mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20980 AT4G20980 AT4G20980 AT4G20980 AT5G44320 |
| fragaria_vesca | FvH4_3g37950 FvH4_5g27490 |
| malus_domestica | MD05G1338100.v1.1 |
| prunus_persica | Prupe.4G048700_v2.0.a1 |
| pyrus_communis | pycom10g24520 |
| rosa_chinensis | RchiOBHm_Chr5g0048541 |
| rosa_laevigata | RLG00000034531 |
| rosa_multiflora | Rmu_sc0007341.1_g000041 |
| rosa_roxburghii | Rroxscaffold_1G00033270 |
| rosa_rugosa | Rorug05G0239400 |
| rosa_samantha | Rh5AG319100 Rh5BG329500 Rh5CG355200 Rh5DG340700 |
| rosa_wichuraiana | Rw0G021230 Rw5G029840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 362 |
| Acc36I | ACCTGC | 1 cut(s) | 928 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1407 |
| AccBSI | CCGCTC | 2 cut(s) | 129, 610 |
| AccI | GTMKAC | 1 cut(s) | 276 |
| AccII | CGCG | 3 cut(s) | 295, 354, 381 |
| AclWI | GGATC | 8 cut(s) | 155, 426, 537, 647, 706, 1142, 1472, 1485 |
| AcoI | YGGCCR | 2 cut(s) | 1209, 1591 |
| AcsI | RAATTY | 3 cut(s) | 302, 925, 1142 |
| AcuI | CTGAAG | 1 cut(s) | 1469 |
| AcyI | GRCGYC | 2 cut(s) | 27, 204 |
| AfaI | GTAC | 2 cut(s) | 1031, 1467 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 305, 318, 358, 1407, 1585 |
| AflII | CTTAAG | 1 cut(s) | 1220 |
| AflIII | ACRYGT | 1 cut(s) | 511 |
| AgsI | TTSAA | 9 cut(s) | 37, 172, 472, 616, 634, 1305, 1330, 1529, 1646 |
| AjnI | CCWGG | 1 cut(s) | 1395 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 305, 337, 490, 522 |
| Alw26I | GTCTC | 4 cut(s) | 548, 833, 1065, 1181 |
| AlwI | GGATC | 8 cut(s) | 155, 426, 537, 647, 706, 1142, 1472, 1485 |
| Ama87I | CYCGRG | 2 cut(s) | 524, 551 |
| AoxI | GGCC | 7 cut(s) | 52, 142, 307, 369, 1209, 1398, 1591 |
| ApaI | GGGCCC | 1 cut(s) | 56 |
| ApeKI | GCWGC | 5 cut(s) | 328, 337, 461, 908, 1616 |
| ApoI | RAATTY | 3 cut(s) | 302, 925, 1142 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 194, 226 |
| AseI | ATTAAT | 1 cut(s) | 1386 |
| AspLEI | GCGC | 5 cut(s) | 381, 548, 600, 736, 1135 |
| AspS9I | GGNCC | 7 cut(s) | 52, 53, 142, 159, 186, 308, 832 |
| AsuC2I | CCSGG | 3 cut(s) | 41, 179, 240 |
| AsuHPI | GGTGA | 2 cut(s) | 338, 1483 |
| AsuII | TTCGAA | 1 cut(s) | 15 |
| AvaI | CYCGRG | 2 cut(s) | 524, 551 |
| AvaII | GGWCC | 3 cut(s) | 159, 186, 832 |
| BaeGI | GKGCMC | 1 cut(s) | 56 |
| BalI | TGGCCA | 2 cut(s) | 1211, 1593 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanII | GRGCYC | 5 cut(s) | 56, 403, 525, 855, 981 |
| BauI | CACGAG | 2 cut(s) | 836, 1317 |
| BbsI | GAAGAC | 2 cut(s) | 202, 687 |
| BbvI | GCAGC | 5 cut(s) | 340, 349, 448, 895, 1603 |
| BccI | CCATC | 4 cut(s) | 800, 947, 1489, 1583 |
| BceAI | ACGGC | 5 cut(s) | 61, 191, 390, 438, 449 |
| BciT130I | CCWGG | 1 cut(s) | 1397 |
