Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015328

Physical Location & Seq

Genomic Coordinates Forward (+)

63984973 .. 63986502

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG474600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGAAAGACCTCCAGAAAATCCATGCCCACCTCATCAAAACTGGCCTAGCCAATGACACAGTTGCCGCCAGCCGTGTCTTGGCCTTTTGTGCCTCCCCAGCCGGAAACATCAACTATGCCTACATGGTTTTCAGACATATCCAGAACCCAAACCTCTTCATCTGGAACACCATCATTAGAGGTTTCTCTAACAGCTCAAACCCTGAAGCTGCCATCTCTCTTTTCATTGACATGTTGGTCACTTCAGCTATCCAGCCACAAGGGTTGACTTACCCTTCAGTTTTCAAGGCTTACGCTCAAGTGGGTCTTGCCCGTGATGGAGCTCAGCTTCATGGGAGAGTTGTGAAGTTGGGTCTTGAAAGGGACCAGTTTATAAGGAACACCATCATACATATGTACTCAAACTGTGGCTTTTTGAGTGAAGCAAAAAGAGTGTTTGAAGAAGAGTTGGAATTTGACATTGTTGCATGGAATTCTATGGTAATGGGCCTTTCCAAATGTGGTGAAGTCAGTGAATCTAGAAGGCTGTTTGATAAAATGCTTCGAAGGAATTCGATTTCGTGGAATTCGATGATTGGTGGATATGTTAGGAATCGAATGTACACAGAAGCTTTGGATCTTTTTGGTGAAATGCAGAAGGAGAAGATAAGGCCTAGTGAATTTACAATGGTGAGCCTGCTGAATGCTTCAGCTCAGTTAGGAGCAATTAGACAAGGGGAGTGGATTCATGAATATATAAGGAAAAATCACATTCAACTCAATCCCATTGTTGTAACAGCAATCATCAATATGTATTGCAAGTGTGGAAGCATTGAAAAAGCTGTTCAGGTGTTTGAGGCAGCTCCTAGAACAGGGTTATCTTGTTGGAACTCCATTATTATGGGGTTAGCAACTAATGGTTGTGAAGAAGAAGCAATCGAGCTATTCTCAAGGCTTGAATCTTCGAGTTTTGTACCCGATGATGTCAGTTTTCTTGGTGTTCTAACTGCATGTAGTCACTCGGGGATGGTGGAGAAAGCAAGGAAGTATTTTTCAGTAATGAGAGAAACATATAAGATTGCACCATCCATTAAGCACTATAGTTGCATGGTTGATGTGTTAGGCAGAGCTGGACTTCTTGAAGAAGCTGAGAAGCTCATAGATGGTATGCCAATAAAAGCCGACGCGATTATTTGGGGTTCTTTGCTGTCATCTTGTAGGAAGCACAGAGACATTGAGATGGCTAAGCGGGCAGCAAAGCATGTAACTGAGTTGGATCCAAGTGACAGTTGTGGTTATGTGTTAATGTCAAATGTTTATGCTGCCTCTAGTCAATTTGAGGAAGCAATGCAGGAAAGGCTTTCAATGAGAGAGCAGAAGATTGAGAAAGAACCGGGATGTAGTTTGATCGAAGTGGATGGAGAGGTTCATGAGTTTATAGCTGGTGGAAGGCTGCATCAGAAAGCCCCAGAGATTTATTCACTATTGAATGGATTGGGATTTATGTTACAAAGAAATGCAATAGGTTATGATGAACTTGCTGCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

509

Amino Acids

57.02

Weight (kDa)

