mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20980 AT4G20980 AT4G20980 AT4G20980 AT5G44320 |
| fragaria_vesca | FvH4_3g37950 FvH4_5g27490 |
| malus_domestica | MD05G1338100.v1.1 |
| prunus_persica | Prupe.4G048700_v2.0.a1 |
| pyrus_communis | pycom10g24520 |
| rosa_chinensis | RchiOBHm_Chr5g0048541 |
| rosa_laevigata | RLG00000034531 |
| rosa_multiflora | Rmu_sc0007341.1_g000041 |
| rosa_roxburghii | Rroxscaffold_1G00033270 |
| rosa_rugosa | Rorug05G0239400 |
| rosa_samantha | Rh5AG319100 Rh5BG329500 Rh5CG355200 Rh5DG340700 |
| rosa_wichuraiana | Rw0G021230 Rw5G029840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 368 |
| Acc36I | ACCTGC | 1 cut(s) | 973 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1452 |
| AccBSI | CCGCTC | 2 cut(s) | 135, 655 |
| AccI | GTMKAC | 1 cut(s) | 282 |
| AccII | CGCG | 3 cut(s) | 301, 360, 387 |
| AcoI | YGGCCR | 2 cut(s) | 1254, 1636 |
| AcsI | RAATTY | 3 cut(s) | 308, 970, 1187 |
| AcuI | CTGAAG | 1 cut(s) | 1514 |
| AcyI | GRCGYC | 2 cut(s) | 27, 210 |
| AfaI | GTAC | 2 cut(s) | 1076, 1512 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 48, 311, 324, 364, 1452, 1630 |
| AflII | CTTAAG | 1 cut(s) | 1265 |
| AgsI | TTSAA | 9 cut(s) | 37, 178, 478, 661, 679, 1350, 1375, 1574, 1691 |
| AjnI | CCWGG | 1 cut(s) | 1440 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 311, 343, 536, 568 |
| Alw21I | GWGCWC | 1 cut(s) | 409 |
| Alw26I | GTCTC | 4 cut(s) | 593, 878, 1110, 1226 |
| Ama87I | CYCGRG | 2 cut(s) | 569, 596 |
| AoxI | GGCC | 7 cut(s) | 52, 148, 313, 375, 1254, 1443, 1636 |
| ApaI | GGGCCC | 1 cut(s) | 56 |
| ApeKI | GCWGC | 4 cut(s) | 334, 343, 953, 1661 |
| ApoI | RAATTY | 3 cut(s) | 308, 970, 1187 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 200, 232 |
| AseI | ATTAAT | 1 cut(s) | 1431 |
| AspLEI | GCGC | 5 cut(s) | 387, 593, 645, 781, 1180 |
| AspS9I | GGNCC | 7 cut(s) | 52, 53, 148, 165, 192, 314, 877 |
| AsuC2I | CCSGG | 2 cut(s) | 185, 246 |
| AsuHPI | GGTGA | 4 cut(s) | 344, 547, 1003, 1528 |
| AsuII | TTCGAA | 1 cut(s) | 15 |
| AvaI | CYCGRG | 2 cut(s) | 569, 596 |
| AvaII | GGWCC | 3 cut(s) | 165, 192, 877 |
| BaeGI | GKGCMC | 1 cut(s) | 56 |
| BalI | TGGCCA | 2 cut(s) | 1256, 1638 |
| BamHI | GGATCC | 1 cut(s) | 1522 |
| BanII | GRGCYC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| BauI | CACGAG | 2 cut(s) | 881, 1362 |
| BbsI | GAAGAC | 2 cut(s) | 208, 732 |
| Bbv12I | GWGCWC | 1 cut(s) | 409 |
| BbvI | GCAGC | 4 cut(s) | 346, 355, 940, 1648 |
| BccI | CCATC | 3 cut(s) | 992, 1534, 1628 |
| BceAI | ACGGC | 6 cut(s) | 61, 197, 396, 444, 455, 868 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1037, 1071 |
| BciT130I | CCWGG | 1 cut(s) | 1442 |
| BclI | TGATCA | 1 cut(s) | 1366 |
| BcnI | CCSGG | 2 cut(s) | 185, 246 |
| BcoDI | GTCTC | 4 cut(s) | 593, 878, 1110, 1226 |
| BfrI | CTTAAG | 1 cut(s) | 1265 |
| BfuAI | ACCTGC | 1 cut(s) | 973 |
| Bme1390I | CCNGG | 3 cut(s) | 185, 246, 1442 |