| BclI | TGATCA | 1 cut(s) | 1321 |
| BcnI | CCSGG | 3 cut(s) | 41, 179, 240 |
| BcoDI | GTCTC | 4 cut(s) | 548, 833, 1065, 1181 |
| BfrI | CTTAAG | 1 cut(s) | 1220 |
| BfuAI | ACCTGC | 1 cut(s) | 928 |
| BisI | GCNGC | 9 cut(s) | 25, 293, 329, 338, 352, 462, 544, 909, 1617 |
| BlsI | GCNGC | 9 cut(s) | 26, 294, 330, 339, 353, 463, 545, 910, 1618 |
| Bme1390I | CCNGG | 4 cut(s) | 41, 179, 240, 1397 |
| Bme18I | GGWCC | 3 cut(s) | 159, 186, 832 |
| BmeT110I | CYCGRG | 2 cut(s) | 524, 551 |
| BmgT120I | GGNCC | 7 cut(s) | 52, 53, 142, 159, 186, 308, 832 |
| BmrFI | CCNGG | 4 cut(s) | 41, 179, 240, 1397 |
| BmsI | GCATC | 1 cut(s) | 1510 |
| BpiI | GAAGAC | 2 cut(s) | 202, 687 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1361, 1393 |
| BpmI | CTGGAG | 1 cut(s) | 626 |
| Bpu10I | CCTNAGC | 1 cut(s) | 519 |
| Bpu14I | TTCGAA | 1 cut(s) | 15 |
| BpuEI | CTTGAG | 1 cut(s) | 1635 |
| BpuMI | CCSGG | 3 cut(s) | 41, 179, 240 |
| BsaHI | GRCGYC | 2 cut(s) | 27, 204 |
| BsaI | GGTCTC | 2 cut(s) | 548, 833 |
| BsaJI | CCNNGG | 6 cut(s) | 238, 525, 737, 867, 1365, 1594 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1445, 1475 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 305, 318, 358, 1407, 1585 |
| Bse118I | RCCGGY | 1 cut(s) | 411 |
| Bse1I | ACTGG | 4 cut(s) | 161, 656, 1401, 1473 |
| BseBI | CCWGG | 1 cut(s) | 1397 |
| BseDI | CCNNGG | 6 cut(s) | 238, 525, 737, 867, 1365, 1594 |
| BseGI | GGATG | 4 cut(s) | 476, 1312, 1567, 1594 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 305, 318, 358, 1407, 1585 |
| BseMII | CTCAG | 7 cut(s) | 378, 510, 827, 860, 947, 1205, 1575 |
| BseNI | ACTGG | 4 cut(s) | 161, 656, 1401, 1473 |
| BseRI | GAGGAG | 2 cut(s) | 374, 989 |
| BseSI | GKGCMC | 1 cut(s) | 56 |
| BseXI | GCAGC | 5 cut(s) | 340, 349, 448, 895, 1603 |
| BseYI | CCCAGC | 2 cut(s) | 48, 139 |
| BsgI | GTGCAG | 2 cut(s) | 1239, 1620 |
| Bsh1236I | CGCG | 3 cut(s) | 295, 354, 381 |
| BshFI | GGCC | 7 cut(s) | 54, 144, 309, 371, 1211, 1400, 1593 |
| BsiHKCI | CYCGRG | 2 cut(s) | 524, 551 |
| BsiSI | CCGG | 6 cut(s) | 41, 59, 145, 179, 240, 412 |
| BslFI | GGGAC | 3 cut(s) | 14, 92, 770 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 305, 318, 358, 1407, 1585 |
| BsmAI | GTCTC | 4 cut(s) | 548, 833, 1065, 1181 |
| BsmFI | GGGAC | 3 cut(s) | 14, 92, 770 |
| BsmI | GAATGC | 1 cut(s) | 1135 |
| BsnI | GGCC | 7 cut(s) | 54, 144, 309, 371, 1211, 1400, 1593 |
| Bso31I | GGTCTC | 2 cut(s) | 548, 833 |
| BsoBI | CYCGRG | 2 cut(s) | 524, 551 |
| Bsp119I | TTCGAA | 1 cut(s) | 15 |
| Bsp120I | GGGCCC | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 5 cut(s) | 56, 403, 525, 855, 981 |
