTGGAACACAATCATCAGAGGCTTCTCTGAAAGCCCAAGCCCAGAAATTGCAATCTCTCTTTTCATTGATATGTTGGTCACTTCAGCAATTGAGCCACATAGATTGACTTACCCTTCAGTCTTTAAGGCTTATGCTCAACTTGGTCTAGCCCAAGATGGAGCTCAGCTTCATGGAAGAATTCTAAAATTGGGTCTTGAAAGTGATCAGTTTATAAGAAATACCATCATACACATGTATGCAAATTGTGGGTTTTTGATTGAAGCAAGACGAATGTTTGATGAAGACTTGGAATGTGACACTGTTGCATGGAATTCTATGATAATGGGGCTTTCCAAATGGGGTGAAGTTAGTGAAGCTAAAAGGCTGTTTGATAAGTTTTCTTTGAGGAACTCAGTTTCTTGGAACTCTATGATTAGTGGGTTTGTTAGGAATGGGAAGTATACAGAGGCATTGGAACTTTTTAGTGAAATGCAGGAGGAGAGGGTTAAGCCTAGTGAGTTTACAATGGTGAGCCTGTTGAATGCTTCAGCTCAGTTAGGAGCAATTGGACAAGGGGAGTGGATTCATGAATATTTAAAGAAAAATGGTGTTGAAATGAATGCCATCGTTATCACAGCAATTATAAACATGTACTGCAAGTGTGGAAGCATCGAAAAAGCTATTCGTGTGTTTGAGGCAGCCCCCAGAAAAGGGTTGTCCTGTTGGAACTCCACCATCATGGGGCTAGCCATTAATGGTTGTGAGGAAGAAGCAATTGAGCTATTCTCAAGGCTTGAATCTTCAAATTTTATACCGGATGGTGTCAGTTTTCTTGGTGTCCTAACCGCGTGCAACCACTCAGGAATGGTGGATAAAGCAAGGGATTATTTCTCAATAATGAGAGGGACATATAAGATTGAACCTTCAATAAAACACTACAGTTGCATGGTTGATGTGTTAGGCCGAGCTGGACTTCTTGAAGAAGCAGAGGAGCTTATACATAGTATGCCAATGAAAGCAGATGCCATTATTTGGGGGTCTTTGCTCTCATCTTGTAGGAAGCATAGAAACATTGAGATGGCTAAAAGGGCAGCAAATCGTGTGATTGAATTGGATCCAAGTGACAGCTGCGGTTTTGTGCTTATGTCAAATGTTTATGCTGCCTCTAGTCAATTTCAGGAAGCAATGAAGGAAAGGCTTTCCATGAAGCAGCAGAAGATAGAGAAAGAACCGGGATGTAGTTTGATCGAAGTGGATGGGGAGGTTCATGAGTTTATAGCTGGTGGAAGGCTCCATCACAAAGCACCAGAGATTTATTCTTTGTTGAATGAGTTGGGATTCATGTTACCAGAAATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

534

Amino Acids

59.61

Weight (kDa)