6.38

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	50 - 99	1.4e-06	PPR repeat family
PPR	PF01535	155 - 184	1.4e-06	PPR repeat
PPR_2	PF13041	184 - 229	1.7e-12	PPR repeat family
PPR	PF01535	186 - 215	3.2e-09	PPR repeat
E_motif	PF20431	402 - 464	1.8e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42920 AT2G42920
fragaria_vesca	FvH4_6g38310
malus_domestica	MD09G1151200.v1.1 MD17G1138800.v1.1
prunus_persica	Prupe.3G173600_v2.0.a1
pyrus_communis	pycom17g13190
rosa_chinensis	RchiOBHm_Chr2g0151611
rosa_laevigata	RLG00000020563
rosa_multiflora	Rmu_sc0005287.1_g000006
rosa_roxburghii	Rroxscaffold_2G00096320
rosa_rugosa	Rorug02G0427200
rosa_samantha	Rh2AG488100 Rh2BG500700 Rh2CG474600
rosa_wichuraiana	Rw2G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	1166
AciI	CCGC	2 cut(s)	66, 1228
AclWI	GGATC	3 cut(s)	624, 1250, 1263
AcsI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
AcuI	CTGAAG	4 cut(s)	225, 228, 261, 672
AfaI	GTAC	3 cut(s)	398, 602, 954
AfiI	CCNNNNNNNGG	2 cut(s)	79, 851
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	9 cut(s)	286, 359, 440, 755, 815, 938, 1121, 1344, 1468
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	1203
AlwI	GGATC	3 cut(s)	624, 1250, 1263
Ama87I	CYCGRG	1 cut(s)	1000
AoxI	GGCC	4 cut(s)	43, 81, 487, 650
ApeKI	GCWGC	6 cut(s)	209, 839, 1232, 1301, 1432, 1520
ApoI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
Asp700I	GAANNNNTTC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	364, 487
AsuC2I	CCSGG	1 cut(s)	1374
AsuHPI	GGTGA	3 cut(s)	515, 638, 682
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	1000
AvaII	GGWCC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	1255
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	6 cut(s)	196, 851, 1244, 1288, 1419, 1507
BccI	CCATC	9 cut(s)	179, 221, 311, 392, 1000, 1072, 1136, 1213, 1391
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	1374
BcoDI	GTCTC	1 cut(s)	1203
BfaI	CTAG	5 cut(s)	47, 519, 654, 846, 1308
BfmI	CTRYAG	1 cut(s)	1078
BisI	GCNGC	7 cut(s)	66, 210, 840, 1233, 1302, 1433, 1521
BlpI	GCTNAGC	2 cut(s)	324, 1224
BlsI	GCNGC	7 cut(s)	67, 211, 841, 1234, 1303, 1434, 1522
Bme1390I	CCNGG	1 cut(s)	1374
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	1000
BmgT120I	GGNCC	2 cut(s)	364, 487
BmiI	GGNNCC	2 cut(s)	365, 1257
BmrFI	CCNGG	1 cut(s)	1374
BmsI	GCATC	1 cut(s)	1444
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu1102I	GCTNAGC	2 cut(s)	324, 1224
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	282, 913
BpuMI	CCSGG	1 cut(s)	1374
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 851
Bse1I	ACTGG	2 cut(s)	46, 367
Bse3DI	GCAATG	1 cut(s)	1332
BseGI	GGATG	4 cut(s)	1011, 1064, 1382, 1402
BseLI	CCNNNNNNNGG	2 cut(s)	79, 851
BseMI	GCAATG	1 cut(s)	1332
BseMII	CTCAG	4 cut(s)	338, 707, 1119, 1239
BseNI	ACTGG	2 cut(s)	46, 367
BseXI	GCAGC	6 cut(s)	196, 851, 1244, 1288, 1419, 1507
BseYI	CCCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	1166
BshFI	GGCC	4 cut(s)	45, 83, 489, 652
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	1000
BsiSI	CCGG	2 cut(s)	102, 1373
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	79, 851
BsmAI	GTCTC	1 cut(s)	1203
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	4 cut(s)	45, 83, 489, 652
