Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Reverse (-)

17543600 .. 17545122

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTAGAAAACCAATGCACCAACATGAAAGACCTCCAGAAAATCCATGCCCACCTCATCAAAACTGGCCTAGCCAATGACACAGTTGCCGCCAGCCGTGTCTTGGCCTTTTGTGCCTCCCCAGCCGGAAACATCAACTATGCCTACATGGTTTTCAGACATATCCAGAACCCAAACCTCTTCATCTGGAACACCATCATTAGAGGATTCTCTAACAGCTCAAACCCTGAAGCTGCCATCTCTCTTTTCATTGACATGTTGGTCACTTCACCTATCCAGCCACAAAGGTTGACTTACCCTTCAGTTTTCAAGGCTTATGCTCAAGTGGGTCTTGCCCGTGATGGAGCTCAGCTTCATGGGAGAGTTTTGAAGTTGGGTGTTGAAAGGGACCAGTTTATAAGGAACACCATCATACATATGTACTCAAACTGTGGCTTTTTGAGTGAAGCAAGGAGAGTGTTTGATGAAGAGTTGGAATTTGACATTGTTGCATGGAATTCTATGGTAATGGGCCTTTCCAAATGTGGTGAGGTCAGTGAATCTAGAAGGCTGTTTGATAAAATGCCTCGAAGGAATTCGATTTCGTGGAATTCGATGATTGGTGGATATGTTAGGAATGGAATGTACACAGAAGCTTTGGATCTTTTTGGTGAAATGCAGAAGGAGAAGATAAAGCCTAGTGAATTTACAATGGAAGCAATGCAGGAAAGGCTTTCAATGAGAGAGCGGAAGATTGAGAAAGAACTGGGATGTAGTCTGATCGAAGTGGATGGAGAGGTTCATGAGTTTATAGCTGGTGGAAGGCTGCATCAGAAAGCCCCAGAGATTTATTCACTACTGAACGGATTGGGATTTATGTTACAAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

290

Amino Acids

33.0

Weight (kDa)