6.01

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	473, 884
AccB7I	CCANNNNNTGG	1 cut(s)	1272
AccI	GTMKAC	1 cut(s)	701
AccII	CGCG	1 cut(s)	1088
AciI	CCGC	3 cut(s)	165, 1086, 1371
AclWI	GGATC	3 cut(s)	112, 1349, 1362
AcsI	RAATTY	4 cut(s)	47, 438, 571, 1045
AcuI	CTGAAG	3 cut(s)	327, 360, 771
AfaI	GTAC	2 cut(s)	94, 893
AfiI	CCNNNNNNNGG	5 cut(s)	171, 950, 951, 981, 1272
AflIII	ACRYGT	2 cut(s)	492, 888
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	112, 1349, 1362
AoxI	GGCC	3 cut(s)	142, 180, 1201
ApeKI	GCWGC	5 cut(s)	938, 1331, 1368, 1400, 1450
ApoI	RAATTY	4 cut(s)	47, 438, 571, 1045
AseI	ATTAAT	1 cut(s)	993
AsuC2I	CCSGG	1 cut(s)	1473
AsuHPI	GGTGA	2 cut(s)	614, 781
AsuNHI	GCTAGC	2 cut(s)	167, 985
BamHI	GGATCC	1 cut(s)	1354
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	5 cut(s)	950, 1343, 1355, 1387, 1462
BccI	CCATC	8 cut(s)	410, 491, 872, 983, 1052, 1312, 1490, 1542
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	1473
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	5 cut(s)	168, 407, 753, 986, 1407
BfmI	CTRYAG	1 cut(s)	1177
BisI	GCNGC	6 cut(s)	165, 939, 1332, 1369, 1401, 1451
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	6 cut(s)	166, 940, 1333, 1370, 1402, 1452
Bme1390I	CCNGG	1 cut(s)	1473
BmiI	GGNNCC	2 cut(s)	1356, 1532
BmrFI	CCNGG	1 cut(s)	1473
BmsI	GCATC	2 cut(s)	918, 1252
BmtI	GCTAGC	2 cut(s)	171, 989
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	2 cut(s)	1010, 1042
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	1012
BpuMI	CCSGG	1 cut(s)	1473
BsaI	GGTCTC	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	1054
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 950, 951, 981, 1272
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	1431
BseGI	GGATG	4 cut(s)	237, 1063, 1481, 1501
BseLI	CCNNNNNNNGG	5 cut(s)	171, 950, 951, 981, 1272
BseMI	GCAATG	1 cut(s)	1431
BseMII	CTCAG	5 cut(s)	69, 437, 666, 806, 1113
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	752, 1244
BseXI	GCAGC	5 cut(s)	950, 1343, 1355, 1387, 1462
BseYI	CCCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	1088
BshFI	GGCC	3 cut(s)	144, 182, 1203
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	1055, 1472
BslFI	GGGAC	1 cut(s)	1159
BslI	CCNNNNNNNGG	5 cut(s)	171, 950, 951, 981, 1272
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	1159
BsmI	GAATGC	2 cut(s)	787, 865
BsnI	GGCC	3 cut(s)	144, 182, 1203
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	117, 463, 1354, 1485
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	3 cut(s)	165, 1086, 1371
BspANI	GGCC	3 cut(s)	144, 182, 1203
BspCNI	CTCAG	5 cut(s)	68, 436, 665, 805, 1112
BspFNI	CGCG	1 cut(s)	1088
BspHI	TCATGA	2 cut(s)	826, 1507
BspLI	GGNNCC	2 cut(s)	1356, 1532
BspOI	GCTAGC	2 cut(s)	171, 989
BspPI	GGATC	3 cut(s)	112, 1349, 1362
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	1431
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	4 cut(s)	117, 463, 1354, 1485
BssNAI	GTATAC	1 cut(s)	702
Bst1107I	GTATAC	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	160, 562, 1181
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	169, 987, 1090
BstDEI	CTNAG	5 cut(s)	55, 423, 652, 792, 1099
BstF5I	GGATG	4 cut(s)	237, 1063, 1481, 1501
BstFNI	CGCG	1 cut(s)	1088
BstKTI	GATC	4 cut(s)	120, 466, 1357, 1488
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	117, 463, 1354, 1485
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 1328
BstNSI	RCATGY	2 cut(s)	496, 892
BstSCI	CCNGG	1 cut(s)	1471
BstSFI	CTRYAG	1 cut(s)	1177
BstUI	CGCG	1 cut(s)	1088
BstV1I	GCAGC	5 cut(s)	950, 1343, 1355, 1387, 1462
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	2 cut(s)	117, 1354
BstXI	CCANNNNNNTGG	1 cut(s)	979
BstYI	RGATCY	2 cut(s)	117, 1354
BstZ17I	GTATAC	1 cut(s)	702
BsuRI	GGCC	3 cut(s)	144, 182, 1203
BtsCI	GGATG	4 cut(s)	237, 1063, 1481, 1501
BtsIMutI	CAGTG	3 cut(s)	156, 157, 558
Cac8I	GCNNGC	3 cut(s)	169, 987, 1090
CciI	TCATGA	2 cut(s)	826, 1507
Csp6I	GTAC	2 cut(s)	93, 892
CspCI	CAANNNNNGTGG	4 cut(s)	345, 380, 800, 835
CviQI	GTAC	2 cut(s)	93, 892
DdeI	CTNAG	5 cut(s)	55, 423, 652, 792, 1099
DpnI	GATC	4 cut(s)	119, 465, 1356, 1487
DpnII	GATC	4 cut(s)	117, 463, 1354, 1485
