mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20980 AT4G20980 AT4G20980 AT4G20980 AT5G44320 |
| fragaria_vesca | FvH4_3g37950 FvH4_5g27490 |
| malus_domestica | MD05G1338100.v1.1 |
| prunus_persica | Prupe.4G048700_v2.0.a1 |
| pyrus_communis | pycom10g24520 |
| rosa_chinensis | RchiOBHm_Chr5g0048541 |
| rosa_laevigata | RLG00000034531 |
| rosa_multiflora | Rmu_sc0007341.1_g000041 |
| rosa_roxburghii | Rroxscaffold_1G00033270 |
| rosa_rugosa | Rorug05G0239400 |
| rosa_samantha | Rh5AG319100 Rh5BG329500 Rh5CG355200 Rh5DG340700 |
| rosa_wichuraiana | Rw0G021230 Rw5G029840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 362, 695 |
| Acc36I | ACCTGC | 2 cut(s) | 579, 967 |
| AccBSI | CCGCTC | 1 cut(s) | 397 |
| AccI | GTMKAC | 1 cut(s) | 276 |
| AccII | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| AclWI | GGATC | 4 cut(s) | 155, 511, 1181, 1547 |
| AcoI | YGGCCR | 2 cut(s) | 1248, 1308 |
| AcsI | RAATTY | 1 cut(s) | 1409 |
| AcuI | CTGAAG | 1 cut(s) | 921 |
| AcyI | GRCGYC | 2 cut(s) | 27, 258 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 305, 318, 378 |
| AflII | CTTAAG | 1 cut(s) | 1259 |
| AgeI | ACCGGT | 1 cut(s) | 429 |
| AgsI | TTSAA | 8 cut(s) | 37, 172, 472, 491, 655, 673, 1088, 1489 |
| AjnI | CCWGG | 2 cut(s) | 299, 776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 305, 337 |
| AluBI | AGCT | 7 cut(s) | 340, 541, 728, 1084, 1258, 1301, 1697 |
| AluI | AGCT | 7 cut(s) | 340, 541, 728, 1084, 1258, 1301, 1697 |
| Alw26I | GTCTC | 3 cut(s) | 275, 872, 1220 |
| AlwI | GGATC | 4 cut(s) | 155, 511, 1181, 1547 |
| Ama87I | CYCGRG | 3 cut(s) | 494, 590, 644 |
| AoxI | GGCC | 6 cut(s) | 52, 307, 384, 399, 1248, 1308 |
| ApaI | GGGCCC | 2 cut(s) | 56, 403 |
| ApeKI | GCWGC | 7 cut(s) | 328, 331, 337, 947, 973, 1652, 1655 |
| ApoI | RAATTY | 1 cut(s) | 1409 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 215, 247, 465, 497 |
| AseI | ATTAAT | 1 cut(s) | 1425 |
| AsiGI | ACCGGT | 1 cut(s) | 429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 668 |
| AspLEI | GCGC | 6 cut(s) | 68, 131, 297, 773, 775, 1174 |
| AsuC2I | CCSGG | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 3 cut(s) | 338, 670, 1052 |
| AsuII | TTCGAA | 1 cut(s) | 15 |
| AvaI | CYCGRG | 3 cut(s) | 494, 590, 644 |
| AvaII | GGWCC | 9 cut(s) | 159, 186, 432, 511, 553, 568, 606, 1516, 1549 |
| AxyI | CCTNAGG | 1 cut(s) | 1530 |
| BaeGI | GKGCMC | 2 cut(s) | 56, 403 |
| BalI | TGGCCA | 2 cut(s) | 1250, 1310 |
| BanII | GRGCYC | 4 cut(s) | 56, 403, 591, 1020 |
