Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Forward (+)

69200880 .. 69202552

Gene Structure 1673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGACACCATGTTGTTGCTCTTTCACTTCTTCAACCTCAATATCCAAATTCATCTCAGACAAACCACACCTCTCCATGCTAGAAAACCAATGCACCAACATGAAAGACCTCCAGAAAATCCATGCCCACCTCATCAAAACTGGCCTAGCCAATGACACAGTTGCCGCCAGCCGTGTCTTGGCCTTTTGTGCCTCCCCAGCCGGAAACATCAACTATGCCTACATGGTTTTCAGACATATCCAGAACCCAAACCTCTTCATCTGGAACACCATCATTAGAGGTTTCTCTAACAGCTCAAACCCTGAAGCTGCCATCTCTCTTTTCATTGACATGTTGGTCACTTCAGCTATCCAGCCACAAAGGTTGACTTACCCTTCAGTTTTCAAGGCTTACGCTCAAGTGGGTCTTGCCCGTGATGGAGCTCAGCTTCATGGGAGAGTTGTGAAGTTGGGTCTTGAAAGGGACCAGTTTATAAGGAACACCATCATACGTATGTACTCAAACTGTGGCTTTTTGAGTGAAGCAAAAAGAGTGTTTGAAGAAGAGTTGGAATTTGACATTGTTGCATGGAATTCTATGGTAATGGGCCTTTCCAAATGTGGTGAAGTCAGTGAATCTAGAAGGCTGTTTGATAAAATGCTTCGAAGGAATTCGATTTCGTGGAATTCGATGATTGGTGGATATGTTAGGAATGGAATGTACACAGAAGCTTTGGATCTTTTTGGTGAAATGCAGAAGAAGAAGATAAAGCCTAGTGAATTTACAATGGTGAGCCTGTTGAATGCTTCAGCTCAGTTAGGAGCAATTAGACAAGGGGAGTGGATTCATGAATATATAAGGAAAAATCACATTCAACTCAATCCCATTGTTGTAACAGCAATCATCAATATGTATTGCAAGTGTGGAAGCATTGAAAAAGCTGTTCAGGTGTTTGAGGCAGCTCCTAGAACAGGGTTATCTTGTTGGAACTCCATTATTATGGGGTTAGCAACTAATGGTTGTGAAGAAGAAGCAATCGAGCTATTCTCAAGGCTTGAATCTTCGAGTTTTGTACCCGATGATGTCAGTTTTCTTGGTGTTCTAACTGCATGTAGTCACTCGGGGATGGTGGAGAAAGCAAGGAAGTATTTTTCAGTAATGAGAGAAACAAATAAGATTGCACCATCCATTAAGCACTATAGTTGCATGGTTGATGTGTTAGGCAGAGCTGGACTTCTTGAAGAAGCTGAGAAGCTCATAGATGGTATGCCAATAGAAGCCGACGCAATTATTTGGGGTTCTTTGCTGTCATCTTGTAGGAAGCACAGAGACATTGAGATGGCTAAGCGGGCAGCAAAGCATGTTACTGAGTTGGATCCAAGTGACAGTTGTGGTTATGTGTTAATGTCAAATGTTTATGCTGCCTCTAGTCAATTTGAGGAAGCAATGCAGGAAAGGCTTTCAATGAGAGAGCAGAAGATTGAGAAAGAACCGGGATGTAGTTTGATCGAAGTGGATGGAGAGGTTCATGAGTTTATAGCTGGTGGAAGGCTGCATCAGAAAGCCCCAGAGATTTATTCACTATTGAATGGATTGGGATTTATGTTACAAAGAAATGCAATAGGCTATGATGAACTTGCTGCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

542

Amino Acids

60.58

Weight (kDa)

