Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Forward (+)

70713615 .. 70714669

Gene Structure 1055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG500700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAAGACCTCCAGAAAATCCATGCCCACCTCATCAAAACTGGCCTAGCCACTGACACAGTTGCCGCCAGCCGTGTCTTGGCCTTTTGTGCCTCCCCAGCCGGAAACATCAACTATGCCTACATGGTTTTCAGACATATCCAGAACCCAAACCTCTTCATCTGGAACACCATCATTAGAGGTTTCTCTAACAGCTCAAACCCTGAAGCTGCCATCTCTCTTTTCATTGACATGTTGGTCACTTCAGCTATCCAGCCTCAAAGGTTGACTTACCCTTCAGTTTTCAAGGCTTATGCTCAAGTGGGTCTTGCCCGTGATGGAGCTCAGCTTCATGGGAGAGTTGTGAAGTTGGGTCTTGAAAGGGACCAGTTTATAAGGAACACCATCATACATATGTACTCAAACTGTGGCTTTTTGAGTGAAGCAAAAAGAGTGTTTGAAGAAGAGTTGGAATTTAACATTGTTGCCTGGAATTCTATGGTAATGGGCCTTTCCAAATGTGGTGAAGTCAGTGAATCTAGAAGGCTGTTTGATAAAATGCTTCGAAGGAATTCGATTTCGTGGAATTCGATGATTGGTGGATATGTTAGGAATGGAATGTACACAGAAGCTTTGGATCTTTTTGGTGAAATGCAGAAGAAGAAGATAAAGCCTAGTGAATTTACAATGGTGAGCCTGTTGAATGCTTCAGCTCAGTTAGGAGCAATTAGACAAGGGGAGTGGATTCATGAATATATAAGGAAAAATCACATCCAACTCAATCCCATTGTTGTAACAGCAATCATCAATATGTATTGCAAGTGTGGAAGCATTGAAAAAGCTGTTCAGGTGTTTGAGGCAGCTCCTAGAACAGGGTTATCTTGTTGGAACTCCATTATTATGGGGTTAGCAACTAATGGTTGTGAAGAAGAAGCAATCGAGCTATTCTCAAGGCTTGAATCTTCGAGTTTTGTACCCGATGATTCACTCGGGGATGGTGGAGAAAGCAAGGAAGTATTTTTCAGTAATGAGAGAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

340

Amino Acids

38.15

Weight (kDa)

