Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006411

Physical Location & Seq

Genomic Coordinates Forward (+)

26618187 .. 26619286

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCATGAAGAAGAACAACTTCATGATGAGGAAAAGACAGGCAGTGACGCCTTACAACAGGCTGGAGAAGTACTTGGCCAGAGTGCTCAAAGTGCAATGGATGTTGAAGTTCTTTGCATGGATCATTTAAGAAAAAGTAGTGATAGTAGAGACTCCTCTTCTGAAGCTACAACTCTATGTAAACCAGGAAAAACCCATGCATTGATAAGAGATGAAGCTCAAGTTTTATCAAGTGCTGATCCTAAAGCAACAGCAGATCACTTCCTTATTTGGACTTGTCTGTTATCCCCACTGGACCATGGTGGTTCTAATCATTCTGCAAAAGTATGGCCAGCCAATGGTTGTACAGGTGAAAGGGGAACTGGGAGGTCTGCAAAGAAACCTGATAAAGGAAGGAGTGCAAAGGAGGAGGCATCCAAACGTGGGAAGGTCCGAGAAATACAGAAAAAGCCATCTTCCATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.75

Weight (kDa)

6.38

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00980 FvH4_6g00980 FvH4_6g00980
malus_domestica	MD04G1165900.v1.1 MD04G1239500.v1.1 MD12G1256600.v1.1
prunus_persica	Prupe.3G301900_v2.0.a1 Prupe.3G302000_v2.0.a1 Prupe.6G052100_v2.0.a1 Prupe.6G357400_v2.0.a1 Prupe.6G357700_v2.0.a1
pyrus_communis	pycom04g14760 pycom04g21150 pycom12g23530
rosa_chinensis	RchiOBHm_Chr3g0448441
rosa_laevigata	RLG00000025914
rosa_multiflora	Rmu_sc0003308.1_g000010 Rmu_sc0011979.1_g000002 Rmu_sc0024371.1_g000001 Rmu_sc0027902.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426630
rosa_rugosa	Rorug02G0612500
rosa_samantha	Rh3AG011900 Rh3BG011700 Rh3CG011400 Rh3DG012100
rosa_wichuraiana	Rw3G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AclWI	GGATC	2 cut(s)	129, 233
AcoI	YGGCCR	2 cut(s)	76, 329
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	72, 346
AfiI	CCNNNNNNNGG	3 cut(s)	338, 389, 423
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	167, 218
AluI	AGCT	2 cut(s)	167, 218
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	129, 233
AoxI	GGCC	2 cut(s)	76, 329
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	295, 430
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	2 cut(s)	295, 430
BalI	TGGCCA	2 cut(s)	78, 331
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	144
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	295, 430
BmgT120I	GGNCC	2 cut(s)	295, 430
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 389, 423
Bse1I	ACTGG	2 cut(s)	297, 367
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	106, 413
BseLI	CCNNNNNNNGG	3 cut(s)	338, 389, 423
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	297, 367
BseRI	GAGGAG	2 cut(s)	145, 422
BshFI	GGCC	2 cut(s)	78, 331
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	338, 389, 423
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	78, 331
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	121, 238, 256
Bsp19I	CCATGG	1 cut(s)	298
BspANI	GGCC	2 cut(s)	78, 331
BspHI	TCATGA	1 cut(s)	22
BspPI	GGATC	2 cut(s)	129, 233
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	297, 367
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	121, 238, 256
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	298
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	106, 413
BstKTI	GATC	3 cut(s)	124, 241, 259
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	121, 238, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	78, 331
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	106, 413
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 290
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	295, 430
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	71, 345
CviAII	CATG	6 cut(s)	5, 23, 118, 197, 299, 460
CviJI	RGCY	7 cut(s)	62, 78, 167, 218, 331, 335, 451
CviKI_1	RGCY	7 cut(s)	62, 78, 167, 218, 331, 335, 451
CviQI	GTAC	2 cut(s)	71, 345
DpnI	GATC	3 cut(s)	123, 240, 258
DpnII	GATC	3 cut(s)	121, 238, 256
EaeI	YGGCCR	2 cut(s)	76, 329
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	295, 430
Eco57I	CTGAAG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	2 cut(s)	6, 202
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	6 cut(s)	8, 26, 121, 200, 302, 463
FaiI	YATR	8 cut(s)	6, 24, 119, 178, 198, 300, 328, 461
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	6 cut(s)	4, 22, 117, 196, 298, 459
FokI	GGATG	2 cut(s)	113, 400
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	78, 331
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	8, 26, 121, 200, 302, 463
HinfI	GANTC	1 cut(s)	152
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	163, 434
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	387, 421
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	7 cut(s)	4, 95, 117, 200, 320, 374, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	8, 26, 121, 200, 302, 463
Kzo9I	GATC	3 cut(s)	121, 238, 256
LweI	GCATC	1 cut(s)	422
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	123, 240, 258
MboI	GATC	3 cut(s)	121, 238, 256
MboII	GAAGA	4 cut(s)	20, 23, 150, 447
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	2 cut(s)	78, 331
MluNI	TGGCCA	2 cut(s)	78, 331
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	22, 166, 360, 400, 403
Mox20I	TGGCCA	2 cut(s)	78, 331
Mph1103I	ATGCAT	2 cut(s)	6, 202
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	2 cut(s)	78, 331
MseI	TTAA	2 cut(s)	128, 466
Msp20I	TGGCCA	2 cut(s)	78, 331
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	121, 238, 256
NlaIII	CATG	6 cut(s)	8, 26, 121, 200, 302, 463
NmuCI	GTSAC	1 cut(s)	44
NsiI	ATGCAT	2 cut(s)	6, 202
PagI	TCATGA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	295, 430
RsaI	GTAC	2 cut(s)	72, 346
RsaNI	GTAC	2 cut(s)	71, 345
SaqAI	TTAA	2 cut(s)	128, 466
Sau3AI	GATC	3 cut(s)	121, 238, 256
Sau96I	GGNCC	2 cut(s)	295, 430
ScaI	AGTACT	1 cut(s)	72
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	7 cut(s)	169, 220, 352, 371, 385, 424, 432
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	2 cut(s)	295, 430
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	298
TaiI	ACGT	1 cut(s)	424
TatI	WGTACW	2 cut(s)	70, 344
Tru1I	TTAA	2 cut(s)	128, 466
Tru9I	TTAA	2 cut(s)	128, 466
TscAI	CASTG	2 cut(s)	49, 297
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	11, 21, 228
TspRI	CASTG	2 cut(s)	49, 297
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	295, 430
XagI	CCTNNNNNAGG	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	72
Zsp2I	ATGCAT	2 cut(s)	6, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.