| BauI | CACGAG | 1 cut(s) | 875 |
| BbsI | GAAGAC | 2 cut(s) | 202, 646 |
| BbvI | GCAGC | 7 cut(s) | 340, 343, 349, 934, 985, 1639, 1642 |
| BccI | CCATC | 3 cut(s) | 839, 986, 1622 |
| BceAI | ACGGC | 1 cut(s) | 1573 |
| BciT130I | CCWGG | 2 cut(s) | 301, 778 |
| BclI | TGATCA | 1 cut(s) | 1360 |
| BcnI | CCSGG | 1 cut(s) | 184 |
| BcoDI | GTCTC | 3 cut(s) | 275, 872, 1220 |
| BfmI | CTRYAG | 3 cut(s) | 729, 1069, 1620 |
| BfoI | RGCGCY | 1 cut(s) | 69 |
| BfrI | CTTAAG | 1 cut(s) | 1259 |
| BfuAI | ACCTGC | 2 cut(s) | 579, 967 |
| BlpI | GCTNAGC | 1 cut(s) | 1641 |
| Bme1390I | CCNGG | 3 cut(s) | 184, 301, 778 |
| Bme18I | GGWCC | 9 cut(s) | 159, 186, 432, 511, 553, 568, 606, 1516, 1549 |
| BmeT110I | CYCGRG | 3 cut(s) | 494, 590, 644 |
| BmrFI | CCNGG | 3 cut(s) | 184, 301, 778 |
| BmrI | ACTGGG | 1 cut(s) | 689 |
| BmsI | GCATC | 2 cut(s) | 1103, 1549 |
| BmuI | ACTGGG | 1 cut(s) | 689 |
| BpiI | GAAGAC | 2 cut(s) | 202, 646 |
| BpmI | CTGGAG | 1 cut(s) | 1539 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1641 |
| Bpu14I | TTCGAA | 1 cut(s) | 15 |
| BpuEI | CTTGAG | 3 cut(s) | 955, 1281, 1677 |
| BpuMI | CCSGG | 1 cut(s) | 184 |
| BsaHI | GRCGYC | 2 cut(s) | 27, 258 |
| BsaI | GGTCTC | 1 cut(s) | 1220 |
| BsaJI | CCNNGG | 5 cut(s) | 299, 462, 776, 906, 1404 |
| BsaWI | WCCGGW | 3 cut(s) | 58, 429, 1594 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1574, 1604 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 305, 318, 378 |
| Bse118I | RCCGGY | 2 cut(s) | 411, 429 |
| Bse1I | ACTGG | 3 cut(s) | 161, 695, 1311 |
| Bse21I | CCTNAGG | 1 cut(s) | 1530 |
| Bse3DI | GCAATG | 1 cut(s) | 893 |
| BseBI | CCWGG | 2 cut(s) | 301, 778 |
| BseDI | CCNNGG | 5 cut(s) | 299, 462, 776, 906, 1404 |
| BseGI | GGATG | 4 cut(s) | 916, 997, 1351, 1633 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 305, 318, 378 |
| BseMI | GCAATG | 1 cut(s) | 893 |
| BseMII | CTCAG | 4 cut(s) | 899, 1245, 1544, 1632 |
| BseNI | ACTGG | 3 cut(s) | 161, 695, 1311 |
| BsePI | GCGCGC | 1 cut(s) | 771 |
| BseRI | GAGGAG | 3 cut(s) | 566, 1058, 1598 |
| BseSI | GKGCMC | 2 cut(s) | 56, 403 |
| BseXI | GCAGC | 7 cut(s) | 340, 343, 349, 934, 985, 1639, 1642 |
| BseYI | CCCAGC | 1 cut(s) | 178 |
| Bsh1236I | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| Bsh1285I | CGRYCG | 4 cut(s) | 412, 483, 604, 616 |
| BshFI | GGCC | 6 cut(s) | 54, 309, 386, 401, 1250, 1310 |
| BshTI | ACCGGT | 1 cut(s) | 429 |
| BsiEI | CGRYCG | 4 cut(s) | 412, 483, 604, 616 |
