Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Reverse (-)

54793039 .. 54794888

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0427200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGGTCTGGCCCAGATTGGAGCTACTTTCCCTCTCAACTGATTTCCCTCTCAACTCAAACCCTAGCCCCTCCTCCTCTTGTCTCACAGCTCGCCTGAGGCTACTGAATGCGATCATGGCCGACGTCGCCACCTTGTCGTGTGCTCGTTGCAACAAACCCGCCAATCTTCAGTGTCCCAAGTGTGTGGAATTGAAGCTTCCTCGTGAAGATGCCGCTTTCTGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTTGCATAAATCGTTATGTGTTTCTGCAGGGAAAGGAGTGCCTAATTTCTGGTTGTATGCTTTAAAAGGCCGTGCCATGTTAGATGCTCAGATTACGGATCAAGATGAAGGAGCTCTCAAGCATCTTACAGACATTAAATGGTCCAGGATACAGAAAGGGTTCAGACTTGAATTCTATTTTCACACTAACCCTTTCTTTGAAAACCCTGTCTTGACCAAGACGTATCACATGAATGATGAAGATGAATTCTTTCTAGAATCTGCAATAGGGATAGAGATTGCATGGCATCCAGAAAAATGCTTGACACAGAAGCTCAATAAGATATCTGGGAAGGGATCAAAGAAAGCTAAGCCAATGACTAATAAAAGCTTCTTTGGCTTTTTCAGTCCACTTGAAATCCCAAAGAACCTAAAAGATATGAAAGATACTGTTGAGGTCATAAATCTGAAAGACGAGATGGAAAGGGATTGTTTCTTTGGGTTGACCATTCGAGATGAGATCATCCCACGTGCCGTTTCATGGTTTATGGGGGAGGCTGGACTGGAGGAGAATACCCAAATATCTGCACAGCACTCCAATTTCCTCAAGAATCTATCAAAAAAATGTCAGGGAGTGTGTTGGAAGTCTAAGATTGATACAGGTACTATTCTCCCTTACTCTGAAACTAGAAATTGTGCCCGCGCTTTGCCGCAGAACATACTCTTATCAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

323

Amino Acids

36.62

Weight (kDa)

