Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Reverse (-)

10856522 .. 10857886

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACACCATGTTGTTGCTCTTTCACTTATTCAATCTCCATATCCAAATTCATCTCAGAAAGTCCACACCTCTCCATACTAGAAAACCAATGCACCTCCATGAAAGACCTTCAAAAGATCCACGCCCACCTCCTCAAAACCAGCCTAGCCAACGACACCATCGCCGCCAGCCGCGTATTGGCCTTTTCTGCCTCCCCACCTGGAGACACTACGCCTATATGGTTTTCAGACACATCGAAGAACCAAACCCCTTCATTTGGAACACCATCATTAGAGGCTTCTCCGAAAGCCAAAACCCAAAAACTGCAATCTCTCTTTTCACTGAAATCAAGAGAACTGTTTGATGAGGACTTGGAATGTGACAATGTTGCATGGTACTCTATGGTCATGGGCCTTTCCAAATGTGGTGAGGTGAGTGAATCCAAGAGGCTGTTTGATAAAATGCCTTCGAGGAATTCGGTTTCTTGGAATTCGATGATTAGTGGATCTGTTAGGAATGGGAAGTATGCAGAGGCATTGGATCTTTTCGGCGAAATGCAGGAGAGGATTAGGCCTAGTGAGTTTACAATGGTGAGCTTGTTGAATGCTTCAGCTCAGCTGGGAGCAATTGGACAAGGGGAGTGGATTCTTGAACACATAAAGAAAAATGGGATTGAAACTAATGGAATTGTTGTCACAGCGATTATAAACATGTACTGCAAATGTGGGAGCATCGAAGAGGCTATTCATGTTTTTTATGCAGCCCCCAAAAAAAGGTTGTCCTGTTGGAACACCATGATCATGGGTCTAGCGGTAAATGGTTGTGAGGAAGAAGCGATTGAGCTGTTCTCGAGGCTTGAATCTTCGAAATTTATACCAGATGGTGTCAGTTTTCTTGGCGTCGTAACAGCATACTATAGTTCCATGGTTAATGTGTTAGGCAGGGCGGGACTTCTTGAAGATGCAGAAGAGATTATAGATAACGTGCCGGTAAAAGCAGACGCCATTATTTGGGGGTCATTGCTCTCGCCTTGTAGGAAGCACAAAAACATTAAGATGGCAAAACAAGCAGCAAAGCGTGTGATCGAATTGGATCCAAATGACAGCTGCGGTTATGTGCTTATGTCGAATATCTATGCTGCTTCCAGCCAATTTCACGAAGCAATAAAGGAAAGGCTTTCGACGAAGGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

392

Amino Acids

43.14

Weight (kDa)

