peripheral T cell tolerance induction
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g00980 FvH4_6g00980 FvH4_6g00980 |
| malus_domestica | MD04G1165900.v1.1 MD04G1239500.v1.1 MD12G1256600.v1.1 |
| prunus_persica | Prupe.3G301900_v2.0.a1 Prupe.3G302000_v2.0.a1 Prupe.6G052100_v2.0.a1 Prupe.6G357400_v2.0.a1 Prupe.6G357700_v2.0.a1 |
| pyrus_communis | pycom04g14760 pycom04g21150 pycom12g23530 |
| rosa_chinensis | RchiOBHm_Chr3g0448441 |
| rosa_laevigata | RLG00000025914 |
| rosa_multiflora | Rmu_sc0003308.1_g000010 Rmu_sc0011979.1_g000002 Rmu_sc0024371.1_g000001 Rmu_sc0027902.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00426630 |
| rosa_rugosa | Rorug02G0612500 |
| rosa_samantha | Rh3AG011900 Rh3BG011700 Rh3CG011400 Rh3DG012100 |
| rosa_wichuraiana | Rw3G000920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 291 |
| AcsI | RAATTY | 1 cut(s) | 286 |
| AcuI | CTGAAG | 2 cut(s) | 44, 59 |
| AgsI | TTSAA | 4 cut(s) | 98, 216, 350, 394 |
| AluBI | AGCT | 3 cut(s) | 363, 381, 464 |
| AluI | AGCT | 3 cut(s) | 363, 381, 464 |
| ApeKI | GCWGC | 4 cut(s) | 335, 338, 341, 360 |
| ApoI | RAATTY | 1 cut(s) | 286 |
| AsuHPI | GGTGA | 3 cut(s) | 292, 318, 467 |
| BbsI | GAAGAC | 1 cut(s) | 417 |
| BbvI | GCAGC | 4 cut(s) | 347, 350, 353, 372 |
| BccI | CCATC | 3 cut(s) | 337, 368, 492 |
| BfaI | CTAG | 2 cut(s) | 189, 429 |
| BisI | GCNGC | 4 cut(s) | 336, 339, 342, 361 |
| BlsI | GCNGC | 4 cut(s) | 337, 340, 343, 362 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BmsI | GCATC | 1 cut(s) | 160 |
| BpiI | GAAGAC | 1 cut(s) | 417 |
| BpmI | CTGGAG | 1 cut(s) | 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 222, 252 |
| BseGI | GGATG | 2 cut(s) | 175, 484 |
| BseXI | GCAGC | 4 cut(s) | 347, 350, 353, 372 |
| BspACI | CCGC | 1 cut(s) | 291 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 1 cut(s) | 47 |
| BstC8I | GCNNGC | 2 cut(s) | 383, 466 |
| BstDEI | CTNAG | 1 cut(s) | 406 |
| BstEII | GGTNACC | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 175, 484 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstPI | GGTNACC | 1 cut(s) | 32 |
| BstV1I | GCAGC | 4 cut(s) | 347, 350, 353, 372 |
| BstV2I | GAAGAC | 1 cut(s) | 417 |
| BtsCI | GGATG | 2 cut(s) | 175, 484 |
| BtsIMutI | CAGTG | 2 cut(s) | 43, 414 |
| Cac8I | GCNNGC | 2 cut(s) | 383, 466 |
| CviAII | CATG | 1 cut(s) | 6 |
| CviJI | RGCY | 4 cut(s) | 207, 363, 381, 464 |
| CviKI_1 | RGCY | 4 cut(s) | 207, 363, 381, 464 |
| DdeI | CTNAG | 1 cut(s) | 406 |
| Eco57I | CTGAAG | 2 cut(s) | 44, 59 |
| Eco91I | GGTNACC | 1 cut(s) | 32 |
| EcoO65I | GGTNACC | 1 cut(s) | 32 |
| EcoRI | GAATTC | 1 cut(s) | 286 |
| EcoT22I | ATGCAT | 1 cut(s) | 175 |
| FaeI | CATG | 1 cut(s) | 9 |
| FaiI | YATR | 4 cut(s) | 7, 78, 175, 177 |
| FatI | CATG | 1 cut(s) | 5 |
| FauNDI | CATATG | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 4 cut(s) | 336, 339, 342, 361 |
