Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006411

Physical Location & Seq

Genomic Coordinates Reverse (-)

30302834 .. 30304203

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCAGGAAGCAAAGTGTTGCTAACGTATAAGCGAAAGCGGCAATCAAGAACAGATCCTGTACAGGGACATGAGTGCCATAATTCACTTTTTGTTGCTCCAGATGATACTTCTTTAAGCAAACCACCAGACTTGCAAGTTCATTTGATTGATAAGCGTTCATCAGAACATTATAACAGAAATTCTGCGGTATGCCATGTATGTTTTGTGTGCTGTGTCGGGGGTAACCTGAAGCACTGTGGCAAATGCCTTCAGTCGTATCATCTCCAATGCCTACATAAGCCCCATAAAGAAAAGAAACACATTGAAGTATCTGGCACAAGACAAATACCAATTAAAACCTTTCCGTCAAGTCTTGATGAGGTTCCCACCCAAAGGGATGCATATGGGAATAAGTCTAGTGGCAAGAAAGTTGGCTCATCTTCAAATGCTAATGCTGGAGCATTGGTTGATGATAATAATGTTGGAGGGAGGTCAGTTTCTCAATTGGTGATGAATTCCGCTGTAATTACTGCTGATTTTGTCAGACAAAAATCATCATCAGCAGCAGCAGCATTTGAAAGAAAAAGCAGCTCTGAATGTGATGGTAGCTCACCAAGATTGAATACATCAAACTTAGAAGACACTGATTCATTTTCTAGAAATAAGTTAGATAAATTAGGTGGTGATTCAGCTGCGCAAAACAAGTTGACCACCCCATTGGTTACTTTCTGCCGAAGGAATAAAAGAAAAAAGGATATGGATGAGTCTAATATACAAAGGAAATCACTGCCTGTGGAAAATAGCTGCTCATTGATAACCAAATTGAATAATTGTGTTTGTACTAATACCAGTTCTTATGAAGAAACTTCCCCTGAAAACTGCTCAGTAGATCATGAAGCAGATTTGAAGCACTCCAGAGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.1

Weight (kDa)

8.86

Isoelectric Point (pI)