| Bme18I | GGWCC | 3 cut(s) | 165, 192, 877 |
| BmeT110I | CYCGRG | 2 cut(s) | 569, 596 |
| BmgT120I | GGNCC | 7 cut(s) | 52, 53, 148, 165, 192, 314, 877 |
| BmrFI | CCNGG | 3 cut(s) | 185, 246, 1442 |
| BmsI | GCATC | 1 cut(s) | 1555 |
| BpiI | GAAGAC | 2 cut(s) | 208, 732 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1406, 1438 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| Bpu10I | CCTNAGC | 1 cut(s) | 564 |
| Bpu14I | TTCGAA | 1 cut(s) | 15 |
| BpuEI | CTTGAG | 1 cut(s) | 1680 |
| BpuMI | CCSGG | 2 cut(s) | 185, 246 |
| BsaHI | GRCGYC | 2 cut(s) | 27, 210 |
| BsaI | GGTCTC | 2 cut(s) | 593, 878 |
| BsaJI | CCNNGG | 6 cut(s) | 244, 570, 782, 912, 1410, 1639 |
| BsaWI | WCCGGW | 1 cut(s) | 58 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1490, 1520 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 48, 311, 324, 364, 1452, 1630 |
| Bse118I | RCCGGY | 1 cut(s) | 417 |
| Bse1I | ACTGG | 4 cut(s) | 167, 701, 1446, 1518 |
| BseBI | CCWGG | 1 cut(s) | 1442 |
| BseDI | CCNNGG | 6 cut(s) | 244, 570, 782, 912, 1410, 1639 |
| BseGI | GGATG | 2 cut(s) | 1357, 1639 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 48, 311, 324, 364, 1452, 1630 |
| BseMII | CTCAG | 7 cut(s) | 384, 555, 872, 905, 992, 1250, 1620 |
| BseNI | ACTGG | 4 cut(s) | 167, 701, 1446, 1518 |
| BseRI | GAGGAG | 3 cut(s) | 380, 569, 1034 |
| BseSI | GKGCMC | 1 cut(s) | 56 |
| BseXI | GCAGC | 4 cut(s) | 346, 355, 940, 1648 |
| BseYI | CCCAGC | 2 cut(s) | 48, 145 |
| BsgI | GTGCAG | 2 cut(s) | 1284, 1665 |
| Bsh1236I | CGCG | 3 cut(s) | 301, 360, 387 |
| BshFI | GGCC | 7 cut(s) | 54, 150, 315, 377, 1256, 1445, 1638 |
| BsiHKAI | GWGCWC | 1 cut(s) | 409 |
| BsiHKCI | CYCGRG | 2 cut(s) | 569, 596 |
| BsiSI | CCGG | 6 cut(s) | 59, 151, 185, 246, 418, 500 |
| BslFI | GGGAC | 4 cut(s) | 14, 98, 545, 815 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 48, 311, 324, 364, 1452, 1630 |
| BsmAI | GTCTC | 4 cut(s) | 593, 878, 1110, 1226 |
| BsmFI | GGGAC | 4 cut(s) | 14, 98, 545, 815 |
| BsmI | GAATGC | 1 cut(s) | 1180 |
| BsnI | GGCC | 7 cut(s) | 54, 150, 315, 377, 1256, 1445, 1638 |
| Bso31I | GGTCTC | 2 cut(s) | 593, 878 |
| BsoBI | CYCGRG | 2 cut(s) | 569, 596 |
| Bsp119I | TTCGAA | 1 cut(s) | 15 |
| Bsp120I | GGGCCC | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| BspANI | GGCC | 7 cut(s) | 54, 150, 315, 377, 1256, 1445, 1638 |
| BspCNI | CTCAG | 7 cut(s) | 385, 556, 871, 904, 991, 1249, 1621 |
| BspFNI | CGCG | 3 cut(s) | 301, 360, 387 |
| BspMI | ACCTGC | 1 cut(s) | 973 |
| BspT104I | TTCGAA | 1 cut(s) | 15 |
| BspTI | CTTAAG | 1 cut(s) | 1265 |
| BspTNI | GGTCTC | 2 cut(s) | 593, 878 |
| BsrBI | CCGCTC | 2 cut(s) | 135, 655 |
| BsrFI | RCCGGY | 1 cut(s) | 417 |
| BsrI | ACTGG | 4 cut(s) | 167, 701, 1446, 1518 |
| BssAI | RCCGGY | 1 cut(s) | 417 |
| BssECI | CCNNGG | 6 cut(s) | 244, 570, 782, 912, 1410, 1639 |
| BssNI | GRCGYC | 2 cut(s) | 27, 210 |
| BssSI | CACGAG | 2 cut(s) | 881, 1362 |
| BssT1I | CCWWGG | 3 cut(s) | 912, 1410, 1639 |