6.04

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	151 - 196	6.4e-10	PPR repeat family
PPR	PF01535	154 - 182	1.2e-08	PPR repeat
PPR	PF01535	255 - 283	5.4e-06	PPR repeat
E_motif	PF20431	341 - 381	1.2e-07	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	990
AccII	CGCG	1 cut(s)	174
AciI	CCGC	5 cut(s)	165, 172, 791, 926, 1089
AclWI	GGATC	5 cut(s)	112, 493, 528, 1067, 1080
AcsI	RAATTY	4 cut(s)	47, 454, 469, 848
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	2 cut(s)	879, 981
AfaI	GTAC	2 cut(s)	377, 695
AfiI	CCNNNNNNNGG	4 cut(s)	178, 257, 753, 990
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	7 cut(s)	33, 113, 583, 632, 656, 839, 938
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	5 cut(s)	576, 593, 598, 823, 1086
AluI	AGCT	5 cut(s)	576, 593, 598, 823, 1086
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	5 cut(s)	112, 493, 528, 1067, 1080
Ama87I	CYCGRG	1 cut(s)	829
AoxI	GGCC	3 cut(s)	180, 391, 551
ApeKI	GCWGC	4 cut(s)	740, 1049, 1086, 1118
ApoI	RAATTY	4 cut(s)	47, 454, 469, 848
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	419, 424, 583
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	829
BamHI	GGATCC	1 cut(s)	1072
BbvI	GCAGC	4 cut(s)	752, 1061, 1073, 1105
BccI	CCATC	4 cut(s)	167, 274, 854, 1030
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	4 cut(s)	80, 146, 555, 788
BfmI	CTRYAG	1 cut(s)	895
BisI	GCNGC	6 cut(s)	165, 172, 741, 1050, 1087, 1119
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	6 cut(s)	166, 173, 742, 1051, 1088, 1120
Bme1390I	CCNGG	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	829
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	1074
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	720, 931
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BpmI	CTGGAG	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	845
BsaHI	GRCGYC	2 cut(s)	879, 981
BsaJI	CCNNGG	1 cut(s)	903
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 257, 753, 990
Bse118I	RCCGGY	1 cut(s)	967
Bse3DI	GCAATG	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	903
BseLI	CCNNNNNNNGG	4 cut(s)	178, 257, 753, 990
BseMI	GCAATG	1 cut(s)	998
BseMII	CTCAG	2 cut(s)	69, 608
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	752, 1061, 1073, 1105
BseYI	CCCAGC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	182, 393, 553
BsiHKCI	CYCGRG	1 cut(s)	829
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	4 cut(s)	178, 257, 753, 990
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	182, 393, 553
BsoBI	CYCGRG	1 cut(s)	829
Bsp119I	TTCGAA	1 cut(s)	845
Bsp143I	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	5 cut(s)	165, 172, 791, 926, 1089
BspANI	GGCC	3 cut(s)	182, 393, 553
BspCNI	CTCAG	2 cut(s)	68, 607
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	1074
BspPI	GGATC	5 cut(s)	112, 493, 528, 1067, 1080
BspT104I	TTCGAA	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	998
BsrFI	RCCGGY	1 cut(s)	967
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	1 cut(s)	903
BssMI	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
BssNI	GRCGYC	2 cut(s)	879, 981
BssT1I	CCWWGG	1 cut(s)	903
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	2 cut(s)	711, 942
BstACI	GRCGYC	2 cut(s)	879, 981
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	55, 594
BstDSI	CCRYGG	1 cut(s)	903
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	6 cut(s)	120, 488, 523, 780, 1065, 1075
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 1046
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	895
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	752, 1061, 1073, 1105
BstX2I	RGATCY	4 cut(s)	117, 485, 520, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	781
BstYI	RGATCY	4 cut(s)	117, 485, 520, 1072
BsuRI	GGCC	3 cut(s)	182, 393, 553
BtgI	CCRYGG	1 cut(s)	903
BtgZI	GCGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	391
CseI	GACGC	2 cut(s)	868, 989
Csp6I	GTAC	2 cut(s)	376, 694
CspCI	CAANNNNNGTGG	2 cut(s)	602, 637
CviAII	CATG	9 cut(s)	9, 100, 372, 388, 691, 728, 775, 781, 904
CviQI	GTAC	2 cut(s)	376, 694
DdeI	CTNAG	2 cut(s)	55, 594
DpnI	GATC	6 cut(s)	119, 487, 522, 779, 1064, 1074
DpnII	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
Eam1104I	CTCTTC	2 cut(s)	711, 942
EarI	CTCTTC	2 cut(s)	711, 942
Eco130I	CCWWGG	1 cut(s)	903
Eco147I	AGGCCT	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	829