| BsiHKCI | CYCGRG | 3 cut(s) | 494, 590, 644 |
| BsiSI | CCGG | 5 cut(s) | 59, 184, 412, 430, 1595 |
| BslFI | GGGAC | 5 cut(s) | 14, 92, 431, 539, 1535 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 305, 318, 378 |
| BsmAI | GTCTC | 3 cut(s) | 275, 872, 1220 |
| BsmBI | CGTCTC | 1 cut(s) | 275 |
| BsmFI | GGGAC | 5 cut(s) | 14, 92, 431, 539, 1535 |
| BsmI | GAATGC | 1 cut(s) | 1174 |
| BsnI | GGCC | 6 cut(s) | 54, 309, 386, 401, 1250, 1310 |
| Bso31I | GGTCTC | 1 cut(s) | 1220 |
| BsoBI | CYCGRG | 3 cut(s) | 494, 590, 644 |
| Bsp119I | TTCGAA | 1 cut(s) | 15 |
| Bsp120I | GGGCCC | 2 cut(s) | 52, 399 |
| Bsp1286I | GDGCHC | 4 cut(s) | 56, 403, 591, 1020 |
| Bsp143I | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1641 |
| BspANI | GGCC | 6 cut(s) | 54, 309, 386, 401, 1250, 1310 |
| BspCNI | CTCAG | 4 cut(s) | 898, 1246, 1543, 1633 |
| BspFNI | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| BspMI | ACCTGC | 2 cut(s) | 579, 967 |
| BspPI | GGATC | 4 cut(s) | 155, 511, 1181, 1547 |
| BspT104I | TTCGAA | 1 cut(s) | 15 |
| BspTI | CTTAAG | 1 cut(s) | 1259 |
| BspTNI | GGTCTC | 1 cut(s) | 1220 |
| BsrBI | CCGCTC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 893 |
| BsrFI | RCCGGY | 2 cut(s) | 411, 429 |
| BsrI | ACTGG | 3 cut(s) | 161, 695, 1311 |
| BssAI | RCCGGY | 2 cut(s) | 411, 429 |
| BssECI | CCNNGG | 5 cut(s) | 299, 462, 776, 906, 1404 |
| BssHII | GCGCGC | 1 cut(s) | 771 |
| BssMI | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| BssNI | GRCGYC | 2 cut(s) | 27, 258 |
| BssSI | CACGAG | 1 cut(s) | 875 |
| BssT1I | CCWWGG | 2 cut(s) | 906, 1404 |
| Bst2BI | CACGAG | 1 cut(s) | 875 |
| Bst2UI | CCWGG | 2 cut(s) | 301, 778 |
| Bst4CI | ACNGT | 2 cut(s) | 733, 1442 |
| Bst6I | CTCTTC | 1 cut(s) | 1083 |
| BstACI | GRCGYC | 2 cut(s) | 27, 258 |
| BstAFI | CTTAAG | 1 cut(s) | 1259 |
| BstBI | TTCGAA | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 3 cut(s) | 399, 403, 773 |
| BstDEI | CTNAG | 5 cut(s) | 885, 1254, 1524, 1530, 1641 |
| BstDSI | CCRYGG | 1 cut(s) | 462 |
| BstEII | GGTNACC | 1 cut(s) | 676 |
| BstF5I | GGATG | 4 cut(s) | 916, 997, 1351, 1633 |
| BstFNI | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| BstH2I | RGCGCY | 1 cut(s) | 69 |
| BstHHI | GCGC | 6 cut(s) | 68, 131, 297, 773, 775, 1174 |
| BstKTI | GATC | 7 cut(s) | 150, 519, 604, 616, 1189, 1363, 1542 |
| BstMAI | GTCTC | 3 cut(s) | 275, 872, 1220 |
| BstMBI | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| BstMCI | CGRYCG | 4 cut(s) | 412, 483, 604, 616 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 292, 325, 334, 337, 1058, 1247, 1307, 1612, 1694 |
