Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027902.1

Orthogroup ID

OG0006411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1186

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027902.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtctggcagcaaagtgcttttaacatacaagcgaaagcggcactcaagaaatgatcttctacaggaagatgggtgtcataattcaccttctgacgctaatgaggatacttatttatctaggccggacatacaagtgcatttgattgatgagaatgcatcagaagaatatgaaacaaagactacagtatgccgtctatgtgttgtatgctgtgtcggaggtaacctgacgcactgtgataaatgtcttcagtcttatcatcttgaatgcctagataagtccctcaagcatactggtcatggaacattgctaagctgtgggtgtattactgcttcattgggtgatgatggtaatgtgggaaagggggcagttagctttgatgatagttcattaaggttgaattcatcaaacttggaagagactgatttgtttgctgaaattaagttagagaactcatgtgatgatctatctgtacaaaccaagtggaaaactccattacttactttccaccggagatataaaagaaaaaaagatatggatgggtctcacatacaaagcaaatcactgaatgtggaaaataactgttcagtgataacagaatcaaaaaattctgcatgtgccaaaaccacttcatgtgaagcaacttcccttgaaagcttctcactagatcatggagcagatttaaacccctgcaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.74

Weight (kDa)

5.68

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006411)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00980 FvH4_6g00980 FvH4_6g00980
malus_domestica	MD04G1165900.v1.1 MD04G1239500.v1.1 MD12G1256600.v1.1
prunus_persica	Prupe.3G301900_v2.0.a1 Prupe.3G302000_v2.0.a1 Prupe.6G052100_v2.0.a1 Prupe.6G357400_v2.0.a1 Prupe.6G357700_v2.0.a1
pyrus_communis	pycom04g14760 pycom04g21150 pycom12g23530
rosa_chinensis	RchiOBHm_Chr3g0448441
rosa_laevigata	RLG00000025914
rosa_multiflora	Rmu_sc0003308.1_g000010 Rmu_sc0011979.1_g000002 Rmu_sc0024371.1_g000001 Rmu_sc0027902.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426630
rosa_rugosa	Rorug02G0612500
rosa_samantha	Rh3AG011900 Rh3BG011700 Rh3CG011400 Rh3DG012100
rosa_wichuraiana	Rw3G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	400, 607
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	266, 400, 653
AluBI	AGCT	3 cut(s)	315, 375, 657
AluI	AGCT	3 cut(s)	315, 375, 657
Alw26I	GTCTC	2 cut(s)	413, 549
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	400, 607
AsuHPI	GGTGA	2 cut(s)	78, 353
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	3 cut(s)	65, 341, 533
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	413, 549
BfaI	CTAG	3 cut(s)	120, 272, 665
BfmI	CTRYAG	2 cut(s)	62, 183
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	10, 41
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	2 cut(s)	11, 42
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	2 cut(s)	31, 269
BsaI	GGTCTC	1 cut(s)	549
BsaWI	WCCGGW	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	125, 511
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	413, 549
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	2 cut(s)	160, 272
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	55, 463, 667
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	55, 463, 667
Bst4CI	ACNGT	3 cut(s)	187, 236, 584
Bst6I	CTCTTC	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	311
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	58, 466, 670
BstMAI	GTCTC	2 cut(s)	413, 549
BstMBI	GATC	3 cut(s)	55, 463, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	618
BstPI	GGTNACC	1 cut(s)	221
BstSFI	CTRYAG	2 cut(s)	62, 183
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	232, 563, 594
CseI	GACGC	2 cut(s)	104, 238
Csp6I	GTAC	1 cut(s)	473
CspCI	CAANNNNNGTGG	2 cut(s)	464, 499
CviAII	CATG	5 cut(s)	299, 456, 615, 633, 671
CviJI	RGCY	4 cut(s)	124, 315, 375, 657
CviKI_1	RGCY	4 cut(s)	124, 315, 375, 657
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	57, 465, 669
DpnII	GATC	3 cut(s)	55, 463, 667
DraI	TTTAAA	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	160
FaeI	CATG	5 cut(s)	302, 459, 618, 636, 674
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	5 cut(s)	298, 455, 614, 632, 670
Fnu4HI	GCNGC	2 cut(s)	10, 41
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	2 cut(s)	10, 41
FspBI	CTAG	3 cut(s)	120, 272, 665
GluI	GCNGC	2 cut(s)	10, 41
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	125, 511
HgaI	GACGC	2 cut(s)	104, 238
Hin1II	CATG	5 cut(s)	302, 459, 618, 636, 674
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	125, 511
HphI	GGTGA	2 cut(s)	78, 353
Hpy188I	TCNGA	3 cut(s)	94, 163, 218
Hpy188III	TCNNGA	2 cut(s)	48, 263
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	3 cut(s)	187, 236, 584
HpyCH4V	TGCA	4 cut(s)	139, 158, 614, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	302, 459, 618, 636, 674
Kzo9I	GATC	3 cut(s)	55, 463, 667
LmnI	GCTCC	1 cut(s)	674
LpnPI	CCDG	5 cut(s)	50, 138, 239, 279, 524
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	3 cut(s)	120, 272, 665
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	57, 465, 669
MboI	GATC	3 cut(s)	55, 463, 667
MboII	GAAGA	5 cut(s)	50, 80, 176, 239, 428
MluCI	AATT	4 cut(s)	82, 400, 438, 607
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	97, 212, 293
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	4 cut(s)	23, 392, 441, 683
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	2 cut(s)	125, 511
Mva1269I	GAATGC	2 cut(s)	160, 272
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	3 cut(s)	55, 463, 667
NlaIII	CATG	5 cut(s)	302, 459, 618, 636, 674
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	1 cut(s)	618
PctI	GAATGC	2 cut(s)	160, 272
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	2 cut(s)	11, 42
PspEI	GGTNACC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	23, 392, 441, 683
SatI	GCNGC	2 cut(s)	10, 41
Sau3AI	GATC	3 cut(s)	55, 463, 667
SetI	ASST	7 cut(s)	91, 223, 228, 317, 377, 398, 659
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	2 cut(s)	62, 183
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	46, 284
SmoI	CTYRAG	2 cut(s)	46, 284
Sse9I	AATT	4 cut(s)	82, 400, 438, 607
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	3 cut(s)	120, 272, 665
TaaI	ACNGT	3 cut(s)	187, 236, 584
TasI	AATT	4 cut(s)	82, 400, 438, 607
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	4 cut(s)	23, 392, 441, 683
Tru9I	TTAA	4 cut(s)	23, 392, 441, 683
TscAI	CASTG	3 cut(s)	239, 570, 594
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	5 cut(s)	186, 324, 378, 393, 621
TspRI	CASTG	3 cut(s)	239, 570, 594
XapI	RAATTY	2 cut(s)	400, 607
XceI	RCATGY	1 cut(s)	618
XspI	CTAG	3 cut(s)	120, 272, 665
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.