EcoRI	GAATTC	2 cut(s)	454, 469
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	903
FaeI	CATG	9 cut(s)	12, 103, 375, 391, 694, 731, 778, 784, 907
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	9 cut(s)	8, 99, 371, 387, 690, 727, 774, 780, 903
FauI	CCCGC	1 cut(s)	919
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	6 cut(s)	165, 172, 741, 1050, 1087, 1119
Fsp4HI	GCNGC	6 cut(s)	165, 172, 741, 1050, 1087, 1119
FspBI	CTAG	4 cut(s)	80, 146, 555, 788
GluI	GCNGC	6 cut(s)	165, 172, 741, 1050, 1087, 1119
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	182, 393, 553
HapII	CCGG	1 cut(s)	968
HgaI	GACGC	2 cut(s)	868, 989
Hin1I	GRCGYC	2 cut(s)	879, 981
Hin1II	CATG	9 cut(s)	12, 103, 375, 391, 694, 731, 778, 784, 907
HinfI	GANTC	3 cut(s)	419, 625, 839
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	3 cut(s)	419, 424, 583
Hpy166II	GTNNAC	2 cut(s)	65, 564
Hpy188I	TCNGA	3 cut(s)	58, 229, 285
Hpy188III	TCNNGA	5 cut(s)	330, 629, 829, 935, 1136
Hpy8I	GTNNAC	2 cut(s)	65, 564
Hpy99I	CGWCG	2 cut(s)	884, 1165
HpyAV	CCTTC	4 cut(s)	119, 261, 456, 1159
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	963
HpyCH4V	TGCA	8 cut(s)	93, 307, 371, 509, 538, 699, 740, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 1046
HpyF3I	CTNAG	2 cut(s)	55, 594
HpySE526I	ACGT	1 cut(s)	963
Hsp92I	GRCGYC	2 cut(s)	879, 981
Hsp92II	CATG	9 cut(s)	12, 103, 375, 391, 694, 731, 778, 784, 907
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
LmnI	GCTCC	3 cut(s)	602, 708, 1168
Lsp1109I	GCAGC	4 cut(s)	752, 1061, 1073, 1105
LweI	GCATC	2 cut(s)	720, 931
MaeI	CTAG	4 cut(s)	80, 146, 555, 788
MaeII	ACGT	1 cut(s)	963
MaeIII	GTNAC	3 cut(s)	359, 673, 883
MalI	GATC	6 cut(s)	119, 487, 522, 779, 1064, 1074
MboI	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
MboII	GAAGA	6 cut(s)	250, 728, 821, 834, 950, 959
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	4 cut(s)	117, 485, 520, 1072
MluCI	AATT	8 cut(s)	47, 454, 469, 606, 666, 848, 1067, 1130
MmeI	TCCRAC	1 cut(s)	746
MseI	TTAA	2 cut(s)	909, 1032
MslI	CAYNNNNRTG	3 cut(s)	98, 779, 1034
MspA1I	CMGCKG	2 cut(s)	598, 1086
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	188, 1046
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
NlaIII	CATG	9 cut(s)	12, 103, 375, 391, 694, 731, 778, 784, 907
NlaIV	GGNNCC	1 cut(s)	1074
NmuCI	GTSAC	2 cut(s)	359, 673
NspI	RCATGY	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	829
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	690
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	419, 625, 839
PflMI	CCANNNNNTGG	1 cut(s)	990
PkrI	GCNGC	6 cut(s)	166, 173, 742, 1051, 1088, 1120
PscI	ACATGT	1 cut(s)	690
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	1074
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	4 cut(s)	117, 485, 520, 1072
PvuII	CAGCTG	2 cut(s)	598, 1086
RsaI	GTAC	2 cut(s)	377, 695
RsaNI	GTAC	2 cut(s)	376, 694
RseI	CAYNNNNRTG	3 cut(s)	98, 779, 1034
SaqAI	TTAA	2 cut(s)	909, 1032
SatI	GCNGC	6 cut(s)	165, 172, 741, 1050, 1087, 1119
Sau3AI	GATC	6 cut(s)	117, 485, 520, 777, 1062, 1072
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	720, 931
SfcI	CTRYAG	1 cut(s)	895
Sfr274I	CTCGAG	1 cut(s)	829
SfuI	TTCGAA	1 cut(s)	845
SlaI	CTCGAG	1 cut(s)	829
SmiMI	CAYNNNNRTG	3 cut(s)	98, 779, 1034
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	8 cut(s)	47, 454, 469, 606, 666, 848, 1067, 1130
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	5 cut(s)	165, 172, 791, 926, 1089
SspMI	CTAG	4 cut(s)	80, 146, 555, 788
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	903
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	966
TaqI	TCGA	9 cut(s)	236, 449, 473, 714, 830, 845, 1065, 1106, 1160
TasI	AATT	8 cut(s)	47, 454, 469, 606, 666, 848, 1067, 1130
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	167, 174
TfiI	GAWTC	3 cut(s)	419, 625, 839
Tru1I	TTAA	2 cut(s)	909, 1032
Tru9I	TTAA	2 cut(s)	909, 1032
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	2 cut(s)	359, 673
TseI	GCWGC	4 cut(s)	740, 1049, 1086, 1118
Tsp45I	GTSAC	2 cut(s)	359, 673
TspDTI	ATGAA	4 cut(s)	40, 116, 243, 716
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	990
XapI	RAATTY	4 cut(s)	47, 454, 469, 848
XceI	RCATGY	1 cut(s)	694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	829
XspI	CTAG	4 cut(s)	80, 146, 555, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.