| BstNI | CCWGG | 2 cut(s) | 301, 778 |
| BstNSI | RCATGY | 1 cut(s) | 508 |
| BstPI | GGTNACC | 1 cut(s) | 676 |
| BstSCI | CCNGG | 3 cut(s) | 182, 299, 776 |
| BstSFI | CTRYAG | 3 cut(s) | 729, 1069, 1620 |
| BstSLI | GKGCMC | 2 cut(s) | 56, 403 |
| BstUI | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| BstV1I | GCAGC | 7 cut(s) | 340, 343, 349, 934, 985, 1639, 1642 |
| BstV2I | GAAGAC | 2 cut(s) | 202, 646 |
| BstX2I | RGATCY | 2 cut(s) | 516, 1539 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 48 |
| BstYI | RGATCY | 2 cut(s) | 516, 1539 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1530 |
| BsuRI | GGCC | 6 cut(s) | 54, 309, 386, 401, 1250, 1310 |
| BtgI | CCRYGG | 1 cut(s) | 462 |
| BtsCI | GGATG | 4 cut(s) | 916, 997, 1351, 1633 |
| BtsIMutI | CAGTG | 3 cut(s) | 741, 1251, 1318 |
| BveI | ACCTGC | 2 cut(s) | 579, 967 |
| Cac8I | GCNNGC | 3 cut(s) | 399, 403, 773 |
| CfoI | GCGC | 6 cut(s) | 68, 131, 297, 773, 775, 1174 |
| Cfr10I | RCCGGY | 2 cut(s) | 411, 429 |
| Cfr42I | CCGCGG | 1 cut(s) | 465 |
| CseI | GACGC | 2 cut(s) | 16, 266 |
| CspAI | ACCGGT | 1 cut(s) | 429 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 479, 514 |
| CviAII | CATG | 5 cut(s) | 424, 505, 766, 1132, 1373 |
| DdeI | CTNAG | 5 cut(s) | 885, 1254, 1524, 1530, 1641 |
| DpnI | GATC | 7 cut(s) | 149, 518, 603, 615, 1188, 1362, 1541 |
| DpnII | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 362, 695 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 362, 695 |
| EaeI | YGGCCR | 2 cut(s) | 1248, 1308 |
| Eam1104I | CTCTTC | 1 cut(s) | 1083 |
| EarI | CTCTTC | 1 cut(s) | 1083 |
| EciI | GGCGGA | 1 cut(s) | 235 |
| Eco130I | CCWWGG | 2 cut(s) | 906, 1404 |
| Eco24I | GRGCYC | 4 cut(s) | 56, 403, 591, 1020 |
| Eco31I | GGTCTC | 1 cut(s) | 1220 |
| Eco32I | GATATC | 2 cut(s) | 799, 916 |
| Eco47I | GGWCC | 9 cut(s) | 159, 186, 432, 511, 553, 568, 606, 1516, 1549 |
| Eco57I | CTGAAG | 1 cut(s) | 921 |
| Eco81I | CCTNAGG | 1 cut(s) | 1530 |
| Eco88I | CYCGRG | 3 cut(s) | 494, 590, 644 |
| Eco91I | GGTNACC | 1 cut(s) | 676 |
| EcoO109I | RGGNCCY | 4 cut(s) | 52, 568, 1516, 1549 |
| EcoO65I | GGTNACC | 1 cut(s) | 676 |
| EcoRII | CCWGG | 2 cut(s) | 299, 776 |
| EcoRV | GATATC | 2 cut(s) | 799, 916 |
| EcoT14I | CCWWGG | 2 cut(s) | 906, 1404 |
| EcoT38I | GRGCYC | 4 cut(s) | 56, 403, 591, 1020 |
| ErhI | CCWWGG | 2 cut(s) | 906, 1404 |
| Esp3I | CGTCTC | 1 cut(s) | 275 |