| Bst2BI | CACGAG | 2 cut(s) | 881, 1362 |
| Bst2UI | CCWGG | 1 cut(s) | 1442 |
| Bst4CI | ACNGT | 4 cut(s) | 559, 616, 739, 1097 |
| Bst6I | CTCTTC | 1 cut(s) | 587 |
| BstACI | GRCGYC | 2 cut(s) | 27, 210 |
| BstAFI | CTTAAG | 1 cut(s) | 1265 |
| BstBI | TTCGAA | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 2 cut(s) | 409, 647 |
| BstDEI | CTNAG | 8 cut(s) | 393, 564, 858, 891, 978, 1236, 1530, 1629 |
| BstEII | GGTNACC | 1 cut(s) | 1009 |
| BstF5I | GGATG | 2 cut(s) | 1357, 1639 |
| BstFNI | CGCG | 3 cut(s) | 301, 360, 387 |
| BstHHI | GCGC | 5 cut(s) | 387, 593, 645, 781, 1180 |
| BstMAI | GTCTC | 4 cut(s) | 593, 878, 1110, 1226 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 340, 343, 868, 1064, 1253, 1313, 1618 |
| BstNI | CCWGG | 1 cut(s) | 1442 |
| BstNSI | RCATGY | 2 cut(s) | 454, 514 |
| BstPI | GGTNACC | 1 cut(s) | 1009 |
| BstSCI | CCNGG | 3 cut(s) | 183, 244, 1440 |
| BstSLI | GKGCMC | 1 cut(s) | 56 |
| BstUI | CGCG | 3 cut(s) | 301, 360, 387 |
| BstV1I | GCAGC | 4 cut(s) | 346, 355, 940, 1648 |
| BstV2I | GAAGAC | 2 cut(s) | 208, 732 |
| BstX2I | RGATCY | 4 cut(s) | 437, 522, 574, 1522 |
| BstYI | RGATCY | 4 cut(s) | 437, 522, 574, 1522 |
| BsuRI | GGCC | 7 cut(s) | 54, 150, 315, 377, 1256, 1445, 1638 |
| BtsCI | GGATG | 2 cut(s) | 1357, 1639 |
| BtsIMutI | CAGTG | 3 cut(s) | 690, 747, 1102 |
| BveI | ACCTGC | 1 cut(s) | 973 |
| Cac8I | GCNNGC | 2 cut(s) | 409, 647 |
| CfoI | GCGC | 5 cut(s) | 387, 593, 645, 781, 1180 |
| Cfr10I | RCCGGY | 1 cut(s) | 417 |
| Cfr13I | GGNCC | 7 cut(s) | 52, 53, 148, 165, 192, 314, 877 |
| CseI | GACGC | 3 cut(s) | 16, 218, 290 |
| Csp6I | GTAC | 2 cut(s) | 1075, 1511 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1653, 1688 |
| CviAII | CATG | 5 cut(s) | 430, 451, 511, 772, 1379 |
| CviQI | GTAC | 2 cut(s) | 1075, 1511 |
| DdeI | CTNAG | 8 cut(s) | 393, 564, 858, 891, 978, 1236, 1530, 1629 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 368 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 368 |
| EaeI | YGGCCR | 2 cut(s) | 1254, 1636 |
| Eam1104I | CTCTTC | 1 cut(s) | 587 |
| EarI | CTCTTC | 1 cut(s) | 587 |
| EciI | GGCGGA | 2 cut(s) | 55, 263 |
| Ecl136II | GAGCTC | 1 cut(s) | 407 |
| Eco130I | CCWWGG | 3 cut(s) | 912, 1410, 1639 |
| Eco24I | GRGCYC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| Eco31I | GGTCTC | 2 cut(s) | 593, 878 |
| Eco32I | GATATC | 2 cut(s) | 493, 922 |
| Eco47I | GGWCC | 3 cut(s) | 165, 192, 877 |
| Eco53kI | GAGCTC | 1 cut(s) | 407 |
| Eco57I | CTGAAG | 1 cut(s) | 1514 |
| Eco88I | CYCGRG | 2 cut(s) | 569, 596 |
| Eco91I | GGTNACC | 1 cut(s) | 1009 |
| EcoICRI | GAGCTC | 1 cut(s) | 407 |
| EcoO109I | RGGNCCY | 1 cut(s) | 52 |
| EcoO65I | GGTNACC | 1 cut(s) | 1009 |
| EcoRII | CCWGG | 1 cut(s) | 1440 |
| EcoRV | GATATC | 2 cut(s) | 493, 922 |
| EcoT14I | CCWWGG | 3 cut(s) | 912, 1410, 1639 |
| EcoT38I | GRGCYC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| ErhI | CCWWGG | 3 cut(s) | 912, 1410, 1639 |