62.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00980 FvH4_6g00980 FvH4_6g00980
malus_domestica	MD04G1165900.v1.1 MD04G1239500.v1.1 MD12G1256600.v1.1
prunus_persica	Prupe.3G301900_v2.0.a1 Prupe.3G302000_v2.0.a1 Prupe.6G052100_v2.0.a1 Prupe.6G357400_v2.0.a1 Prupe.6G357700_v2.0.a1
pyrus_communis	pycom04g14760 pycom04g21150 pycom12g23530
rosa_chinensis	RchiOBHm_Chr3g0448441
rosa_laevigata	RLG00000025914
rosa_multiflora	Rmu_sc0003308.1_g000010 Rmu_sc0011979.1_g000002 Rmu_sc0024371.1_g000001 Rmu_sc0027902.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426630
rosa_rugosa	Rorug02G0612500
rosa_samantha	Rh3AG011900 Rh3BG011700 Rh3CG011400 Rh3DG012100
rosa_wichuraiana	Rw3G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
Acc16I	TGCGCA	1 cut(s)	678
AciI	CCGC	3 cut(s)	40, 188, 501
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	2 cut(s)	181, 496
AcuI	CTGAAG	2 cut(s)	236, 251
AfaI	GTAC	2 cut(s)	63, 823
AfiI	CCNNNNNNNGG	2 cut(s)	65, 375
AgsI	TTSAA	6 cut(s)	308, 426, 560, 604, 808, 889
AluBI	AGCT	4 cut(s)	573, 591, 674, 786
AluI	AGCT	4 cut(s)	573, 591, 674, 786
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	59
ApeKI	GCWGC	6 cut(s)	545, 548, 551, 570, 674, 786
ApoI	RAATTY	2 cut(s)	181, 496
AspLEI	GCGC	1 cut(s)	679
AsuHPI	GGTGA	3 cut(s)	502, 585, 677
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	6 cut(s)	557, 560, 563, 582, 661, 773
BccI	CCATC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	399, 639
BisI	GCNGC	7 cut(s)	41, 546, 549, 552, 571, 675, 787
BlsI	GCNGC	7 cut(s)	42, 547, 550, 553, 572, 676, 788
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	3 cut(s)	84, 459, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 375
Bse1I	ACTGG	1 cut(s)	831
BseGI	GGATG	2 cut(s)	385, 748
BseLI	CCNNNNNNNGG	2 cut(s)	65, 375
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	1 cut(s)	831
BseXI	GCAGC	6 cut(s)	557, 560, 563, 582, 661, 773
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	65, 375
BsmFI	GGGAC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	55, 871
BspACI	CCGC	3 cut(s)	40, 188, 501
BspCNI	CTCAG	1 cut(s)	878
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	831
BssMI	GATC	2 cut(s)	55, 871
Bst4CI	ACNGT	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	616, 865
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	385, 748
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	2 cut(s)	58, 874
BstMBI	GATC	2 cut(s)	55, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 551
BstPI	GGTNACC	1 cut(s)	224
BstV1I	GCAGC	6 cut(s)	557, 560, 563, 582, 661, 773
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	385, 748
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	3 cut(s)	235, 624, 767
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	62, 822
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	3 cut(s)	71, 197, 875
CviJI	RGCY	6 cut(s)	283, 417, 573, 591, 674, 786
CviKI_1	RGCY	6 cut(s)	283, 417, 573, 591, 674, 786
CviQI	GTAC	2 cut(s)	62, 822
DdeI	CTNAG	2 cut(s)	616, 865
DpnI	GATC	2 cut(s)	57, 873
DpnII	GATC	2 cut(s)	55, 871
Eco57I	CTGAAG	2 cut(s)	236, 251
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	496
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	3 cut(s)	74, 200, 878
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	70, 196, 874
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	7 cut(s)	41, 546, 549, 552, 571, 675, 787
FokI	GGATG	2 cut(s)	392, 755
Fsp4HI	GCNGC	7 cut(s)	41, 546, 549, 552, 571, 675, 787
FspBI	CTAG	2 cut(s)	399, 639
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	7 cut(s)	41, 546, 549, 552, 571, 675, 787
GsuI	CTGGAG	3 cut(s)	84, 459, 880
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	3 cut(s)	74, 200, 878
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	3 cut(s)	629, 668, 746
HphI	GGTGA	3 cut(s)	502, 585, 677
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188I	TCNGA	3 cut(s)	166, 527, 577
Hpy188III	TCNNGA	7 cut(s)	6, 48, 101, 356, 639, 875, 897
Hpy8I	GTNNAC	1 cut(s)	690
HpyAV	CCTTC	2 cut(s)	260, 711
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	136, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 551
HpyF3I	CTNAG	2 cut(s)	616, 865
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	74, 200, 878
HspAI	GCGC	1 cut(s)	677
Kzo9I	GATC	2 cut(s)	55, 871
LmnI	GCTCC	2 cut(s)	103, 440
Lsp1109I	GCAGC	6 cut(s)	557, 560, 563, 582, 661, 773
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	399, 639
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	224, 703
MalI	GATC	2 cut(s)	57, 873
MboI	GATC	2 cut(s)	55, 871
MboII	GAAGA	3 cut(s)	414, 632, 854
MfeI	CAATTG	1 cut(s)	485
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	9 cut(s)	82, 181, 333, 485, 496, 507, 656, 803, 811
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	355, 461, 465
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	2 cut(s)	116, 336
MspA1I	CMGCKG	2 cut(s)	503, 674
MunI	CAATTG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	40, 551
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	2 cut(s)	55, 871
NlaIII	CATG	3 cut(s)	74, 200, 878
NlaIV	GGNNCC	1 cut(s)	366
NsbI	TGCGCA	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	385
PagI	TCATGA	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	629, 668
PkrI	GCNGC	7 cut(s)	42, 547, 550, 553, 572, 676, 788
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PsiI	TTATAA	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	63, 823
RsaNI	GTAC	2 cut(s)	62, 822
SaqAI	TTAA	2 cut(s)	116, 336
SatI	GCNGC	7 cut(s)	41, 546, 549, 552, 571, 675, 787
Sau3AI	GATC	2 cut(s)	55, 871
SchI	GAGTC	1 cut(s)	755
SfaNI	GCATC	1 cut(s)	370
Sse9I	AATT	9 cut(s)	82, 181, 333, 485, 496, 507, 656, 803, 811
SsiI	CCGC	3 cut(s)	40, 188, 501
SspMI	CTAG	2 cut(s)	399, 639
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	29
TasI	AATT	9 cut(s)	82, 181, 333, 485, 496, 507, 656, 803, 811
TatI	WGTACW	2 cut(s)	61, 821
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	629, 668
Tru1I	TTAA	2 cut(s)	116, 336
Tru9I	TTAA	2 cut(s)	116, 336
TscAI	CASTG	3 cut(s)	242, 631, 774
TseI	GCWGC	6 cut(s)	545, 548, 551, 570, 674, 786
TspDTI	ATGAA	6 cut(s)	131, 150, 509, 621, 855, 891
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	3 cut(s)	242, 631, 774
XapI	RAATTY	2 cut(s)	181, 496
XbaI	TCTAGA	1 cut(s)	638
XspI	CTAG	2 cut(s)	399, 639
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.