| FaeI | CATG | 5 cut(s) | 427, 508, 769, 1135, 1376 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 815, 847 |
| FaqI | GGGAC | 5 cut(s) | 14, 92, 431, 539, 1535 |
| FatI | CATG | 5 cut(s) | 423, 504, 765, 1131, 1372 |
| FauI | CCCGC | 6 cut(s) | 134, 170, 297, 372, 390, 410 |
| FbaI | TGATCA | 1 cut(s) | 1360 |
| FblI | GTMKAC | 1 cut(s) | 276 |
| FokI | GGATG | 4 cut(s) | 923, 1004, 1338, 1640 |
| FriOI | GRGCYC | 4 cut(s) | 56, 403, 591, 1020 |
| GlaI | GCGC | 6 cut(s) | 67, 130, 296, 772, 774, 1173 |
| GsaI | CCCAGC | 1 cut(s) | 182 |
| GsuI | CTGGAG | 1 cut(s) | 1539 |
| HaeII | RGCGCY | 1 cut(s) | 69 |
| HaeIII | GGCC | 6 cut(s) | 54, 309, 386, 401, 1250, 1310 |
| HapII | CCGG | 5 cut(s) | 59, 184, 412, 430, 1595 |
| HgaI | GACGC | 2 cut(s) | 16, 266 |
| HhaI | GCGC | 6 cut(s) | 68, 131, 297, 773, 775, 1174 |
| Hin1I | GRCGYC | 2 cut(s) | 27, 258 |
| Hin1II | CATG | 5 cut(s) | 427, 508, 769, 1135, 1376 |
| Hin6I | GCGC | 6 cut(s) | 66, 129, 295, 771, 773, 1172 |
| HinP1I | GCGC | 6 cut(s) | 66, 129, 295, 771, 773, 1172 |
| HincII | GTYRAC | 3 cut(s) | 277, 1141, 1471 |
| HindII | GTYRAC | 3 cut(s) | 277, 1141, 1471 |
| HindIII | AAGCTT | 2 cut(s) | 1082, 1695 |
| HinfI | GANTC | 7 cut(s) | 203, 230, 618, 642, 658, 760, 1162 |
| HpaII | CCGG | 5 cut(s) | 59, 184, 412, 430, 1595 |
| HphI | GGTGA | 3 cut(s) | 338, 670, 1052 |
| Hpy166II | GTNNAC | 4 cut(s) | 277, 874, 1141, 1471 |
| Hpy188I | TCNGA | 8 cut(s) | 23, 147, 202, 663, 1125, 1149, 1167, 1431 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 220, 655, 757, 875, 887, 1556 |
| Hpy8I | GTNNAC | 4 cut(s) | 277, 874, 1141, 1471 |
| Hpy99I | CGWCG | 7 cut(s) | 202, 230, 260, 278, 281, 359, 692 |
| HpyAV | CCTTC | 5 cut(s) | 121, 178, 385, 1031, 1068 |
| HpyCH4III | ACNGT | 2 cut(s) | 733, 1442 |
| HpyCH4IV | ACGT | 2 cut(s) | 105, 841 |
| HpyCH4V | TGCA | 2 cut(s) | 713, 1658 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 292, 325, 334, 337, 1058, 1247, 1307, 1612, 1694 |
| HpyF3I | CTNAG | 5 cut(s) | 885, 1254, 1524, 1530, 1641 |
| HpySE526I | ACGT | 2 cut(s) | 105, 841 |
| Hsp92I | GRCGYC | 2 cut(s) | 27, 258 |
| Hsp92II | CATG | 5 cut(s) | 427, 508, 769, 1135, 1376 |
| HspAI | GCGC | 6 cut(s) | 66, 129, 295, 771, 773, 1172 |
| Ksp22I | TGATCA | 1 cut(s) | 1360 |
| KspI | CCGCGG | 1 cut(s) | 465 |
| Kzo9I | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| LmnI | GCTCC | 4 cut(s) | 394, 579, 889, 1585 |
| Lsp1109I | GCAGC | 7 cut(s) | 340, 343, 349, 934, 985, 1639, 1642 |
