Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Forward (+)

65503210 .. 65504837

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGACACCATGTTGTTGCTCTTTCACTTCTTCAACCTCAATATCCAAATTCATCTCAGACAAACCACACCTCTCCATGCTAGAAAACCACTGCACCAACATGAAAGACCTCCAGAAAATCCATGGCCACCTCATCAAAACTGGCCTAGCCAATGACACAGTTGCCGCCAGCCGTGTCTTGGCCTTTTGTGCCTCCCCAGCCGGAAACATCAACTATGCCTACATGGTTTTCAGACATATCCAGAACCCAAACCTCTTCATCTGGAACACCATCATTAGAGGTTTCTCTAACAGCTCAAACCCTGAAGCTGCCATCTCTCTTTTCATTGACATGTTGGTCACTTCAGCTATCCAGCCACAAAGGTTGACTTACCCTTCAGTTTTCAAGGCTTATGCTCAAGTGGGTCTTGCCCGTGATGGAGCTCAGCTTCATGGGAGAGTTGTGAAGTTGGGTCTTGAAAGGGACCAGTTCATAAGGAACACCATCATACATATGTACTCAAACTGTGGCTTTTTGAGTGAAGCAAAAAGAGTGTTTGAAGAAGAGTTGGAATTTGACATTGTTGCATGGAATTCTATGGTAATGGGCCTTTCCAAATGTGGTGAAGTCAGTGAATCTAGAAGGCTGTTTGATAAAATGCTTCGAAGGAATTCGATTTCGTGGAATTCGATGATTGCTTTGGATCTTTTTGGTGAAATGCAGAAGAAGAAGATAAAGCCTAGTGAATTTACAATGGTGAGCCTGTTGAATGCTTCAGCTCAGTTAGGAGCAATTAGACAAGGGGAGTGGATTCATGAATATATAAGGAAAAATCACATTCAACTCAATCCCATTGTTGTAACAGCAATCATCAATATGTATTGCAAGTGTGGAAGCATTGAAAAAGCTGTTCAGGTGTTTGAGGCAGCTCCTAGAACAGGGTTATCTTGTTGGAACTCCATTATTATGGGGTTAGCAACTAATGGTTGTGAAGAAGAAGCAATCGAGCTATTCTCAAGGCTTGAATCTTCGAGTTTTGTACCCGATGATGTCAGTTTTCTTGGTGTTCTAACTGCATGTAGTCACTCGGGGATGGTGGAGAAAGCAAGGAAGTATTTTTCAGTAATGAGAGAAACAAATAAGATTGCACCATCCATTAAGCACTATAGTTGCATGGTTGATGTGTTAGGCAGAGCTGGACTTCTTGAAGAAGCTGAGAAGCTCATAGATGGTATGCCAATAAAAGCCGACCCGATTATTTGGGGTTCTTTGCTGTCATCTTGTAGGAAGCACAGAGACATTGAGATGGCTAAGCGGGCAGCAAAGCATGTAACTGAGTTGGATCCAAGTGACAGTTGTGGTTATGTGTTAATGTCAAATGTTTATGCTGCCTCTAGTCAATTTGAGGAAGCAATGCAGGAAAGGCTTTCAATGAGAGAGCAGAAGATTGAGAAAGAACCGGGATGTAGTTTGATCGAAGTGGATGGAGAGGTTCATGAGTTTATAGCTGGTGGAAGGCTGCATCAGAAAGCCCCAGAGATTTATTCACTATTGAATGGATTGGGATTTATGTTACAAAGAAATGCAATAGGTTATGATGAACTTGCTGCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

531

Amino Acids

59.35

Weight (kDa)

