Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005287.1

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Reverse (-)

15619 .. 17172

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005287.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

atgctagaaaaccaatgcaccaacatgaaagacctccagaaaatccatgcccacctcatcaaaactggcctagccactgacacagttgccgccagccgtgtcttggccttttgtgcctccccagccggaaacatcaactatgcctacatggttttcagacatatccagaacccaaacctcttcatctggaacaccatcattagaggtttctctaacagctcaaaccctgaagctgccatctctcttttcattgacatgttggtcacttcagctatccagccacaaaggttgacttacccttcagttttcaaggcttatgctcaagtgggtctagcccgtgatggagctcagcttcatgggagagttgtgaagttgggtcttgaaagggaccagtttataaggaacaccatcatacatatgtactcaaactgtggctttttgagtgaagcaaaaagagtgtttgaagaagagttggaatttgacattgttgcatggaattctatggtaatgggcctttccaaatgtggtgaagtcagtgaatctagaaggctgtttgataaaatgcttcgaaggaattcgatttcgtggaattcgatgattggtggatatgttaggaatggaatgtacacagaagctttggatctttttggtgaaatgcagaagaagaagataaagcctagtgaatttacaatggtgagcctgttgaatgcttcagctcagttaggagcaattagacaaggggagtggattcatgaatatataaggaaaaatcacatccaactcaatcccattgttgtaacagcaatcatcaatatgtattgcaagtgtggaagcattgagaaagctgttcaggtgtttgaggcagctcctagaacagggttatcttgttggaactccattattatggggttagcaactaatggttgtgaagaagaagcaatcgagctattctcaaggcttgaatcttcgagttttgtacccgatgatgtcagttttcttggtgttctaactgcatgtagtcactcggggatggtggagaaagcaaggaagtatttttcagtaatgagagaaacaaataagattgcaccatccattaagcactatagttgcatggttgatgtgttaggcagagctggacttcttgaagaggctgagaagctcatagatggtatgccaatagaagccgacgcgattatttggggttctttgctgtcatcttgtaggaagcacagagacattgagatggctaagcgggcagcaaagcatgtaactgagttggatccaagtgacagttgtggttatgtgttaatgtcaaatgtttatgctgcctctagtcaatttgaggaagcaatgcaggaaaggctttcaatgagagagcagaagattgagaaagaaccgggatgtagtttgatcgaagtggatggagaggttcatgagtttatagctggtggaaggctgcatcagaaagccccagagatttattcactattgaatggattgggatttatgttacaaagaaatgcaataggttatgatgaacttgctgcctattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

517

Amino Acids

57.86

Weight (kDa)