BsoBI	CYCGRG	1 cut(s)	1000
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	3 cut(s)	616, 1255, 1386
Bsp1720I	GCTNAGC	2 cut(s)	324, 1224
BspACI	CCGC	2 cut(s)	66, 1228
BspANI	GGCC	4 cut(s)	45, 83, 489, 652
BspCNI	CTCAG	4 cut(s)	337, 706, 1120, 1240
BspFNI	CGCG	1 cut(s)	1166
BspHI	TCATGA	2 cut(s)	727, 1408
BspLI	GGNNCC	2 cut(s)	365, 1257
BspPI	GGATC	3 cut(s)	624, 1250, 1263
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	1332
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	46, 367
BssMI	GATC	3 cut(s)	616, 1255, 1386
Bst4CI	ACNGT	3 cut(s)	61, 407, 1268
Bst6I	CTCTTC	2 cut(s)	161, 438
BstAUI	TGTACA	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	70, 677, 1230
BstDEI	CTNAG	5 cut(s)	324, 693, 1128, 1224, 1248
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	4 cut(s)	1011, 1064, 1382, 1402
BstFNI	CGCG	1 cut(s)	1166
BstKTI	GATC	3 cut(s)	619, 1258, 1389
BstMAI	GTCTC	1 cut(s)	1203
BstMBI	GATC	3 cut(s)	616, 1255, 1386
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 98, 1229, 1336
BstNSI	RCATGY	3 cut(s)	235, 993, 1244
BstSCI	CCNGG	1 cut(s)	1372
BstSFI	CTRYAG	1 cut(s)	1078
BstUI	CGCG	1 cut(s)	1166
BstV1I	GCAGC	6 cut(s)	196, 851, 1244, 1288, 1419, 1507
BstX2I	RGATCY	2 cut(s)	616, 1255
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	2 cut(s)	616, 1255
BsuRI	GGCC	4 cut(s)	45, 83, 489, 652
BtsCI	GGATG	4 cut(s)	1011, 1064, 1382, 1402
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	70, 677, 1230
CciI	TCATGA	2 cut(s)	727, 1408
Cfr13I	GGNCC	2 cut(s)	364, 487
CseI	GACGC	1 cut(s)	1172
Csp6I	GTAC	3 cut(s)	397, 601, 953
CspCI	CAANNNNNGTGG	4 cut(s)	246, 281, 701, 736
CviQI	GTAC	3 cut(s)	397, 601, 953
DdeI	CTNAG	5 cut(s)	324, 693, 1128, 1224, 1248
DpnI	GATC	3 cut(s)	618, 1257, 1388
DpnII	GATC	3 cut(s)	616, 1255, 1386
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	161, 438
EarI	CTCTTC	2 cut(s)	161, 438
Ecl136II	GAGCTC	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	4 cut(s)	225, 228, 261, 672
Eco88I	CYCGRG	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRI	GAATTC	3 cut(s)	472, 550, 565
EcoT38I	GRGCYC	1 cut(s)	325
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	377
FauI	CCCGC	1 cut(s)	1221
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	66, 210, 840, 1233, 1302, 1433, 1521
FokI	GGATG	4 cut(s)	1018, 1051, 1389, 1409
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	7 cut(s)	66, 210, 840, 1233, 1302, 1433, 1521
FspBI	CTAG	5 cut(s)	47, 519, 654, 846, 1308
GluI	GCNGC	7 cut(s)	66, 210, 840, 1233, 1302, 1433, 1521
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	4 cut(s)	45, 83, 489, 652
HapII	CCGG	2 cut(s)	102, 1373
HgaI	GACGC	1 cut(s)	1172
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	4 cut(s)	515, 592, 724, 938
HpaII	CCGG	2 cut(s)	102, 1373
HphI	GGTGA	3 cut(s)	515, 638, 682
Hpy166II	GTNNAC	2 cut(s)	267, 603
Hpy188I	TCNGA	2 cut(s)	134, 1440
Hpy188III	TCNNGA	8 cut(s)	13, 142, 163, 356, 519, 728, 1118, 1409
Hpy8I	GTNNAC	2 cut(s)	267, 603
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	5 cut(s)	285, 516, 540, 631, 1422
HpyCH4III	ACNGT	3 cut(s)	61, 407, 1268
HpyCH4V	TGCA	9 cut(s)	467, 634, 798, 989, 1061, 1086, 1330, 1435, 1499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 98, 1229, 1336