6.52

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 132	7.6e-07	PPR repeat family
PPR	PF01535	188 - 217	1.5e-06	PPR repeat
PPR_2	PF13041	217 - 262	5.9e-14	PPR repeat family
PPR	PF01535	219 - 249	2.7e-10	PPR repeat
E_motif	PF20431	435 - 497	2e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	335
AciI	CCGC	2 cut(s)	165, 1327
AclWI	GGATC	3 cut(s)	723, 1349, 1362
AcsI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 758
AcuI	CTGAAG	4 cut(s)	324, 327, 360, 771
AfaI	GTAC	3 cut(s)	497, 701, 1053
AfiI	CCNNNNNNNGG	2 cut(s)	178, 950
AflIII	ACRYGT	1 cut(s)	330
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	1302
AlwI	GGATC	3 cut(s)	723, 1349, 1362
Ama87I	CYCGRG	1 cut(s)	1099
AoxI	GGCC	3 cut(s)	142, 180, 586
ApeKI	GCWGC	6 cut(s)	308, 938, 1331, 1400, 1531, 1619
ApoI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 758
Asp700I	GAANNNNTTC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	463, 586
AsuC2I	CCSGG	1 cut(s)	1473
AsuHPI	GGTGA	3 cut(s)	614, 737, 781
AsuII	TTCGAA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	1099
AvaII	GGWCC	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	1354
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	6 cut(s)	295, 950, 1343, 1387, 1518, 1606
BccI	CCATC	9 cut(s)	278, 320, 410, 491, 1099, 1171, 1235, 1312, 1490
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	1473
BcoDI	GTCTC	1 cut(s)	1302
BfaI	CTAG	6 cut(s)	80, 146, 618, 753, 945, 1407
BfmI	CTRYAG	1 cut(s)	1177
BisI	GCNGC	7 cut(s)	165, 309, 939, 1332, 1401, 1532, 1620
BlpI	GCTNAGC	2 cut(s)	423, 1323
BlsI	GCNGC	7 cut(s)	166, 310, 940, 1333, 1402, 1533, 1621
Bme1390I	CCNGG	1 cut(s)	1473
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	1099
BmgT120I	GGNCC	2 cut(s)	463, 586
BmiI	GGNNCC	2 cut(s)	464, 1356
BmrFI	CCNGG	1 cut(s)	1473
BmsI	GCATC	1 cut(s)	1543
BplI	GAGNNNNNCTC	2 cut(s)	1010, 1042
BpmI	CTGGAG	1 cut(s)	95
Bpu1102I	GCTNAGC	2 cut(s)	423, 1323
Bpu14I	TTCGAA	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	381, 1012
BpuMI	CCSGG	1 cut(s)	1473
BsaAI	YACGTR	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 950
Bse1I	ACTGG	2 cut(s)	145, 466
Bse3DI	GCAATG	1 cut(s)	1431
BseGI	GGATG	4 cut(s)	1110, 1163, 1481, 1501
BseLI	CCNNNNNNNGG	2 cut(s)	178, 950
BseMI	GCAATG	1 cut(s)	1431
BseMII	CTCAG	5 cut(s)	69, 437, 806, 1218, 1338
BseNI	ACTGG	2 cut(s)	145, 466
BseXI	GCAGC	6 cut(s)	295, 950, 1343, 1387, 1518, 1606
BseYI	CCCAGC	1 cut(s)	196
BshFI	GGCC	3 cut(s)	144, 182, 588
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	1099
BsiSI	CCGG	2 cut(s)	201, 1472
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	178, 950
BsmAI	GTCTC	1 cut(s)	1302
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	144, 182, 588
BsoBI	CYCGRG	1 cut(s)	1099
Bsp119I	TTCGAA	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	715, 1354, 1485
Bsp1720I	GCTNAGC	2 cut(s)	423, 1323
BspACI	CCGC	2 cut(s)	165, 1327
BspANI	GGCC	3 cut(s)	144, 182, 588
BspCNI	CTCAG	5 cut(s)	68, 436, 805, 1219, 1339
BspHI	TCATGA	2 cut(s)	826, 1507
BspLI	GGNNCC	2 cut(s)	464, 1356
BspPI	GGATC	3 cut(s)	723, 1349, 1362