6.74

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 132	7.4e-07	PPR repeat family
PPR	PF01535	188 - 217	1.5e-06	PPR repeat
E_motif	PF20431	424 - 486	1.9e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AciI	CCGC	2 cut(s)	165, 1294
AclWI	GGATC	3 cut(s)	690, 1316, 1329
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 725
AcuI	CTGAAG	4 cut(s)	324, 327, 360, 738
AfaI	GTAC	2 cut(s)	497, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	178, 917
AflIII	ACRYGT	1 cut(s)	330
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	1269
AlwI	GGATC	3 cut(s)	690, 1316, 1329
Ama87I	CYCGRG	1 cut(s)	1066
AoxI	GGCC	4 cut(s)	124, 142, 180, 586
ApeKI	GCWGC	6 cut(s)	308, 905, 1298, 1367, 1498, 1586
ApoI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 725
Asp700I	GAANNNNTTC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	463, 586
AsuC2I	CCSGG	1 cut(s)	1440
AsuHPI	GGTGA	3 cut(s)	614, 704, 748
AsuII	TTCGAA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	1066
AvaII	GGWCC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	1321
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	6 cut(s)	295, 917, 1310, 1354, 1485, 1573
BccI	CCATC	9 cut(s)	278, 320, 410, 491, 1066, 1138, 1202, 1279, 1457
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	1440
BcoDI	GTCTC	1 cut(s)	1269
BfaI	CTAG	6 cut(s)	80, 146, 618, 720, 912, 1374
BfmI	CTRYAG	1 cut(s)	1144
BisI	GCNGC	7 cut(s)	165, 309, 906, 1299, 1368, 1499, 1587
BlpI	GCTNAGC	2 cut(s)	423, 1290
BlsI	GCNGC	7 cut(s)	166, 310, 907, 1300, 1369, 1500, 1588
Bme1390I	CCNGG	1 cut(s)	1440
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	1066
BmgT120I	GGNCC	2 cut(s)	463, 586
BmiI	GGNNCC	2 cut(s)	464, 1323
BmrFI	CCNGG	1 cut(s)	1440
BmsI	GCATC	1 cut(s)	1510
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	1 cut(s)	95
Bpu1102I	GCTNAGC	2 cut(s)	423, 1290
Bpu14I	TTCGAA	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	381, 979
BpuMI	CCSGG	1 cut(s)	1440
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 917
Bse1I	ACTGG	2 cut(s)	145, 466
Bse3DI	GCAATG	1 cut(s)	1398
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	4 cut(s)	1077, 1130, 1448, 1468
BseLI	CCNNNNNNNGG	2 cut(s)	178, 917
BseMI	GCAATG	1 cut(s)	1398
BseMII	CTCAG	5 cut(s)	69, 437, 773, 1185, 1305
BseNI	ACTGG	2 cut(s)	145, 466
BseXI	GCAGC	6 cut(s)	295, 917, 1310, 1354, 1485, 1573
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	126, 144, 182, 588
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	1066
BsiSI	CCGG	2 cut(s)	201, 1439
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	178, 917
BsmAI	GTCTC	1 cut(s)	1269
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	126, 144, 182, 588
BsoBI	CYCGRG	1 cut(s)	1066
Bsp119I	TTCGAA	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	682, 1321, 1452
Bsp1720I	GCTNAGC	2 cut(s)	423, 1290
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	2 cut(s)	165, 1294
BspANI	GGCC	4 cut(s)	126, 144, 182, 588
BspCNI	CTCAG	5 cut(s)	68, 436, 772, 1186, 1306
BspHI	TCATGA	2 cut(s)	793, 1474
BspLI	GGNNCC	2 cut(s)	464, 1323
BspPI	GGATC	3 cut(s)	690, 1316, 1329
BspT104I	TTCGAA	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	1398
BsrI	ACTGG	2 cut(s)	145, 466
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	682, 1321, 1452
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	160, 506, 1334
Bst6I	CTCTTC	2 cut(s)	260, 537
BstBI	TTCGAA	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	169, 1296
BstDEI	CTNAG	6 cut(s)	55, 423, 759, 1194, 1290, 1314
BstDSI	CCRYGG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	4 cut(s)	1077, 1130, 1448, 1468
BstKTI	GATC	3 cut(s)	685, 1324, 1455
BstMAI	GTCTC	1 cut(s)	1269
BstMBI	GATC	3 cut(s)	682, 1321, 1452
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 197, 1295, 1402
BstNSI	RCATGY	3 cut(s)	334, 1059, 1310
BstSCI	CCNGG	1 cut(s)	1438
BstSFI	CTRYAG	1 cut(s)	1144
BstV1I	GCAGC	6 cut(s)	295, 917, 1310, 1354, 1485, 1573
BstX2I	RGATCY	2 cut(s)	682, 1321
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstYI	RGATCY	2 cut(s)	682, 1321
BsuRI	GGCC	4 cut(s)	126, 144, 182, 588
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	4 cut(s)	1077, 1130, 1448, 1468
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 616
Cac8I	GCNNGC	2 cut(s)	169, 1296
CciI	TCATGA	2 cut(s)	793, 1474
Cfr13I	GGNCC	2 cut(s)	463, 586
Csp6I	GTAC	2 cut(s)	496, 1019
CspCI	CAANNNNNGTGG	4 cut(s)	345, 380, 767, 802
CviQI	GTAC	2 cut(s)	496, 1019
DdeI	CTNAG	6 cut(s)	55, 423, 759, 1194, 1290, 1314
DpnI	GATC	3 cut(s)	684, 1323, 1454
DpnII	GATC	3 cut(s)	682, 1321, 1452