| Bsp143I | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| BspANI | GGCC | 7 cut(s) | 54, 144, 309, 371, 1211, 1400, 1593 |
| BspCNI | CTCAG | 7 cut(s) | 379, 511, 826, 859, 946, 1204, 1576 |
| BspFNI | CGCG | 3 cut(s) | 295, 354, 381 |
| BspMI | ACCTGC | 1 cut(s) | 928 |
| BspPI | GGATC | 8 cut(s) | 155, 426, 537, 647, 706, 1142, 1472, 1485 |
| BspT104I | TTCGAA | 1 cut(s) | 15 |
| BspTI | CTTAAG | 1 cut(s) | 1220 |
| BspTNI | GGTCTC | 2 cut(s) | 548, 833 |
| BsrBI | CCGCTC | 2 cut(s) | 129, 610 |
| BsrFI | RCCGGY | 1 cut(s) | 411 |
| BsrI | ACTGG | 4 cut(s) | 161, 656, 1401, 1473 |
| BssAI | RCCGGY | 1 cut(s) | 411 |
| BssECI | CCNNGG | 6 cut(s) | 238, 525, 737, 867, 1365, 1594 |
| BssMI | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| BssNI | GRCGYC | 2 cut(s) | 27, 204 |
| BssSI | CACGAG | 2 cut(s) | 836, 1317 |
| BssT1I | CCWWGG | 3 cut(s) | 867, 1365, 1594 |
| Bst2BI | CACGAG | 2 cut(s) | 836, 1317 |
| Bst2UI | CCWGG | 1 cut(s) | 1397 |
| Bst4CI | ACNGT | 3 cut(s) | 571, 694, 1052 |
| BstACI | GRCGYC | 2 cut(s) | 27, 204 |
| BstAFI | CTTAAG | 1 cut(s) | 1220 |
| BstBI | TTCGAA | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 2 cut(s) | 403, 602 |
| BstDEI | CTNAG | 8 cut(s) | 387, 519, 813, 846, 933, 1191, 1485, 1584 |
| BstF5I | GGATG | 4 cut(s) | 476, 1312, 1567, 1594 |
| BstFNI | CGCG | 3 cut(s) | 295, 354, 381 |
| BstHHI | GCGC | 5 cut(s) | 381, 548, 600, 736, 1135 |
| BstKTI | GATC | 9 cut(s) | 150, 434, 532, 577, 655, 714, 1150, 1324, 1480 |
| BstMAI | GTCTC | 4 cut(s) | 548, 833, 1065, 1181 |
| BstMBI | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 334, 337, 823, 1019, 1208, 1268, 1573 |
| BstNI | CCWGG | 1 cut(s) | 1397 |
| BstNSI | RCATGY | 1 cut(s) | 448 |
| BstSCI | CCNGG | 4 cut(s) | 39, 177, 238, 1395 |
| BstSLI | GKGCMC | 1 cut(s) | 56 |
| BstUI | CGCG | 3 cut(s) | 295, 354, 381 |
| BstV1I | GCAGC | 5 cut(s) | 340, 349, 448, 895, 1603 |
| BstV2I | GAAGAC | 2 cut(s) | 202, 687 |
| BstX2I | RGATCY | 3 cut(s) | 431, 529, 1477 |
| BstYI | RGATCY | 3 cut(s) | 431, 529, 1477 |
| BsuRI | GGCC | 7 cut(s) | 54, 144, 309, 371, 1211, 1400, 1593 |
| BtsCI | GGATG | 4 cut(s) | 476, 1312, 1567, 1594 |
| BtsIMutI | CAGTG | 3 cut(s) | 645, 702, 1057 |
| BveI | ACCTGC | 1 cut(s) | 928 |
| Cac8I | GCNNGC | 2 cut(s) | 403, 602 |
| CfoI | GCGC | 5 cut(s) | 381, 548, 600, 736, 1135 |
| Cfr10I | RCCGGY | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 7 cut(s) | 52, 53, 142, 159, 186, 308, 832 |
| CseI | GACGC | 3 cut(s) | 16, 212, 284 |
| Csp6I | GTAC | 2 cut(s) | 1030, 1466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1608, 1643 |
| CviAII | CATG | 4 cut(s) | 424, 445, 727, 1334 |
| CviQI | GTAC | 2 cut(s) | 1030, 1466 |
| DdeI | CTNAG | 8 cut(s) | 387, 519, 813, 846, 933, 1191, 1485, 1584 |