7.68

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	58 - 107	7.4e-07	PPR repeat family
PPR	PF01535	163 - 192	1.2e-06	PPR repeat
PPR_2	PF13041	192 - 233	2.2e-12	PPR repeat family
PPR	PF01535	194 - 223	1.8e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AasI	GACNNNNNNGTC	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	727
AciI	CCGC	2 cut(s)	90, 727
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
AcuI	CTGAAG	2 cut(s)	249, 285
AfaI	GTAC	2 cut(s)	422, 626
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	310, 370, 383, 717
AluBI	AGCT	6 cut(s)	219, 233, 347, 352, 635, 794
AluI	AGCT	6 cut(s)	219, 233, 347, 352, 635, 794
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	3 cut(s)	67, 105, 511
ApeKI	GCWGC	2 cut(s)	233, 805
ApoI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
Asp700I	GAANNNNTTC	1 cut(s)	574
AspS9I	GGNCC	2 cut(s)	388, 511
AsuHPI	GGTGA	3 cut(s)	261, 539, 662
AvaII	GGWCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	220, 792
BccI	CCATC	5 cut(s)	203, 245, 335, 416, 764
BceAI	ACGGC	1 cut(s)	81
BfaI	CTAG	4 cut(s)	5, 71, 543, 678
BisI	GCNGC	3 cut(s)	90, 234, 806
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	3 cut(s)	91, 235, 807
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 511
BmiI	GGNNCC	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	1 cut(s)	817
BmuI	ACTGGG	1 cut(s)	755
BpmI	CTGGAG	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	70, 391, 750
Bse3DI	GCAATG	1 cut(s)	705
BseGI	GGATG	2 cut(s)	755, 775
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	70, 391, 750
BseXI	GCAGC	2 cut(s)	220, 792
BseYI	CCCAGC	1 cut(s)	121
BshFI	GGCC	3 cut(s)	69, 107, 513
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	69, 107, 513
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	2 cut(s)	640, 759
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	90, 727
BspANI	GGCC	3 cut(s)	69, 107, 513
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	705
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	70, 391, 750
BssMI	GATC	2 cut(s)	640, 759
Bst4CI	ACNGT	2 cut(s)	85, 431
Bst6I	CTCTTC	2 cut(s)	185, 462
BstAUI	TGTACA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	755, 775
BstKTI	GATC	2 cut(s)	643, 762
BstMBI	GATC	2 cut(s)	640, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 709
BstNSI	RCATGY	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	220, 792
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	69, 107, 513
BtsCI	GGATG	2 cut(s)	755, 775
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	781
Cfr13I	GGNCC	2 cut(s)	388, 511
Csp6I	GTAC	2 cut(s)	421, 625
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	7 cut(s)	25, 47, 148, 256, 356, 492, 782
CviQI	GTAC	2 cut(s)	421, 625
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	642, 761
DpnII	GATC	2 cut(s)	640, 759
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	185, 462
EarI	CTCTTC	2 cut(s)	185, 462
Ecl136II	GAGCTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	249, 285
EcoICRI	GAGCTC	1 cut(s)	347
EcoRI	GAATTC	3 cut(s)	496, 574, 589
EcoT38I	GRGCYC	1 cut(s)	349
FaeI	CATG	7 cut(s)	28, 50, 151, 259, 359, 495, 785
FalI	AAGNNNNNCTT	4 cut(s)	277, 309, 315, 347
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	7 cut(s)	24, 46, 147, 255, 355, 491, 781
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	90, 234, 806
FokI	GGATG	2 cut(s)	762, 782
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	3 cut(s)	90, 234, 806
FspBI	CTAG	4 cut(s)	5, 71, 543, 678
GluI	GCNGC	3 cut(s)	90, 234, 806
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	69, 107, 513
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	7 cut(s)	28, 50, 151, 259, 359, 495, 785
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	2 cut(s)	207, 539
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	3 cut(s)	261, 539, 662
Hpy166II	GTNNAC	2 cut(s)	291, 627
Hpy188I	TCNGA	3 cut(s)	158, 759, 813
Hpy188III	TCNNGA	5 cut(s)	37, 166, 187, 543, 782
Hpy8I	GTNNAC	2 cut(s)	291, 627
HpyAV	CCTTC	5 cut(s)	309, 540, 564, 655, 795
HpyCH4III	ACNGT	2 cut(s)	85, 431
HpyCH4V	TGCA	5 cut(s)	18, 491, 658, 703, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 709
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	7 cut(s)	28, 50, 151, 259, 359, 495, 785
Kzo9I	GATC	2 cut(s)	640, 759
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	2 cut(s)	220, 792
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	4 cut(s)	5, 71, 543, 678
MaeIII	GTNAC	2 cut(s)	262, 858
MalI	GATC	2 cut(s)	642, 761
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	2 cut(s)	640, 759
MboII	GAAGA	4 cut(s)	172, 479, 679, 742
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	6 cut(s)	476, 496, 574, 589, 683, 868
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	8 cut(s)	44, 65, 127, 188, 197, 523, 576, 769
MroXI	GAANNNNTTC	1 cut(s)	574
MslI	CAYNNNNRTG	3 cut(s)	23, 254, 416
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 709
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	2 cut(s)	640, 759
NlaIII	CATG	7 cut(s)	28, 50, 151, 259, 359, 495, 785
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	259
PagI	TCATGA	1 cut(s)	781
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	207, 539
PkrI	GCNGC	3 cut(s)	91, 235, 807
PscI	ACATGT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	2 cut(s)	388, 511
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	2 cut(s)	422, 626
RsaNI	GTAC	2 cut(s)	421, 625
RseI	CAYNNNNRTG	3 cut(s)	23, 254, 416
SacI	GAGCTC	1 cut(s)	349
SatI	GCNGC	3 cut(s)	90, 234, 806
Sau3AI	GATC	2 cut(s)	640, 759
Sau96I	GGNCC	2 cut(s)	388, 511
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	817
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	3 cut(s)	23, 254, 416
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	6 cut(s)	476, 496, 574, 589, 683, 868
SsiI	CCGC	2 cut(s)	90, 727
SspMI	CTAG	4 cut(s)	5, 71, 543, 678
SstI	GAGCTC	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	85, 431
TaqI	TCGA	4 cut(s)	568, 578, 593, 762
TasI	AATT	6 cut(s)	476, 496, 574, 589, 683, 868
TatI	WGTACW	2 cut(s)	420, 624
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	207, 539
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	233, 805
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	6 cut(s)	41, 172, 238, 344, 480, 770
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	5 cut(s)	476, 496, 574, 589, 683
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	4 cut(s)	5, 71, 543, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.