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	260, 537
EarI	CTCTTC	2 cut(s)	260, 537
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	4 cut(s)	324, 327, 360, 738
Eco88I	CYCGRG	1 cut(s)	1066
EcoICRI	GAGCTC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoRI	GAATTC	3 cut(s)	571, 649, 664
EcoT14I	CCWWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	121
FalI	AAGNNNNNCTT	4 cut(s)	352, 384, 390, 422
FaqI	GGGAC	1 cut(s)	476
FauI	CCCGC	1 cut(s)	1287
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	7 cut(s)	165, 309, 906, 1299, 1368, 1499, 1587
FokI	GGATG	4 cut(s)	1084, 1117, 1455, 1475
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	165, 309, 906, 1299, 1368, 1499, 1587
FspBI	CTAG	6 cut(s)	80, 146, 618, 720, 912, 1374
GluI	GCNGC	7 cut(s)	165, 309, 906, 1299, 1368, 1499, 1587
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	4 cut(s)	126, 144, 182, 588
HapII	CCGG	2 cut(s)	201, 1439
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	614, 790, 1004
HpaII	CCGG	2 cut(s)	201, 1439
HphI	GGTGA	3 cut(s)	614, 704, 748
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	3 cut(s)	58, 233, 1506
Hpy188III	TCNNGA	8 cut(s)	112, 241, 262, 455, 618, 794, 1184, 1475
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	4 cut(s)	384, 615, 639, 1488
HpyCH4III	ACNGT	3 cut(s)	160, 506, 1334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 197, 1295, 1402
HpyF3I	CTNAG	6 cut(s)	55, 423, 759, 1194, 1290, 1314
Kzo9I	GATC	3 cut(s)	682, 1321, 1452
LmnI	GCTCC	3 cut(s)	419, 767, 913
Lsp1109I	GCAGC	6 cut(s)	295, 917, 1310, 1354, 1485, 1573
LweI	GCATC	1 cut(s)	1510
MaeI	CTAG	6 cut(s)	80, 146, 618, 720, 912, 1374
MaeIII	GTNAC	6 cut(s)	337, 838, 1061, 1309, 1328, 1551
MalI	GATC	3 cut(s)	684, 1323, 1454
MboI	GATC	3 cut(s)	682, 1321, 1452
MflI	RGATCY	2 cut(s)	682, 1321
MhlI	GDGCHC	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	8 cut(s)	47, 551, 571, 649, 664, 725, 771, 1379
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	528, 911, 1299
Mox20I	TGGCCA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	3 cut(s)	1137, 1349, 1594
MslI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 854, 944, 1283
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	2 cut(s)	201, 1439
MspR9I	CCNGG	1 cut(s)	1440
Mva1269I	GAATGC	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	188, 197, 1295, 1402
NciI	CCSGG	1 cut(s)	1440
NcoI	CCATGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	682, 1321, 1452
NlaIV	GGNNCC	2 cut(s)	464, 1323
NmuCI	GTSAC	3 cut(s)	337, 1061, 1328
NspI	RCATGY	3 cut(s)	334, 1059, 1310
NspV	TTCGAA	1 cut(s)	643
PagI	TCATGA	2 cut(s)	793, 1474
PciI	ACATGT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	614, 790, 1004
PkrI	GCNGC	7 cut(s)	166, 310, 907, 1300, 1369, 1500, 1588
PscI	ACATGT	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	464, 1323
PspPI	GGNCC	2 cut(s)	463, 586
PsuI	RGATCY	2 cut(s)	682, 1321
RsaI	GTAC	2 cut(s)	497, 1020
RsaNI	GTAC	2 cut(s)	496, 1019
RseI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 854, 944, 1283
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	1137, 1349, 1594
SatI	GCNGC	7 cut(s)	165, 309, 906, 1299, 1368, 1499, 1587
Sau3AI	GATC	3 cut(s)	682, 1321, 1452
Sau96I	GGNCC	2 cut(s)	463, 586
ScrFI	CCNGG	1 cut(s)	1440
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	1510
SfcI	CTRYAG	1 cut(s)	1144
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 854, 944, 1283
SmlI	CTYRAG	2 cut(s)	396, 994
SmoI	CTYRAG	2 cut(s)	396, 994
Sse9I	AATT	8 cut(s)	47, 551, 571, 649, 664, 725, 771, 1379
SsiI	CCGC	2 cut(s)	165, 1294
SspMI	CTAG	6 cut(s)	80, 146, 618, 720, 912, 1374
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	1438
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	160, 506, 1334
TaqI	TCGA	6 cut(s)	643, 653, 668, 984, 1010, 1455
TasI	AATT	8 cut(s)	47, 551, 571, 649, 664, 725, 771, 1379
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	614, 790, 1004
Tru1I	TTAA	3 cut(s)	1137, 1349, 1594
Tru9I	TTAA	3 cut(s)	1137, 1349, 1594
TscAI	CASTG	2 cut(s)	95, 616
TseFI	GTSAC	3 cut(s)	337, 1061, 1328
TseI	GCWGC	6 cut(s)	308, 905, 1298, 1367, 1498, 1586
Tsp45I	GTSAC	3 cut(s)	337, 1061, 1328
TspRI	CASTG	2 cut(s)	95, 616
VpaK11BI	GGWCC	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 725
XbaI	TCTAGA	1 cut(s)	617
XceI	RCATGY	3 cut(s)	334, 1059, 1310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 175
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	6 cut(s)	80, 146, 618, 720, 912, 1374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.