6.26

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AasI	GACNNNNNNGTC	1 cut(s)	260
AccII	CGCG	1 cut(s)	1190
AciI	CCGC	2 cut(s)	90, 1252
AclWI	GGATC	3 cut(s)	648, 1274, 1287
AcsI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
AcuI	CTGAAG	4 cut(s)	249, 252, 285, 696
AfaI	GTAC	3 cut(s)	422, 626, 978
AfiI	CCNNNNNNNGG	2 cut(s)	103, 875
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	8 cut(s)	310, 383, 464, 706, 962, 1145, 1368, 1492
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	1227
AlwI	GGATC	3 cut(s)	648, 1274, 1287
Ama87I	CYCGRG	1 cut(s)	1024
AoxI	GGCC	3 cut(s)	67, 105, 511
ApeKI	GCWGC	6 cut(s)	233, 863, 1256, 1325, 1456, 1544
ApoI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
Asp700I	GAANNNNTTC	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	388, 511
AsuC2I	CCSGG	1 cut(s)	1398
AsuHPI	GGTGA	3 cut(s)	539, 662, 706
AsuII	TTCGAA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	1024
AvaII	GGWCC	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	1279
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	220, 875, 1268, 1312, 1443, 1531
BccI	CCATC	9 cut(s)	203, 245, 335, 416, 1024, 1096, 1160, 1237, 1415
BceAI	ACGGC	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	1398
BcoDI	GTCTC	1 cut(s)	1227
BfaI	CTAG	7 cut(s)	5, 71, 332, 543, 678, 870, 1332
BfmI	CTRYAG	1 cut(s)	1102
BisI	GCNGC	7 cut(s)	90, 234, 864, 1257, 1326, 1457, 1545
BlpI	GCTNAGC	2 cut(s)	348, 1248
BlsI	GCNGC	7 cut(s)	91, 235, 865, 1258, 1327, 1458, 1546
Bme1390I	CCNGG	1 cut(s)	1398
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	1024
BmgT120I	GGNCC	2 cut(s)	388, 511
BmiI	GGNNCC	2 cut(s)	389, 1281
BmrFI	CCNGG	1 cut(s)	1398
BmsI	GCATC	1 cut(s)	1468
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	1 cut(s)	20
Bpu1102I	GCTNAGC	2 cut(s)	348, 1248
Bpu14I	TTCGAA	1 cut(s)	568
BpuEI	CTTGAG	2 cut(s)	306, 937
BpuMI	CCSGG	1 cut(s)	1398
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 875
Bse1I	ACTGG	2 cut(s)	70, 391
Bse3DI	GCAATG	1 cut(s)	1356
BseGI	GGATG	5 cut(s)	774, 1035, 1088, 1406, 1426
BseLI	CCNNNNNNNGG	2 cut(s)	103, 875
BseMI	GCAATG	1 cut(s)	1356
BseMII	CTCAG	4 cut(s)	362, 731, 1143, 1263
BseNI	ACTGG	2 cut(s)	70, 391
BseXI	GCAGC	6 cut(s)	220, 875, 1268, 1312, 1443, 1531
BseYI	CCCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	1190
BshFI	GGCC	3 cut(s)	69, 107, 513
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	1024
BsiSI	CCGG	2 cut(s)	126, 1397
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	103, 875
BsmAI	GTCTC	1 cut(s)	1227
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	69, 107, 513
BsoBI	CYCGRG	1 cut(s)	1024
Bsp119I	TTCGAA	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	640, 1279, 1410
Bsp1720I	GCTNAGC	2 cut(s)	348, 1248
BspACI	CCGC	2 cut(s)	90, 1252
BspANI	GGCC	3 cut(s)	69, 107, 513
BspCNI	CTCAG	4 cut(s)	361, 730, 1144, 1264
BspFNI	CGCG	1 cut(s)	1190
BspHI	TCATGA	2 cut(s)	751, 1432
BspLI	GGNNCC	2 cut(s)	389, 1281
BspPI	GGATC	3 cut(s)	648, 1274, 1287
BspT104I	TTCGAA	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	1356
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	70, 391
BssMI	GATC	3 cut(s)	640, 1279, 1410
Bst4CI	ACNGT	3 cut(s)	85, 431, 1292
Bst6I	CTCTTC	3 cut(s)	185, 462, 1140
BstAUI	TGTACA	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	94, 1254
BstDEI	CTNAG	5 cut(s)	348, 717, 1152, 1248, 1272
BstENI	CCTNNNNNAGG	1 cut(s)	873
BstF5I	GGATG	5 cut(s)	774, 1035, 1088, 1406, 1426
BstFNI	CGCG	1 cut(s)	1190
BstKTI	GATC	3 cut(s)	643, 1282, 1413
BstMAI	GTCTC	1 cut(s)	1227
BstMBI	GATC	3 cut(s)	640, 1279, 1410
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 122, 1253, 1360
BstNSI	RCATGY	3 cut(s)	259, 1017, 1268
BstSCI	CCNGG	1 cut(s)	1396
BstSFI	CTRYAG	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	1190
BstV1I	GCAGC	6 cut(s)	220, 875, 1268, 1312, 1443, 1531
BstX2I	RGATCY	2 cut(s)	640, 1279
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	2 cut(s)	640, 1279
BsuRI	GGCC	3 cut(s)	69, 107, 513
BtsCI	GGATG	5 cut(s)	774, 1035, 1088, 1406, 1426
BtsIMutI	CAGTG	2 cut(s)	75, 541
Cac8I	GCNNGC	2 cut(s)	94, 1254
CciI	TCATGA	2 cut(s)	751, 1432
Cfr13I	GGNCC	2 cut(s)	388, 511
CseI	GACGC	1 cut(s)	1196
Csp6I	GTAC	3 cut(s)	421, 625, 977
CspCI	CAANNNNNGTGG	4 cut(s)	270, 305, 725, 760
CviQI	GTAC	3 cut(s)	421, 625, 977
DdeI	CTNAG	5 cut(s)	348, 717, 1152, 1248, 1272
DpnI	GATC	3 cut(s)	642, 1281, 1412
DpnII	GATC	3 cut(s)	640, 1279, 1410
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	3 cut(s)	185, 462, 1140