| DpnI | GATC | 9 cut(s) | 149, 433, 531, 576, 654, 713, 1149, 1323, 1479 |
| DpnII | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 362 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 362 |
| EaeI | YGGCCR | 2 cut(s) | 1209, 1591 |
| EciI | GGCGGA | 2 cut(s) | 55, 257 |
| Eco130I | CCWWGG | 3 cut(s) | 867, 1365, 1594 |
| Eco24I | GRGCYC | 5 cut(s) | 56, 403, 525, 855, 981 |
| Eco31I | GGTCTC | 2 cut(s) | 548, 833 |
| Eco32I | GATATC | 1 cut(s) | 877 |
| Eco47I | GGWCC | 3 cut(s) | 159, 186, 832 |
| Eco57I | CTGAAG | 1 cut(s) | 1469 |
| Eco88I | CYCGRG | 2 cut(s) | 524, 551 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoRII | CCWGG | 1 cut(s) | 1395 |
| EcoRV | GATATC | 1 cut(s) | 877 |
| EcoT14I | CCWWGG | 3 cut(s) | 867, 1365, 1594 |
| EcoT38I | GRGCYC | 5 cut(s) | 56, 403, 525, 855, 981 |
| ErhI | CCWWGG | 3 cut(s) | 867, 1365, 1594 |
| FaeI | CATG | 4 cut(s) | 427, 448, 730, 1337 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 776, 808 |
| FaqI | GGGAC | 3 cut(s) | 14, 92, 770 |
| FatI | CATG | 4 cut(s) | 423, 444, 726, 1333 |
| FauI | CCCGC | 3 cut(s) | 134, 170, 458 |
| FbaI | TGATCA | 1 cut(s) | 1321 |
| FblI | GTMKAC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 9 cut(s) | 25, 293, 329, 338, 352, 462, 544, 909, 1617 |
| FokI | GGATG | 4 cut(s) | 463, 1299, 1574, 1601 |
| FriOI | GRGCYC | 5 cut(s) | 56, 403, 525, 855, 981 |
| Fsp4HI | GCNGC | 9 cut(s) | 25, 293, 329, 338, 352, 462, 544, 909, 1617 |
| GlaI | GCGC | 5 cut(s) | 380, 547, 599, 735, 1134 |
| GluI | GCNGC | 9 cut(s) | 25, 293, 329, 338, 352, 462, 544, 909, 1617 |
| GsaI | CCCAGC | 2 cut(s) | 52, 143 |
| GsuI | CTGGAG | 1 cut(s) | 626 |
| HaeIII | GGCC | 7 cut(s) | 54, 144, 309, 371, 1211, 1400, 1593 |
| HapII | CCGG | 6 cut(s) | 41, 59, 145, 179, 240, 412 |
| HgaI | GACGC | 3 cut(s) | 16, 212, 284 |
| HhaI | GCGC | 5 cut(s) | 381, 548, 600, 736, 1135 |
| Hin1I | GRCGYC | 2 cut(s) | 27, 204 |
| Hin1II | CATG | 4 cut(s) | 427, 448, 730, 1337 |
| Hin6I | GCGC | 5 cut(s) | 379, 546, 598, 734, 1133 |
| HinP1I | GCGC | 5 cut(s) | 379, 546, 598, 734, 1133 |
| HincII | GTYRAC | 2 cut(s) | 277, 442 |
| HindII | GTYRAC | 2 cut(s) | 277, 442 |
| HindIII | AAGCTT | 1 cut(s) | 1653 |
| HinfI | GANTC | 6 cut(s) | 62, 230, 257, 579, 1123, 1189 |
| HpaII | CCGG | 6 cut(s) | 41, 59, 145, 179, 240, 412 |
| HphI | GGTGA | 2 cut(s) | 338, 1483 |
| Hpy166II | GTNNAC | 5 cut(s) | 277, 442, 748, 835, 1432 |
| Hpy188I | TCNGA | 7 cut(s) | 133, 202, 300, 1086, 1128, 1194, 1392 |
| Hpy188III | TCNNGA | 7 cut(s) | 486, 518, 553, 616, 718, 848, 1319 |
| Hpy8I | GTNNAC | 5 cut(s) | 277, 442, 748, 835, 1432 |
| Hpy99I | CGWCG | 5 cut(s) | 206, 230, 278, 281, 359 |
| HpyCH4III | ACNGT | 3 cut(s) | 571, 694, 1052 |