8.11

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	50 - 99	4e-07	PPR repeat family
PPR	PF01535	155 - 184	8.3e-07	PPR repeat
PPR_2	PF13041	184 - 229	3.1e-14	PPR repeat family
PPR	PF01535	186 - 216	1.5e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	236
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	624
AcsI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
AcuI	CTGAAG	4 cut(s)	225, 228, 261, 672
AfaI	GTAC	3 cut(s)	398, 602, 954
AfiI	CCNNNNNNNGG	2 cut(s)	79, 851
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	6 cut(s)	286, 359, 440, 682, 815, 938
AjnI	CCWGG	1 cut(s)	467
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	624
Ama87I	CYCGRG	1 cut(s)	968
AoxI	GGCC	3 cut(s)	43, 81, 487
ApeKI	GCWGC	2 cut(s)	209, 839
ApoI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
Asp700I	GAANNNNTTC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	364, 487
AsuHPI	GGTGA	3 cut(s)	515, 638, 682
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	196, 851
BccI	CCATC	5 cut(s)	179, 221, 311, 392, 968
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	469
BfaI	CTAG	4 cut(s)	47, 519, 654, 846
BisI	GCNGC	3 cut(s)	66, 210, 840
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	3 cut(s)	67, 211, 841
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	2 cut(s)	364, 487
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	282, 913
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 851
Bse1I	ACTGG	2 cut(s)	46, 367
BseBI	CCWGG	1 cut(s)	469
BseGI	GGATG	2 cut(s)	750, 979
BseLI	CCNNNNNNNGG	2 cut(s)	79, 851
BseMII	CTCAG	2 cut(s)	338, 707
BseNI	ACTGG	2 cut(s)	46, 367
BseXI	GCAGC	2 cut(s)	196, 851
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	3 cut(s)	45, 83, 489
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	79, 851
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	45, 83, 489
BsoBI	CYCGRG	1 cut(s)	968
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	1 cut(s)	616
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	3 cut(s)	45, 83, 489
BspCNI	CTCAG	2 cut(s)	337, 706
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	46, 367
BssMI	GATC	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	61, 407
Bst6I	CTCTTC	2 cut(s)	161, 438
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	324, 693
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	2 cut(s)	750, 979
BstKTI	GATC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 98
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	196, 851
BstX2I	RGATCY	1 cut(s)	616
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	45, 83, 489
BtsCI	GGATG	2 cut(s)	750, 979
BtsIMutI	CAGTG	2 cut(s)	51, 517
Cac8I	GCNNGC	1 cut(s)	70
CciI	TCATGA	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	364, 487
Csp6I	GTAC	3 cut(s)	397, 601, 953
CspCI	CAANNNNNGTGG	2 cut(s)	701, 736
CviAII	CATG	5 cut(s)	23, 124, 232, 332, 728
CviQI	GTAC	3 cut(s)	397, 601, 953
DdeI	CTNAG	2 cut(s)	324, 693
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	161, 438
EarI	CTCTTC	2 cut(s)	161, 438
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	4 cut(s)	225, 228, 261, 672
Eco88I	CYCGRG	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRI	GAATTC	3 cut(s)	472, 550, 565
EcoRII	CCWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	325
FaeI	CATG	5 cut(s)	26, 127, 235, 335, 731
FalI	AAGNNNNNCTT	4 cut(s)	253, 285, 291, 323
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	5 cut(s)	22, 123, 231, 331, 727
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	66, 210, 840
FokI	GGATG	2 cut(s)	737, 986
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	66, 210, 840
FspBI	CTAG	4 cut(s)	47, 519, 654, 846
GluI	GCNGC	3 cut(s)	66, 210, 840
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	45, 83, 489
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	5 cut(s)	26, 127, 235, 335, 731
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	4 cut(s)	515, 724, 938, 962
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	515, 638, 682
Hpy166II	GTNNAC	2 cut(s)	267, 603
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	6 cut(s)	13, 142, 163, 356, 519, 728
Hpy8I	GTNNAC	2 cut(s)	267, 603
HpyAV	CCTTC	3 cut(s)	285, 516, 540
HpyCH4III	ACNGT	2 cut(s)	61, 407
HpyCH4V	TGCA	2 cut(s)	634, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 98
HpyF3I	CTNAG	2 cut(s)	324, 693
Hsp92II	CATG	5 cut(s)	26, 127, 235, 335, 731
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	3 cut(s)	320, 701, 847
Lsp1109I	GCAGC	2 cut(s)	196, 851
MaeI	CTAG	4 cut(s)	47, 519, 654, 846
MaeIII	GTNAC	2 cut(s)	238, 772
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	9 cut(s)	148, 452, 455, 649, 652, 655, 917, 920, 933
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	6 cut(s)	452, 472, 550, 565, 659, 705
MmeI	TCCRAC	3 cut(s)	429, 778, 845
MnlI	CCTC	7 cut(s)	20, 41, 103, 164, 173, 267, 829
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	4 cut(s)	230, 392, 788, 878
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	89, 98
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	5 cut(s)	26, 127, 235, 335, 731
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	544
PagI	TCATGA	1 cut(s)	727
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	515, 724, 938, 962
PkrI	GCNGC	3 cut(s)	67, 211, 841
PscI	ACATGT	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	364, 487
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	3 cut(s)	398, 602, 954
RsaNI	GTAC	3 cut(s)	397, 601, 953
RseI	CAYNNNNRTG	4 cut(s)	230, 392, 788, 878
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	3 cut(s)	66, 210, 840
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	2 cut(s)	364, 487
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	4 cut(s)	230, 392, 788, 878
SmlI	CTYRAG	2 cut(s)	297, 928
SmoI	CTYRAG	2 cut(s)	297, 928
Sse9I	AATT	6 cut(s)	452, 472, 550, 565, 659, 705
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	4 cut(s)	47, 519, 654, 846
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	61, 407
TaqI	TCGA	5 cut(s)	544, 554, 569, 918, 944
TasI	AATT	6 cut(s)	452, 472, 550, 565, 659, 705
TatI	WGTACW	2 cut(s)	396, 600
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	515, 724, 938, 962
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	58, 517
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	209, 839
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	6 cut(s)	17, 148, 214, 320, 716, 744
TspRI	CASTG	2 cut(s)	58, 517
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	550
XspI	CTAG	4 cut(s)	47, 519, 654, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.