| FokI | GGATG | 2 cut(s) | 182, 471 |
| Fsp4HI | GCNGC | 4 cut(s) | 336, 339, 342, 361 |
| FspBI | CTAG | 2 cut(s) | 189, 429 |
| GluI | GCNGC | 4 cut(s) | 336, 339, 342, 361 |
| GsuI | CTGGAG | 1 cut(s) | 249 |
| Hin1II | CATG | 1 cut(s) | 9 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HinfI | GANTC | 2 cut(s) | 419, 458 |
| HphI | GGTGA | 3 cut(s) | 292, 318, 467 |
| Hpy166II | GTNNAC | 1 cut(s) | 481 |
| Hpy188I | TCNGA | 3 cut(s) | 138, 257, 367 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 429 |
| Hpy8I | GTNNAC | 1 cut(s) | 481 |
| HpyAV | CCTTC | 3 cut(s) | 68, 168, 502 |
| HpyCH4III | ACNGT | 1 cut(s) | 47 |
| HpyCH4IV | ACGT | 1 cut(s) | 185 |
| HpyCH4V | TGCA | 1 cut(s) | 173 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpyF3I | CTNAG | 1 cut(s) | 406 |
| HpySE526I | ACGT | 1 cut(s) | 185 |
| Hsp92II | CATG | 1 cut(s) | 9 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 3 cut(s) | 50, 90, 213 |
| Lsp1109I | GCAGC | 4 cut(s) | 347, 350, 353, 372 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeI | CTAG | 2 cut(s) | 189, 429 |
| MaeII | ACGT | 1 cut(s) | 185 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MboII | GAAGA | 2 cut(s) | 204, 422 |
| MfeI | CAATTG | 1 cut(s) | 275 |
| MluCI | AATT | 5 cut(s) | 123, 275, 286, 297, 446 |
| MmeI | TCCRAC | 2 cut(s) | 161, 235 |
| MnlI | CCTC | 3 cut(s) | 145, 251, 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 175 |
| MseI | TTAA | 1 cut(s) | 126 |
| MslI | CAYNNNNRTG | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 1 cut(s) | 293 |
| MunI | CAATTG | 1 cut(s) | 275 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NdeI | CATATG | 1 cut(s) | 175 |
| NlaIII | CATG | 1 cut(s) | 9 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| NsiI | ATGCAT | 1 cut(s) | 175 |
| PfeI | GAWTC | 2 cut(s) | 419, 458 |
| PkrI | GCNGC | 4 cut(s) | 337, 340, 343, 362 |
| PspEI | GGTNACC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| RseI | CAYNNNNRTG | 1 cut(s) | 98 |
| SaqAI | TTAA | 1 cut(s) | 126 |
| SatI | GCNGC | 4 cut(s) | 336, 339, 342, 361 |
| SetI | ASST | 9 cut(s) | 39, 134, 156, 188, 266, 365, 383, 454, 466 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 98 |
| Sse9I | AATT | 5 cut(s) | 123, 275, 286, 297, 446 |
| SsiI | CCGC | 1 cut(s) | 291 |
| SspMI | CTAG | 2 cut(s) | 189, 429 |
| TaaI | ACNGT | 1 cut(s) | 47 |
| TaiI | ACGT | 1 cut(s) | 188 |
| TasI | AATT | 5 cut(s) | 123, 275, 286, 297, 446 |
| TfiI | GAWTC | 2 cut(s) | 419, 458 |
| Tru1I | TTAA | 1 cut(s) | 126 |
| Tru9I | TTAA | 1 cut(s) | 126 |
| TscAI | CASTG | 2 cut(s) | 50, 421 |
| TseI | GCWGC | 4 cut(s) | 335, 338, 341, 360 |
| TspDTI | ATGAA | 2 cut(s) | 299, 411 |
| TspRI | CASTG | 2 cut(s) | 50, 421 |
| XapI | RAATTY | 1 cut(s) | 286 |
| XbaI | TCTAGA | 1 cut(s) | 428 |
| XspI | CTAG | 2 cut(s) | 189, 429 |
| Zsp2I | ATGCAT | 1 cut(s) | 175 |