| LweI | GCATC | 2 cut(s) | 1103, 1549 |
| MaeII | ACGT | 2 cut(s) | 105, 841 |
| MaeIII | GTNAC | 3 cut(s) | 676, 1003, 1590 |
| MalI | GATC | 7 cut(s) | 149, 518, 603, 615, 1188, 1362, 1541 |
| MbiI | CCGCTC | 1 cut(s) | 397 |
| MboI | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| MboII | GAAGA | 7 cut(s) | 202, 371, 651, 661, 823, 1100, 1610 |
| MflI | RGATCY | 2 cut(s) | 516, 1539 |
| MhlI | GDGCHC | 4 cut(s) | 56, 403, 591, 1020 |
| MlsI | TGGCCA | 2 cut(s) | 1250, 1310 |
| MluCI | AATT | 3 cut(s) | 919, 1409, 1484 |
| MluNI | TGGCCA | 2 cut(s) | 1250, 1310 |
| MlyI | GAGTC | 4 cut(s) | 239, 636, 754, 1156 |
| MmeI | TCCRAC | 6 cut(s) | 114, 125, 180, 837, 1203, 1372 |
| Mox20I | TGGCCA | 2 cut(s) | 1250, 1310 |
| MroXI | GAANNNNTTC | 1 cut(s) | 668 |
| MscI | TGGCCA | 2 cut(s) | 1250, 1310 |
| MseI | TTAA | 7 cut(s) | 957, 1176, 1260, 1368, 1425, 1512, 1699 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1356 |
| Msp20I | TGGCCA | 2 cut(s) | 1250, 1310 |
| MspA1I | CMGCKG | 2 cut(s) | 334, 464 |
| MspCI | CTTAAG | 1 cut(s) | 1259 |
| MspI | CCGG | 5 cut(s) | 59, 184, 412, 430, 1595 |
| MspR9I | CCNGG | 3 cut(s) | 184, 301, 778 |
| Mva1269I | GAATGC | 1 cut(s) | 1174 |
| MvaI | CCWGG | 2 cut(s) | 301, 778 |
| MvnI | CGCG | 8 cut(s) | 129, 295, 354, 408, 456, 464, 773, 1357 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 292, 325, 334, 337, 1058, 1247, 1307, 1612, 1694 |
| NciI | CCSGG | 1 cut(s) | 184 |
| NdeII | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| NlaIII | CATG | 5 cut(s) | 427, 508, 769, 1135, 1376 |
| NmeAIII | GCCGAG | 1 cut(s) | 412 |
| NmuCI | GTSAC | 1 cut(s) | 676 |
| NspI | RCATGY | 1 cut(s) | 508 |
| NspV | TTCGAA | 1 cut(s) | 15 |
| PaeR7I | CTCGAG | 2 cut(s) | 590, 644 |
| PauI | GCGCGC | 1 cut(s) | 771 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 12, 363, 597 |
| PctI | GAATGC | 1 cut(s) | 1174 |
| PdmI | GAANNNNTTC | 1 cut(s) | 668 |
| PfeI | GAWTC | 3 cut(s) | 203, 618, 658 |
| PflFI | GACNNNGTC | 1 cut(s) | 695 |
| PinAI | ACCGGT | 1 cut(s) | 429 |
| Ple19I | CGATCG | 2 cut(s) | 604, 616 |
| PleI | GAGTC | 4 cut(s) | 238, 636, 754, 1156 |
| PpsI | GAGTC | 4 cut(s) | 238, 636, 754, 1156 |
| PpuMI | RGGWCCY | 3 cut(s) | 568, 1516, 1549 |
| PshBI | ATTAAT | 1 cut(s) | 1425 |
| Psp5II | RGGWCCY | 3 cut(s) | 568, 1516, 1549 |
| Psp6I | CCWGG | 2 cut(s) | 299, 776 |
| PspEI | GGTNACC | 1 cut(s) | 676 |
| PspFI | CCCAGC | 1 cut(s) | 178 |
| PspGI | CCWGG | 2 cut(s) | 299, 776 |
| PspOMI | GGGCCC | 2 cut(s) | 52, 399 |