BspT104I	TTCGAA	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	1431
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	145, 466
BssMI	GATC	3 cut(s)	715, 1354, 1485
Bst4CI	ACNGT	3 cut(s)	160, 506, 1367
Bst6I	CTCTTC	2 cut(s)	260, 537
BstAUI	TGTACA	1 cut(s)	699
BstBAI	YACGTR	1 cut(s)	491
BstBI	TTCGAA	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	169, 1329
BstDEI	CTNAG	6 cut(s)	55, 423, 792, 1227, 1323, 1347
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstF5I	GGATG	4 cut(s)	1110, 1163, 1481, 1501
BstKTI	GATC	3 cut(s)	718, 1357, 1488
BstMAI	GTCTC	1 cut(s)	1302
BstMBI	GATC	3 cut(s)	715, 1354, 1485
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 197, 1328, 1435
BstNSI	RCATGY	3 cut(s)	334, 1092, 1343
BstSCI	CCNGG	1 cut(s)	1471
BstSFI	CTRYAG	1 cut(s)	1177
BstSNI	TACGTA	1 cut(s)	491
BstV1I	GCAGC	6 cut(s)	295, 950, 1343, 1387, 1518, 1606
BstX2I	RGATCY	2 cut(s)	715, 1354
BstXI	CCANNNNNNTGG	1 cut(s)	979
BstYI	RGATCY	2 cut(s)	715, 1354
BsuRI	GGCC	3 cut(s)	144, 182, 588
BtsCI	GGATG	4 cut(s)	1110, 1163, 1481, 1501
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	169, 1329
CciI	TCATGA	2 cut(s)	826, 1507
Cfr13I	GGNCC	2 cut(s)	463, 586
CseI	GACGC	1 cut(s)	1271
Csp6I	GTAC	3 cut(s)	496, 700, 1052
CspCI	CAANNNNNGTGG	4 cut(s)	345, 380, 800, 835
CviQI	GTAC	3 cut(s)	496, 700, 1052
DdeI	CTNAG	6 cut(s)	55, 423, 792, 1227, 1323, 1347
DpnI	GATC	3 cut(s)	717, 1356, 1487
DpnII	GATC	3 cut(s)	715, 1354, 1485
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	260, 537
EarI	CTCTTC	2 cut(s)	260, 537
Ecl136II	GAGCTC	1 cut(s)	422
Eco105I	TACGTA	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	4 cut(s)	324, 327, 360, 771
Eco88I	CYCGRG	1 cut(s)	1099
EcoICRI	GAGCTC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoRI	GAATTC	3 cut(s)	571, 649, 664
EcoT38I	GRGCYC	1 cut(s)	424
FalI	AAGNNNNNCTT	4 cut(s)	352, 384, 390, 422
FaqI	GGGAC	1 cut(s)	476
FauI	CCCGC	1 cut(s)	1320
Fnu4HI	GCNGC	7 cut(s)	165, 309, 939, 1332, 1401, 1532, 1620
FokI	GGATG	4 cut(s)	1117, 1150, 1488, 1508
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	165, 309, 939, 1332, 1401, 1532, 1620
FspBI	CTAG	6 cut(s)	80, 146, 618, 753, 945, 1407
GluI	GCNGC	7 cut(s)	165, 309, 939, 1332, 1401, 1532, 1620
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	144, 182, 588
HapII	CCGG	2 cut(s)	201, 1472
HgaI	GACGC	1 cut(s)	1271
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	3 cut(s)	614, 823, 1037
HpaII	CCGG	2 cut(s)	201, 1472
HphI	GGTGA	3 cut(s)	614, 737, 781
Hpy166II	GTNNAC	2 cut(s)	366, 702
Hpy188I	TCNGA	3 cut(s)	58, 233, 1539
Hpy188III	TCNNGA	8 cut(s)	112, 241, 262, 455, 618, 827, 1217, 1508
Hpy8I	GTNNAC	2 cut(s)	366, 702
Hpy99I	CGWCG	1 cut(s)	1265
HpyAV	CCTTC	4 cut(s)	384, 615, 639, 1521
HpyCH4III	ACNGT	3 cut(s)	160, 506, 1367
HpyCH4IV	ACGT	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 197, 1328, 1435
HpyF3I	CTNAG	6 cut(s)	55, 423, 792, 1227, 1323, 1347
HpySE526I	ACGT	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	715, 1354, 1485
LmnI	GCTCC	3 cut(s)	419, 800, 946
Lsp1109I	GCAGC	6 cut(s)	295, 950, 1343, 1387, 1518, 1606