HpyF3I	CTNAG	5 cut(s)	324, 693, 1128, 1224, 1248
Kzo9I	GATC	3 cut(s)	616, 1255, 1386
LmnI	GCTCC	3 cut(s)	320, 701, 847
Lsp1109I	GCAGC	6 cut(s)	196, 851, 1244, 1288, 1419, 1507
LweI	GCATC	1 cut(s)	1444
MaeI	CTAG	5 cut(s)	47, 519, 654, 846, 1308
MaeIII	GTNAC	6 cut(s)	238, 772, 995, 1243, 1262, 1485
MalI	GATC	3 cut(s)	618, 1257, 1388
MboI	GATC	3 cut(s)	616, 1255, 1386
MboII	GAAGA	9 cut(s)	148, 452, 455, 655, 917, 920, 933, 1133, 1369
MflI	RGATCY	2 cut(s)	616, 1255
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	7 cut(s)	452, 472, 550, 565, 659, 705, 1313
MmeI	TCCRAC	3 cut(s)	429, 845, 1233
MnlI	CCTC	9 cut(s)	20, 41, 103, 164, 173, 829, 1312, 1315, 1396
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	3 cut(s)	1071, 1283, 1528
MslI	CAYNNNNRTG	5 cut(s)	230, 392, 788, 878, 1217
MspI	CCGG	2 cut(s)	102, 1373
MspR9I	CCNGG	1 cut(s)	1374
Mva1269I	GAATGC	1 cut(s)	688
MvnI	CGCG	1 cut(s)	1166
MwoI	GCNNNNNNNGC	4 cut(s)	89, 98, 1229, 1336
NciI	CCSGG	1 cut(s)	1374
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	3 cut(s)	616, 1255, 1386
NlaIV	GGNNCC	2 cut(s)	365, 1257
NmuCI	GTSAC	3 cut(s)	238, 995, 1262
NspI	RCATGY	3 cut(s)	235, 993, 1244
NspV	TTCGAA	1 cut(s)	544
PagI	TCATGA	2 cut(s)	727, 1408
PceI	AGGCCT	1 cut(s)	652
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	515, 592, 724, 938
PkrI	GCNGC	7 cut(s)	67, 211, 841, 1234, 1303, 1434, 1522
PscI	ACATGT	1 cut(s)	231
PsiI	TTATAA	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	365, 1257
PspPI	GGNCC	2 cut(s)	364, 487
PsuI	RGATCY	2 cut(s)	616, 1255
RsaI	GTAC	3 cut(s)	398, 602, 954
RsaNI	GTAC	3 cut(s)	397, 601, 953
RseI	CAYNNNNRTG	5 cut(s)	230, 392, 788, 878, 1217
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	1071, 1283, 1528
SatI	GCNGC	7 cut(s)	66, 210, 840, 1233, 1302, 1433, 1521
Sau3AI	GATC	3 cut(s)	616, 1255, 1386
Sau96I	GGNCC	2 cut(s)	364, 487
ScrFI	CCNGG	1 cut(s)	1374
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	1444
SfcI	CTRYAG	1 cut(s)	1078
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	5 cut(s)	230, 392, 788, 878, 1217
SmlI	CTYRAG	2 cut(s)	297, 928
SmoI	CTYRAG	2 cut(s)	297, 928
Sse9I	AATT	7 cut(s)	452, 472, 550, 565, 659, 705, 1313
SseBI	AGGCCT	1 cut(s)	652
SsiI	CCGC	2 cut(s)	66, 1228
SspMI	CTAG	5 cut(s)	47, 519, 654, 846, 1308
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	1372
TaaI	ACNGT	3 cut(s)	61, 407, 1268
TaqI	TCGA	7 cut(s)	544, 554, 569, 595, 918, 944, 1389
TasI	AATT	7 cut(s)	452, 472, 550, 565, 659, 705, 1313
TatI	WGTACW	2 cut(s)	396, 600
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	515, 592, 724, 938
Tru1I	TTAA	3 cut(s)	1071, 1283, 1528
Tru9I	TTAA	3 cut(s)	1071, 1283, 1528
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	3 cut(s)	238, 995, 1262
TseI	GCWGC	6 cut(s)	209, 839, 1232, 1301, 1432, 1520
Tsp45I	GTSAC	3 cut(s)	238, 995, 1262
TspDTI	ATGAA	8 cut(s)	17, 148, 214, 320, 716, 744, 1397, 1527
TspRI	CASTG	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	5 cut(s)	452, 472, 550, 565, 659
XbaI	TCTAGA	1 cut(s)	518
XceI	RCATGY	3 cut(s)	235, 993, 1244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	550
XspI	CTAG	5 cut(s)	47, 519, 654, 846, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.