EarI	CTCTTC	3 cut(s)	185, 462, 1140
Ecl136II	GAGCTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	4 cut(s)	249, 252, 285, 696
Eco88I	CYCGRG	1 cut(s)	1024
EcoICRI	GAGCTC	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	873
EcoRI	GAATTC	3 cut(s)	496, 574, 589
EcoT38I	GRGCYC	1 cut(s)	349
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FaqI	GGGAC	1 cut(s)	401
FauI	CCCGC	1 cut(s)	1245
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	90, 234, 864, 1257, 1326, 1457, 1545
FokI	GGATG	5 cut(s)	761, 1042, 1075, 1413, 1433
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	90, 234, 864, 1257, 1326, 1457, 1545
FspBI	CTAG	7 cut(s)	5, 71, 332, 543, 678, 870, 1332
GluI	GCNGC	7 cut(s)	90, 234, 864, 1257, 1326, 1457, 1545
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	69, 107, 513
HapII	CCGG	2 cut(s)	126, 1397
HgaI	GACGC	1 cut(s)	1196
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	3 cut(s)	539, 748, 962
HpaII	CCGG	2 cut(s)	126, 1397
HphI	GGTGA	3 cut(s)	539, 662, 706
Hpy166II	GTNNAC	2 cut(s)	291, 627
Hpy188I	TCNGA	2 cut(s)	158, 1464
Hpy188III	TCNNGA	8 cut(s)	37, 166, 187, 380, 543, 752, 1142, 1433
Hpy8I	GTNNAC	2 cut(s)	291, 627
Hpy99I	CGWCG	1 cut(s)	1190
HpyAV	CCTTC	4 cut(s)	309, 540, 564, 1446
HpyCH4III	ACNGT	3 cut(s)	85, 431, 1292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 122, 1253, 1360
HpyF3I	CTNAG	5 cut(s)	348, 717, 1152, 1248, 1272
Kzo9I	GATC	3 cut(s)	640, 1279, 1410
LmnI	GCTCC	3 cut(s)	344, 725, 871
Lsp1109I	GCAGC	6 cut(s)	220, 875, 1268, 1312, 1443, 1531
LweI	GCATC	1 cut(s)	1468
MaeI	CTAG	7 cut(s)	5, 71, 332, 543, 678, 870, 1332
MaeIII	GTNAC	6 cut(s)	262, 796, 1019, 1267, 1286, 1509
MalI	GATC	3 cut(s)	642, 1281, 1412
MboI	GATC	3 cut(s)	640, 1279, 1410
MflI	RGATCY	2 cut(s)	640, 1279
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	7 cut(s)	476, 496, 574, 589, 683, 729, 1337
MmeI	TCCRAC	4 cut(s)	453, 802, 869, 1257
MroXI	GAANNNNTTC	1 cut(s)	574
MseI	TTAA	3 cut(s)	1095, 1307, 1552
MslI	CAYNNNNRTG	6 cut(s)	23, 254, 416, 812, 902, 1241
MspI	CCGG	2 cut(s)	126, 1397
MspR9I	CCNGG	1 cut(s)	1398
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	4 cut(s)	113, 122, 1253, 1360
NciI	CCSGG	1 cut(s)	1398
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	3 cut(s)	640, 1279, 1410
NlaIV	GGNNCC	2 cut(s)	389, 1281
NmuCI	GTSAC	3 cut(s)	262, 1019, 1286
NspI	RCATGY	3 cut(s)	259, 1017, 1268
NspV	TTCGAA	1 cut(s)	568
PagI	TCATGA	2 cut(s)	751, 1432
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PctI	GAATGC	1 cut(s)	712
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	539, 748, 962
PkrI	GCNGC	7 cut(s)	91, 235, 865, 1258, 1327, 1458, 1546
PscI	ACATGT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	389, 1281
PspPI	GGNCC	2 cut(s)	388, 511
PsuI	RGATCY	2 cut(s)	640, 1279
RsaI	GTAC	3 cut(s)	422, 626, 978
RsaNI	GTAC	3 cut(s)	421, 625, 977
RseI	CAYNNNNRTG	6 cut(s)	23, 254, 416, 812, 902, 1241
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	1095, 1307, 1552
SatI	GCNGC	7 cut(s)	90, 234, 864, 1257, 1326, 1457, 1545
Sau3AI	GATC	3 cut(s)	640, 1279, 1410
Sau96I	GGNCC	2 cut(s)	388, 511
ScrFI	CCNGG	1 cut(s)	1398
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	1468
SfcI	CTRYAG	1 cut(s)	1102
SfuI	TTCGAA	1 cut(s)	568
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	6 cut(s)	23, 254, 416, 812, 902, 1241
SmlI	CTYRAG	2 cut(s)	321, 952
SmoI	CTYRAG	2 cut(s)	321, 952
Sse9I	AATT	7 cut(s)	476, 496, 574, 589, 683, 729, 1337
SsiI	CCGC	2 cut(s)	90, 1252
SspMI	CTAG	7 cut(s)	5, 71, 332, 543, 678, 870, 1332
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	1396
TaaI	ACNGT	3 cut(s)	85, 431, 1292
TaqI	TCGA	6 cut(s)	568, 578, 593, 942, 968, 1413
TasI	AATT	7 cut(s)	476, 496, 574, 589, 683, 729, 1337
TatI	WGTACW	2 cut(s)	420, 624
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	539, 748, 962
Tru1I	TTAA	3 cut(s)	1095, 1307, 1552
Tru9I	TTAA	3 cut(s)	1095, 1307, 1552
TscAI	CASTG	2 cut(s)	82, 541
TseFI	GTSAC	3 cut(s)	262, 1019, 1286
TseI	GCWGC	6 cut(s)	233, 863, 1256, 1325, 1456, 1544
Tsp45I	GTSAC	3 cut(s)	262, 1019, 1286
TspDTI	ATGAA	8 cut(s)	41, 172, 238, 344, 740, 768, 1421, 1551
TspRI	CASTG	2 cut(s)	82, 541
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	873
XapI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	3 cut(s)	259, 1017, 1268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	7 cut(s)	5, 71, 332, 543, 678, 870, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.