| HpyCH4IV | ACGT | 2 cut(s) | 105, 513 |
| HpyCH4V | TGCA | 6 cut(s) | 674, 992, 1070, 1256, 1601, 1619 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 334, 337, 823, 1019, 1208, 1268, 1573 |
| HpyF3I | CTNAG | 8 cut(s) | 387, 519, 813, 846, 933, 1191, 1485, 1584 |
| HpySE526I | ACGT | 2 cut(s) | 105, 513 |
| Hsp92I | GRCGYC | 2 cut(s) | 27, 204 |
| Hsp92II | CATG | 4 cut(s) | 427, 448, 730, 1337 |
| HspAI | GCGC | 5 cut(s) | 379, 546, 598, 734, 1133 |
| Ksp22I | TGATCA | 1 cut(s) | 1321 |
| Kzo9I | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| LmnI | GCTCC | 5 cut(s) | 134, 345, 607, 850, 976 |
| Lsp1109I | GCAGC | 5 cut(s) | 340, 349, 448, 895, 1603 |
| LweI | GCATC | 1 cut(s) | 1510 |
| MaeII | ACGT | 2 cut(s) | 105, 513 |
| MaeIII | GTNAC | 4 cut(s) | 242, 407, 637, 964 |
| MalI | GATC | 9 cut(s) | 149, 433, 531, 576, 654, 713, 1149, 1323, 1479 |
| MbiI | CCGCTC | 2 cut(s) | 129, 610 |
| MboI | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| MboII | GAAGA | 4 cut(s) | 202, 601, 622, 692 |
| MflI | RGATCY | 3 cut(s) | 431, 529, 1477 |
| MhlI | GDGCHC | 5 cut(s) | 56, 403, 525, 855, 981 |
| MlsI | TGGCCA | 2 cut(s) | 1211, 1593 |
| MluCI | AATT | 6 cut(s) | 302, 880, 925, 1142, 1181, 1413 |
| MluNI | TGGCCA | 2 cut(s) | 1211, 1593 |
| MlyI | GAGTC | 4 cut(s) | 239, 251, 1117, 1183 |
| MmeI | TCCRAC | 4 cut(s) | 114, 225, 246, 757 |
| Mox20I | TGGCCA | 2 cut(s) | 1211, 1593 |
| MscI | TGGCCA | 2 cut(s) | 1211, 1593 |
| MseI | TTAA | 5 cut(s) | 918, 1101, 1221, 1386, 1657 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1317 |
| Msp20I | TGGCCA | 2 cut(s) | 1211, 1593 |
| MspCI | CTTAAG | 1 cut(s) | 1220 |
| MspI | CCGG | 6 cut(s) | 41, 59, 145, 179, 240, 412 |
| MspR9I | CCNGG | 4 cut(s) | 41, 179, 240, 1397 |
| Mva1269I | GAATGC | 1 cut(s) | 1135 |
| MvaI | CCWGG | 1 cut(s) | 1397 |
| MvnI | CGCG | 3 cut(s) | 295, 354, 381 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 334, 337, 823, 1019, 1208, 1268, 1573 |
| NciI | CCSGG | 3 cut(s) | 41, 179, 240 |
| NdeII | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| NlaIII | CATG | 4 cut(s) | 427, 448, 730, 1337 |
| NmeAIII | GCCGAG | 1 cut(s) | 762 |
| NmuCI | GTSAC | 3 cut(s) | 407, 637, 964 |
| NspI | RCATGY | 1 cut(s) | 448 |
| NspV | TTCGAA | 1 cut(s) | 15 |
| PaeR7I | CTCGAG | 1 cut(s) | 551 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 12, 210, 252, 363, 716 |
| PctI | GAATGC | 1 cut(s) | 1135 |
| PfeI | GAWTC | 2 cut(s) | 62, 579 |
| PflFI | GACNNNGTC | 1 cut(s) | 206 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1407 |
| PkrI | GCNGC | 9 cut(s) | 26, 294, 330, 339, 353, 463, 545, 910, 1618 |
| PleI | GAGTC | 4 cut(s) | 238, 251, 1117, 1183 |