DraI	TTTAAA	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	3 cut(s)	327, 360, 771
EcoICRI	GAGCTC	1 cut(s)	422
EcoRI	GAATTC	2 cut(s)	438, 571
EcoT38I	GRGCYC	1 cut(s)	424
FaqI	GGGAC	1 cut(s)	1159
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	6 cut(s)	165, 939, 1332, 1369, 1401, 1451
FokI	GGATG	4 cut(s)	224, 1070, 1488, 1508
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	6 cut(s)	165, 939, 1332, 1369, 1401, 1451
FspBI	CTAG	5 cut(s)	168, 407, 753, 986, 1407
GluI	GCNGC	6 cut(s)	165, 939, 1332, 1369, 1401, 1451
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	144, 182, 1203
HapII	CCGG	2 cut(s)	1055, 1472
HinfI	GANTC	4 cut(s)	244, 823, 1037, 1578
HpaII	CCGG	2 cut(s)	1055, 1472
HphI	GGTGA	2 cut(s)	614, 781
Hpy166II	GTNNAC	2 cut(s)	702, 762
Hpy188I	TCNGA	4 cut(s)	58, 233, 278, 289
Hpy188III	TCNNGA	7 cut(s)	241, 455, 827, 1101, 1217, 1418, 1508
Hpy8I	GTNNAC	2 cut(s)	702, 762
HpyAV	CCTTC	5 cut(s)	193, 384, 1173, 1423, 1521
HpyCH4III	ACNGT	3 cut(s)	160, 562, 1181
HpyCH4V	TGCA	7 cut(s)	311, 500, 566, 733, 897, 1092, 1185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 1328
HpyF3I	CTNAG	5 cut(s)	55, 423, 652, 792, 1099
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	117, 463, 1354, 1485
LmnI	GCTCC	4 cut(s)	419, 800, 1231, 1536
Lsp1109I	GCAGC	5 cut(s)	950, 1343, 1355, 1387, 1462
LweI	GCATC	2 cut(s)	918, 1252
MaeI	CTAG	5 cut(s)	168, 407, 753, 986, 1407
MaeIII	GTNAC	5 cut(s)	152, 337, 554, 1361, 1584
MalI	GATC	4 cut(s)	119, 465, 1356, 1487
MboI	GATC	4 cut(s)	117, 463, 1354, 1485
MboII	GAAGA	8 cut(s)	21, 247, 447, 554, 1019, 1032, 1232, 1468
MfeI	CAATTG	3 cut(s)	348, 804, 1014
MflI	RGATCY	2 cut(s)	117, 1354
MhlI	GDGCHC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	944
MseI	TTAA	4 cut(s)	384, 747, 836, 993
MslI	CAYNNNNRTG	5 cut(s)	329, 491, 495, 977, 1316
MspA1I	CMGCKG	2 cut(s)	200, 1368
MspI	CCGG	2 cut(s)	1055, 1472
MspR9I	CCNGG	1 cut(s)	1473
MunI	CAATTG	3 cut(s)	348, 804, 1014
Mva1269I	GAATGC	2 cut(s)	787, 865
MvnI	CGCG	1 cut(s)	1088
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 1328
NciI	CCSGG	1 cut(s)	1473
NdeII	GATC	4 cut(s)	117, 463, 1354, 1485
NheI	GCTAGC	2 cut(s)	167, 985
NlaIV	GGNNCC	2 cut(s)	1356, 1532
NmeAIII	GCCGAG	1 cut(s)	1229
NmuCI	GTSAC	4 cut(s)	152, 337, 554, 1361
NspI	RCATGY	2 cut(s)	496, 892
PagI	TCATGA	2 cut(s)	826, 1507
PciI	ACATGT	2 cut(s)	492, 888
PctI	GAATGC	2 cut(s)	787, 865
PfeI	GAWTC	4 cut(s)	244, 823, 1037, 1578
PflMI	CCANNNNNTGG	1 cut(s)	1272
PkrI	GCNGC	6 cut(s)	166, 940, 1333, 1370, 1402, 1452
PscI	ACATGT	2 cut(s)	492, 888
PshBI	ATTAAT	1 cut(s)	993
PsiI	TTATAA	2 cut(s)	473, 884
Psp124BI	GAGCTC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	1356, 1532
PsuI	RGATCY	2 cut(s)	117, 1354
PvuII	CAGCTG	2 cut(s)	200, 1368
RsaI	GTAC	2 cut(s)	94, 893
RsaNI	GTAC	2 cut(s)	93, 892
RseI	CAYNNNNRTG	5 cut(s)	329, 491, 495, 977, 1316
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	4 cut(s)	384, 747, 836, 993
SatI	GCNGC	6 cut(s)	165, 939, 1332, 1369, 1401, 1451
Sau3AI	GATC	4 cut(s)	117, 463, 1354, 1485
ScrFI	CCNGG	1 cut(s)	1473
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	2 cut(s)	918, 1252
SfcI	CTRYAG	1 cut(s)	1177
SmiMI	CAYNNNNRTG	5 cut(s)	329, 491, 495, 977, 1316
SmlI	CTYRAG	1 cut(s)	1027
SmoI	CTYRAG	1 cut(s)	1027
SsiI	CCGC	3 cut(s)	165, 1086, 1371
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	5 cut(s)	168, 407, 753, 986, 1407
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	1471
TaaI	ACNGT	3 cut(s)	160, 562, 1181
TaqI	TCGA	2 cut(s)	912, 1488
TatI	WGTACW	1 cut(s)	891
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	244, 823, 1037, 1578
Tru1I	TTAA	4 cut(s)	384, 747, 836, 993
Tru9I	TTAA	4 cut(s)	384, 747, 836, 993
TscAI	CASTG	3 cut(s)	157, 163, 565
TseFI	GTSAC	4 cut(s)	152, 337, 554, 1361
TseI	GCWGC	5 cut(s)	938, 1331, 1368, 1400, 1450
Tsp45I	GTSAC	4 cut(s)	152, 337, 554, 1361
TspRI	CASTG	3 cut(s)	157, 163, 565
Van91I	CCANNNNNTGG	1 cut(s)	1272
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	4 cut(s)	47, 438, 571, 1045
XceI	RCATGY	2 cut(s)	496, 892
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	5 cut(s)	168, 407, 753, 986, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.