8.49

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	49 - 90	2.5e-12	zf-MYND-like zinc finger, mRNA-binding
NAP	PF00956	94 - 263	5.2e-49	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	1 cut(s)	936
AciI	CCGC	4 cut(s)	162, 216, 934, 944
AclWI	GGATC	2 cut(s)	360, 598
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	425, 500
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	764
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	4 cut(s)	196, 425, 455, 650
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	8 cut(s)	25, 92, 199, 255, 368, 568, 602, 624
AluI	AGCT	8 cut(s)	25, 92, 199, 255, 368, 568, 602, 624
Alw21I	GWGCWC	2 cut(s)	148, 370
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	360, 598
AoxI	GGCC	3 cut(s)	11, 120, 322
ApoI	RAATTY	2 cut(s)	425, 500
Asp700I	GAANNNNTTC	2 cut(s)	413, 504
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	2 cut(s)	12, 396
AvaII	GGWCC	1 cut(s)	396
AxyI	CCTNAGG	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	204
BbrPI	CACGTG	1 cut(s)	764
Bbv12I	GWGCWC	2 cut(s)	148, 370
BccI	CCATC	1 cut(s)	706
BceAI	ACGGC	2 cut(s)	309, 752
BciT130I	CCWGG	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	3 cut(s)	66, 509, 921
BfmI	CTRYAG	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	216, 944
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	2 cut(s)	217, 945
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	12, 396
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	4 cut(s)	202, 328, 385, 550
BpmI	CTGGAG	1 cut(s)	818
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	356, 824
BsaAI	YACGTR	1 cut(s)	764
BsaHI	GRCGYC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	801
Bse21I	CCTNAGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	541, 756
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMII	CTCAG	3 cut(s)	89, 242, 356
BseNI	ACTGG	1 cut(s)	801
BseRI	GAGGAG	3 cut(s)	64, 67, 815
BseSI	GKGCMC	1 cut(s)	934
BsgI	GTGCAG	2 cut(s)	208, 804
Bsh1236I	CGCG	1 cut(s)	936
BshFI	GGCC	3 cut(s)	13, 122, 324
BsiHKAI	GWGCWC	2 cut(s)	148, 370
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	13, 122, 324
Bsp1286I	GDGCHC	3 cut(s)	148, 370, 934
Bsp143I	GATC	4 cut(s)	114, 352, 590, 753
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	4 cut(s)	162, 216, 934, 944
BspANI	GGCC	3 cut(s)	13, 122, 324
BspCNI	CTCAG	3 cut(s)	90, 241, 355
BspFNI	CGCG	1 cut(s)	936
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	360, 598
BsrI	ACTGG	1 cut(s)	801
BssMI	GATC	4 cut(s)	114, 352, 590, 753
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	685
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	94, 257, 934
BstDEI	CTNAG	5 cut(s)	98, 228, 342, 603, 882
BstF5I	GGATG	2 cut(s)	541, 756
BstFNI	CGCG	1 cut(s)	936
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	4 cut(s)	117, 355, 593, 756
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	114, 352, 590, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 128, 630
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	934
BstUI	CGCG	1 cut(s)	936
BstXI	CCANNNNNNTGG	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	13, 122, 324
BtsCI	GGATG	2 cut(s)	541, 756
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	94, 257, 934
CfoI	GCGC	1 cut(s)	938
Cfr13I	GGNCC	2 cut(s)	12, 396
Csp6I	GTAC	1 cut(s)	897
CviAII	CATG	5 cut(s)	118, 331, 484, 537, 774
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	5 cut(s)	98, 228, 342, 603, 882
DpnI	GATC	4 cut(s)	116, 354, 592, 755
DpnII	GATC	4 cut(s)	114, 352, 590, 753
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	764
Eco81I	CCTNAGG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	368
EcoRI	GAATTC	2 cut(s)	425, 500
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	370
FaeI	CATG	5 cut(s)	121, 334, 487, 540, 777
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	117, 330, 483, 536, 773
FauI	CCCGC	2 cut(s)	169, 941
Fnu4HI	GCNGC	2 cut(s)	216, 944
FokI	GGATG	2 cut(s)	528, 743
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	216, 944
FspBI	CTAG	3 cut(s)	66, 509, 921
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	2 cut(s)	216, 944
GsuI	CTGGAG	1 cut(s)	818
HaeIII	GGCC	3 cut(s)	13, 122, 324
HhaI	GCGC	1 cut(s)	938
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	5 cut(s)	121, 334, 487, 540, 777
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HindIII	AAGCTT	2 cut(s)	197, 622
HinfI	GANTC	2 cut(s)	512, 844
Hpy166II	GTNNAC	2 cut(s)	644, 738
Hpy188I	TCNGA	4 cut(s)	345, 419, 702, 916
Hpy188III	TCNNGA	8 cut(s)	206, 230, 356, 466, 509, 545, 746, 841
Hpy8I	GTNNAC	2 cut(s)	644, 738
Hpy99I	CGWCG	2 cut(s)	128, 131
HpyAV	CCTTC	2 cut(s)	356, 580
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	3 cut(s)	126, 476, 763
HpyCH4V	TGCA	7 cut(s)	153, 225, 259, 281, 518, 536, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 128, 630
HpyF3I	CTNAG	5 cut(s)	98, 228, 342, 603, 882
HpySE526I	ACGT	3 cut(s)	126, 476, 763
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	121, 334, 487, 540, 777
HspAI	GCGC	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	114, 352, 590, 753
LmnI	GCTCC	3 cut(s)	22, 252, 365
LweI	GCATC	4 cut(s)	202, 328, 385, 550
MaeI	CTAG	3 cut(s)	66, 509, 921
MaeII	ACGT	3 cut(s)	126, 476, 763
MalI	GATC	4 cut(s)	116, 354, 592, 755
MboI	GATC	4 cut(s)	114, 352, 590, 753
MboII	GAAGA	3 cut(s)	161, 221, 506
MhlI	GDGCHC	3 cut(s)	148, 370, 934
MluCI	AATT	7 cut(s)	191, 298, 425, 500, 832, 925, 967
MmeI	TCCRAC	1 cut(s)	854
MroXI	GAANNNNTTC	2 cut(s)	413, 504
MseI	TTAA	3 cut(s)	240, 317, 390
MslI	CAYNNNNRTG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	936
MwoI	GCNNNNNNNGC	3 cut(s)	119, 128, 630
NdeII	GATC	4 cut(s)	114, 352, 590, 753
NlaIII	CATG	5 cut(s)	121, 334, 487, 540, 777
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	413, 504
PfeI	GAWTC	2 cut(s)	512, 844
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	217, 945
PmaCI	CACGTG	1 cut(s)	764
PmlI	CACGTG	1 cut(s)	764
Ppu21I	YACGTR	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	398
PspCI	CACGTG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	12, 396
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	240, 317, 390
SatI	GCNGC	2 cut(s)	216, 944
Sau3AI	GATC	4 cut(s)	114, 352, 590, 753
Sau96I	GGNCC	2 cut(s)	12, 396
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	3 cut(s)	148, 370, 934
SfaNI	GCATC	4 cut(s)	202, 328, 385, 550
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	371, 839
SmoI	CTYRAG	2 cut(s)	371, 839
Sse9I	AATT	7 cut(s)	191, 298, 425, 500, 832, 925, 967
SsiI	CCGC	4 cut(s)	162, 216, 934, 944
SspMI	CTAG	3 cut(s)	66, 509, 921
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	3 cut(s)	129, 479, 766
TaqI	TCGA	1 cut(s)	745
TasI	AATT	7 cut(s)	191, 298, 425, 500, 832, 925, 967
TauI	GCSGC	2 cut(s)	218, 946
TfiI	GAWTC	2 cut(s)	512, 844
Tru1I	TTAA	3 cut(s)	240, 317, 390
Tru9I	TTAA	3 cut(s)	240, 317, 390
TscAI	CASTG	1 cut(s)	179
TspDTI	ATGAA	6 cut(s)	375, 500, 507, 513, 689, 762
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	425, 500
XbaI	TCTAGA	1 cut(s)	508
XmnI	GAANNNNTTC	2 cut(s)	413, 504
XspI	CTAG	3 cut(s)	66, 509, 921
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.