Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006411

Physical Location & Seq

Genomic Coordinates Forward (+)

17566827 .. 17568202

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTGTCAGAAAATAAACCCTAAAATTTTATCATCTTCTTTCCATCTTCTCCGCCGCTGCCTTTCTTTTCCCGTAGCCATCCTCCTCACCCTCATCCTCTCCCGTAGCCTCTCTTTTCTCAATTCTCACTTCTCTCACCCTGTCAGCCCCCGGCGCACCGCTCAACAGCCAGAAAGACACAGCCGACGGCACCCAGCCAGCAGCCAGATTGACCCATTTGGGTGGGTCTTATACTTTGATAAAAGCTTGATTTCCAGATTGTTTCAGATTTTTCATACCCCTGAAGGCTTGATTTCCAGTGGTAAAATGGGAACTGGGAAGTCTGCAAAGAAACCTGATAAAGGAAAAGCTGCAATGGAGGAGGCATGCATGCGTGAGAAGGTCCGAGAAATACAGAAAAACCTGTCCTCCATGCTTAGGCTCTCGGGGAATTGGCAATTCCTAATCCTAACTTCAGACACAGTCAGCTTTCTTCCCTGTAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0006417 GO:0006446 GO:0006448 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009636 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0014070 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032056 GO:0032058 GO:0032268 GO:0032270 GO:0033554 GO:0034198 GO:0034248 GO:0034250 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042594 GO:0043021 GO:0043022 GO:0043555 GO:0043558 GO:0044877 GO:0045727 GO:0045948 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0060992 GO:0065007 GO:0070301 GO:0070887 GO:0071214 GO:0071236 GO:0071262 GO:0071264 GO:0071310 GO:0071407 GO:0071417 GO:0071467 GO:0071468 GO:0071495 GO:0071496 GO:0072755 GO:0080090 GO:0097237 GO:0104004 GO:1901561 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990451 GO:1990928 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ

Protein Analysis

163

Amino Acids

18.4

Weight (kDa)

10.29

Isoelectric Point (pI)

57.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00980 FvH4_6g00980 FvH4_6g00980
malus_domestica	MD04G1165900.v1.1 MD04G1239500.v1.1 MD12G1256600.v1.1
prunus_persica	Prupe.3G301900_v2.0.a1 Prupe.3G302000_v2.0.a1 Prupe.6G052100_v2.0.a1 Prupe.6G357400_v2.0.a1 Prupe.6G357700_v2.0.a1
pyrus_communis	pycom04g14760 pycom04g21150 pycom12g23530
rosa_chinensis	RchiOBHm_Chr3g0448441
rosa_laevigata	RLG00000025914
rosa_multiflora	Rmu_sc0003308.1_g000010 Rmu_sc0011979.1_g000002 Rmu_sc0024371.1_g000001 Rmu_sc0027902.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426630
rosa_rugosa	Rorug02G0612500
rosa_samantha	Rh3AG011900 Rh3BG011700 Rh3CG011400 Rh3DG012100
rosa_wichuraiana	Rw3G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	161
AciI	CCGC	3 cut(s)	52, 55, 159
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	303, 438
AfiI	CCNNNNNNNGG	2 cut(s)	341, 417
AluBI	AGCT	3 cut(s)	246, 350, 468
AluI	AGCT	3 cut(s)	246, 350, 468
Ama87I	CYCGRG	1 cut(s)	424
ApeKI	GCWGC	3 cut(s)	57, 201, 350
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	79, 128
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	44, 213, 337
BccI	CCATC	2 cut(s)	51, 86
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	151
BisI	GCNGC	4 cut(s)	55, 58, 202, 351
BlsI	GCNGC	4 cut(s)	56, 59, 203, 352
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 417
Bse1I	ACTGG	2 cut(s)	297, 319
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	78, 93
BseLI	CCNNNNNNNGG	2 cut(s)	341, 417
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	297, 319
BseRI	GAGGAG	2 cut(s)	74, 374
BseXI	GCAGC	3 cut(s)	44, 213, 337
BseYI	CCCAGC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	341, 417
BsoBI	CYCGRG	1 cut(s)	424
BspACI	CCGC	3 cut(s)	52, 55, 159
BspLI	GGNNCC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	297, 319
BssECI	CCNNGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	199, 367, 371
BstDEI	CTNAG	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	78, 93
BstHHI	GCGC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	2 cut(s)	369, 373
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	44, 213, 337
BstXI	CCANNNNNNTGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	78, 93
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	199, 367, 371
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	382
CviAII	CATG	3 cut(s)	366, 370, 412
DdeI	CTNAG	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	303, 438
Eco88I	CYCGRG	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	371
FaeI	CATG	3 cut(s)	369, 373, 415
FaiI	YATR	6 cut(s)	232, 276, 367, 371, 413, 485
FatI	CATG	3 cut(s)	365, 369, 411
Fnu4HI	GCNGC	4 cut(s)	55, 58, 202, 351
FokI	GGATG	2 cut(s)	65, 80
Fsp4HI	GCNGC	4 cut(s)	55, 58, 202, 351
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	55, 58, 202, 351
GsaI	CCCAGC	1 cut(s)	197
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	369, 373, 415
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	244
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	79, 128
Hpy188I	TCNGA	4 cut(s)	9, 267, 386, 457
Hpy188III	TCNNGA	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	278, 373
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	3 cut(s)	326, 353, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	369, 373, 415
HspAI	GCGC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	44, 213, 337
MbiI	CCGCTC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	27, 38, 464
MluCI	AATT	4 cut(s)	24, 121, 430, 437
MnlI	CCTC	8 cut(s)	92, 95, 101, 107, 119, 352, 355, 418
Mph1103I	ATGCAT	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	151
NlaIII	CATG	3 cut(s)	369, 373, 415
NlaIV	GGNNCC	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	2 cut(s)	369, 373
PaeI	GCATGC	2 cut(s)	369, 373
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	56, 59, 203, 352
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	220
SatI	GCNGC	4 cut(s)	55, 58, 202, 351
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	6 cut(s)	248, 337, 352, 384, 405, 470
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	220
SphI	GCATGC	2 cut(s)	369, 373
Sse9I	AATT	4 cut(s)	24, 121, 430, 437
SsiI	CCGC	3 cut(s)	52, 55, 159
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	463
TasI	AATT	4 cut(s)	24, 121, 430, 437
TauI	GCSGC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	3 cut(s)	57, 201, 350
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	2 cut(s)	369, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.