| PpsI | GAGTC | 4 cut(s) | 238, 251, 1117, 1183 |
| PshBI | ATTAAT | 1 cut(s) | 1386 |
| Psp6I | CCWGG | 1 cut(s) | 1395 |
| PspFI | CCCAGC | 2 cut(s) | 48, 139 |
| PspGI | CCWGG | 1 cut(s) | 1395 |
| PspOMI | GGGCCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 7 cut(s) | 52, 53, 142, 159, 186, 308, 832 |
| PsuI | RGATCY | 3 cut(s) | 431, 529, 1477 |
| PsyI | GACNNNGTC | 1 cut(s) | 206 |
| RsaI | GTAC | 2 cut(s) | 1031, 1467 |
| RsaNI | GTAC | 2 cut(s) | 1030, 1466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1317 |
| SalI | GTCGAC | 1 cut(s) | 275 |
| SaqAI | TTAA | 5 cut(s) | 918, 1101, 1221, 1386, 1657 |
| SatI | GCNGC | 9 cut(s) | 25, 293, 329, 338, 352, 462, 544, 909, 1617 |
| Sau3AI | GATC | 9 cut(s) | 147, 431, 529, 574, 652, 711, 1147, 1321, 1477 |
| Sau96I | GGNCC | 7 cut(s) | 52, 53, 142, 159, 186, 308, 832 |
| SchI | GAGTC | 4 cut(s) | 239, 251, 1117, 1183 |
| ScrFI | CCNGG | 4 cut(s) | 41, 179, 240, 1397 |
| SduI | GDGCHC | 5 cut(s) | 56, 403, 525, 855, 981 |
| SfaNI | GCATC | 1 cut(s) | 1510 |
| Sfr274I | CTCGAG | 1 cut(s) | 551 |
| SfuI | TTCGAA | 1 cut(s) | 15 |
| SgrDI | CGTCGACG | 1 cut(s) | 275 |
| SinI | GGWCC | 3 cut(s) | 159, 186, 832 |
| SlaI | CTCGAG | 1 cut(s) | 551 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1317 |
| SmlI | CTYRAG | 3 cut(s) | 551, 1220, 1650 |
| SmoI | CTYRAG | 3 cut(s) | 551, 1220, 1650 |
| Sse9I | AATT | 6 cut(s) | 302, 880, 925, 1142, 1181, 1413 |
| SspI | AATATT | 2 cut(s) | 1157, 1612 |
| StyD4I | CCNGG | 4 cut(s) | 39, 177, 238, 1395 |
| StyI | CCWWGG | 3 cut(s) | 867, 1365, 1594 |
| TaaI | ACNGT | 3 cut(s) | 571, 694, 1052 |
| TaiI | ACGT | 2 cut(s) | 108, 516 |
| TaqII | GACCGA | 3 cut(s) | 174, 579, 820 |
| TasI | AATT | 6 cut(s) | 302, 880, 925, 1142, 1181, 1413 |
| TatI | WGTACW | 1 cut(s) | 1465 |
| TauI | GCSGC | 4 cut(s) | 27, 295, 354, 546 |
| TfiI | GAWTC | 2 cut(s) | 62, 579 |
| Tru1I | TTAA | 5 cut(s) | 918, 1101, 1221, 1386, 1657 |
| Tru9I | TTAA | 5 cut(s) | 918, 1101, 1221, 1386, 1657 |
| TscAI | CASTG | 3 cut(s) | 652, 709, 1057 |
| TseFI | GTSAC | 3 cut(s) | 407, 637, 964 |
| TseI | GCWGC | 5 cut(s) | 328, 337, 461, 908, 1616 |
| Tsp45I | GTSAC | 3 cut(s) | 407, 637, 964 |
| TspDTI | ATGAA | 8 cut(s) | 440, 693, 882, 1011, 1155, 1301, 1301, 1457 |
| TspGWI | ACGGA | 1 cut(s) | 294 |
| TspRI | CASTG | 3 cut(s) | 652, 709, 1057 |
| Tth111I | GACNNNGTC | 1 cut(s) | 206 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1407 |
| Vha464I | CTTAAG | 1 cut(s) | 1220 |
| VpaK11BI | GGWCC | 3 cut(s) | 159, 186, 832 |
| VspI | ATTAAT | 1 cut(s) | 1386 |
| XapI | RAATTY | 3 cut(s) | 302, 925, 1142 |
| XceI | RCATGY | 1 cut(s) | 448 |
| XhoI | CTCGAG | 1 cut(s) | 551 |
| XmiI | GTMKAC | 1 cut(s) | 276 |