LweI	GCATC	1 cut(s)	1543
MaeI	CTAG	6 cut(s)	80, 146, 618, 753, 945, 1407
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	6 cut(s)	337, 871, 1094, 1342, 1361, 1584
MalI	GATC	3 cut(s)	717, 1356, 1487
MboI	GATC	3 cut(s)	715, 1354, 1485
MflI	RGATCY	2 cut(s)	715, 1354
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	9 cut(s)	47, 551, 571, 649, 664, 758, 804, 1266, 1412
MmeI	TCCRAC	3 cut(s)	528, 944, 1332
MroXI	GAANNNNTTC	1 cut(s)	649
MseI	TTAA	3 cut(s)	1170, 1382, 1627
MslI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 887, 977, 1316
MspI	CCGG	2 cut(s)	201, 1472
MspR9I	CCNGG	1 cut(s)	1473
Mva1269I	GAATGC	1 cut(s)	787
MwoI	GCNNNNNNNGC	4 cut(s)	188, 197, 1328, 1435
NciI	CCSGG	1 cut(s)	1473
NdeII	GATC	3 cut(s)	715, 1354, 1485
NlaIV	GGNNCC	2 cut(s)	464, 1356
NmuCI	GTSAC	3 cut(s)	337, 1094, 1361
NspI	RCATGY	3 cut(s)	334, 1092, 1343
NspV	TTCGAA	1 cut(s)	643
PagI	TCATGA	2 cut(s)	826, 1507
PciI	ACATGT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PctI	GAATGC	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	614, 823, 1037
PkrI	GCNGC	7 cut(s)	166, 310, 940, 1333, 1402, 1533, 1621
Ppu21I	YACGTR	1 cut(s)	491
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	464, 1356
PspPI	GGNCC	2 cut(s)	463, 586
PsuI	RGATCY	2 cut(s)	715, 1354
RsaI	GTAC	3 cut(s)	497, 701, 1053
RsaNI	GTAC	3 cut(s)	496, 700, 1052
RseI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 887, 977, 1316
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	1170, 1382, 1627
SatI	GCNGC	7 cut(s)	165, 309, 939, 1332, 1401, 1532, 1620
Sau3AI	GATC	3 cut(s)	715, 1354, 1485
Sau96I	GGNCC	2 cut(s)	463, 586
ScrFI	CCNGG	1 cut(s)	1473
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	1543
SfcI	CTRYAG	1 cut(s)	1177
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	6 cut(s)	98, 329, 491, 887, 977, 1316
SmlI	CTYRAG	2 cut(s)	396, 1027
SmoI	CTYRAG	2 cut(s)	396, 1027
SnaBI	TACGTA	1 cut(s)	491
Sse9I	AATT	9 cut(s)	47, 551, 571, 649, 664, 758, 804, 1266, 1412
SsiI	CCGC	2 cut(s)	165, 1327
SspMI	CTAG	6 cut(s)	80, 146, 618, 753, 945, 1407
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	1471
TaaI	ACNGT	3 cut(s)	160, 506, 1367
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	6 cut(s)	643, 653, 668, 1017, 1043, 1488
TasI	AATT	9 cut(s)	47, 551, 571, 649, 664, 758, 804, 1266, 1412
TatI	WGTACW	2 cut(s)	495, 699
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	3 cut(s)	614, 823, 1037
Tru1I	TTAA	3 cut(s)	1170, 1382, 1627
Tru9I	TTAA	3 cut(s)	1170, 1382, 1627
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	3 cut(s)	337, 1094, 1361
TseI	GCWGC	6 cut(s)	308, 938, 1331, 1400, 1531, 1619
Tsp45I	GTSAC	3 cut(s)	337, 1094, 1361
TspDTI	ATGAA	9 cut(s)	40, 116, 247, 313, 419, 815, 843, 1496, 1626
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	463
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	6 cut(s)	47, 551, 571, 649, 664, 758
XbaI	TCTAGA	1 cut(s)	617
XceI	RCATGY	3 cut(s)	334, 1092, 1343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	6 cut(s)	80, 146, 618, 753, 945, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.