| PspPPI | RGGWCCY | 3 cut(s) | 568, 1516, 1549 |
| PspXI | VCTCGAGB | 2 cut(s) | 590, 644 |
| PsuI | RGATCY | 2 cut(s) | 516, 1539 |
| PsyI | GACNNNGTC | 1 cut(s) | 695 |
| PteI | GCGCGC | 1 cut(s) | 771 |
| PvuI | CGATCG | 2 cut(s) | 604, 616 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1356 |
| SacII | CCGCGG | 1 cut(s) | 465 |
| SalI | GTCGAC | 1 cut(s) | 275 |
| SaqAI | TTAA | 7 cut(s) | 957, 1176, 1260, 1368, 1425, 1512, 1699 |
| Sau3AI | GATC | 7 cut(s) | 147, 516, 601, 613, 1186, 1360, 1539 |
| SchI | GAGTC | 4 cut(s) | 239, 636, 754, 1156 |
| ScrFI | CCNGG | 3 cut(s) | 184, 301, 778 |
| SduI | GDGCHC | 4 cut(s) | 56, 403, 591, 1020 |
| SfaNI | GCATC | 2 cut(s) | 1103, 1549 |
| SfcI | CTRYAG | 3 cut(s) | 729, 1069, 1620 |
| Sfr274I | CTCGAG | 2 cut(s) | 590, 644 |
| Sfr303I | CCGCGG | 1 cut(s) | 465 |
| SfuI | TTCGAA | 1 cut(s) | 15 |
| SgrBI | CCGCGG | 1 cut(s) | 465 |
| SgrDI | CGTCGACG | 1 cut(s) | 275 |
| SinI | GGWCC | 9 cut(s) | 159, 186, 432, 511, 553, 568, 606, 1516, 1549 |
| SlaI | CTCGAG | 2 cut(s) | 590, 644 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1356 |
| SmlI | CTYRAG | 6 cut(s) | 590, 644, 934, 1259, 1296, 1692 |
| SmoI | CTYRAG | 6 cut(s) | 590, 644, 934, 1259, 1296, 1692 |
| Sse9I | AATT | 3 cut(s) | 919, 1409, 1484 |
| StyD4I | CCNGG | 3 cut(s) | 182, 299, 776 |
| StyI | CCWWGG | 2 cut(s) | 906, 1404 |
| TaaI | ACNGT | 2 cut(s) | 733, 1442 |
| TaiI | ACGT | 2 cut(s) | 108, 844 |
| TaqII | GACCGA | 3 cut(s) | 469, 541, 594 |
| TasI | AATT | 3 cut(s) | 919, 1409, 1484 |
| TauI | GCSGC | 6 cut(s) | 295, 337, 354, 408, 456, 464 |
| TfiI | GAWTC | 3 cut(s) | 203, 618, 658 |
| Tru1I | TTAA | 7 cut(s) | 957, 1176, 1260, 1368, 1425, 1512, 1699 |
| Tru9I | TTAA | 7 cut(s) | 957, 1176, 1260, 1368, 1425, 1512, 1699 |
| TscAI | CASTG | 3 cut(s) | 748, 1258, 1318 |
| TseFI | GTSAC | 1 cut(s) | 676 |
| TseI | GCWGC | 7 cut(s) | 328, 331, 337, 947, 973, 1652, 1655 |
| Tsp45I | GTSAC | 1 cut(s) | 676 |
| TspDTI | ATGAA | 5 cut(s) | 440, 1050, 1340, 1340, 1496 |
| TspGWI | ACGGA | 2 cut(s) | 257, 294 |
| TspRI | CASTG | 3 cut(s) | 748, 1258, 1318 |
| Tth111I | GACNNNGTC | 1 cut(s) | 695 |
| Vha464I | CTTAAG | 1 cut(s) | 1259 |
| VpaK11BI | GGWCC | 9 cut(s) | 159, 186, 432, 511, 553, 568, 606, 1516, 1549 |
| VspI | ATTAAT | 1 cut(s) | 1425 |
| XapI | RAATTY | 1 cut(s) | 1409 |
| XceI | RCATGY | 1 cut(s) | 508 |
| XhoI | CTCGAG | 2 cut(s) | 590, 644 |
| XmiI | GTMKAC | 1 cut(s) | 276 |
| XmnI | GAANNNNTTC | 1 cut(s) | 668 |