| FaeI | CATG | 5 cut(s) | 433, 454, 514, 775, 1382 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 821, 853, 998, 1030 |
| FaqI | GGGAC | 4 cut(s) | 14, 98, 545, 815 |
| FatI | CATG | 5 cut(s) | 429, 450, 510, 771, 1378 |
| FauI | CCCGC | 3 cut(s) | 140, 176, 464 |
| FbaI | TGATCA | 1 cut(s) | 1366 |
| FblI | GTMKAC | 1 cut(s) | 282 |
| FokI | GGATG | 2 cut(s) | 1344, 1646 |
| FriOI | GRGCYC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| GlaI | GCGC | 5 cut(s) | 386, 592, 644, 780, 1179 |
| GsaI | CCCAGC | 2 cut(s) | 52, 149 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeIII | GGCC | 7 cut(s) | 54, 150, 315, 377, 1256, 1445, 1638 |
| HapII | CCGG | 6 cut(s) | 59, 151, 185, 246, 418, 500 |
| HgaI | GACGC | 3 cut(s) | 16, 218, 290 |
| HhaI | GCGC | 5 cut(s) | 387, 593, 645, 781, 1180 |
| Hin1I | GRCGYC | 2 cut(s) | 27, 210 |
| Hin1II | CATG | 5 cut(s) | 433, 454, 514, 775, 1382 |
| Hin6I | GCGC | 5 cut(s) | 385, 591, 643, 779, 1178 |
| HinP1I | GCGC | 5 cut(s) | 385, 591, 643, 779, 1178 |
| HincII | GTYRAC | 3 cut(s) | 283, 448, 1147 |
| HindII | GTYRAC | 3 cut(s) | 283, 448, 1147 |
| HindIII | AAGCTT | 1 cut(s) | 1698 |
| HinfI | GANTC | 6 cut(s) | 62, 236, 263, 624, 1168, 1234 |
| HpaI | GTTAAC | 1 cut(s) | 1147 |
| HpaII | CCGG | 6 cut(s) | 59, 151, 185, 246, 418, 500 |
| HphI | GGTGA | 4 cut(s) | 344, 547, 1003, 1528 |
| Hpy166II | GTNNAC | 6 cut(s) | 283, 448, 793, 880, 1147, 1477 |
| Hpy188I | TCNGA | 8 cut(s) | 139, 208, 306, 522, 1131, 1173, 1239, 1437 |
| Hpy188III | TCNNGA | 6 cut(s) | 532, 598, 661, 763, 893, 1364 |
| Hpy8I | GTNNAC | 6 cut(s) | 283, 448, 793, 880, 1147, 1477 |
| Hpy99I | CGWCG | 7 cut(s) | 47, 212, 236, 284, 287, 365, 487 |
| HpyCH4III | ACNGT | 4 cut(s) | 559, 616, 739, 1097 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 6 cut(s) | 719, 1037, 1115, 1301, 1646, 1664 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 340, 343, 868, 1064, 1253, 1313, 1618 |
| HpyF3I | CTNAG | 8 cut(s) | 393, 564, 858, 891, 978, 1236, 1530, 1629 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92I | GRCGYC | 2 cut(s) | 27, 210 |
| Hsp92II | CATG | 5 cut(s) | 433, 454, 514, 775, 1382 |
| HspAI | GCGC | 5 cut(s) | 385, 591, 643, 779, 1178 |
| Ksp22I | TGATCA | 1 cut(s) | 1366 |
| KspAI | GTTAAC | 1 cut(s) | 1147 |
| LmnI | GCTCC | 5 cut(s) | 140, 351, 652, 895, 1021 |
| Lsp1109I | GCAGC | 4 cut(s) | 346, 355, 940, 1648 |
| LweI | GCATC | 1 cut(s) | 1555 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MaeIII | GTNAC | 5 cut(s) | 248, 413, 682, 848, 1009 |
| MbiI | CCGCTC | 2 cut(s) | 135, 655 |
| MboII | GAAGA | 5 cut(s) | 208, 574, 646, 667, 737 |
| MflI | RGATCY | 4 cut(s) | 437, 522, 574, 1522 |
| MhlI | GDGCHC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| MlsI | TGGCCA | 2 cut(s) | 1256, 1638 |
| MluCI | AATT | 6 cut(s) | 308, 925, 970, 1187, 1226, 1458 |
| MluNI | TGGCCA | 2 cut(s) | 1256, 1638 |
| MlyI | GAGTC | 4 cut(s) | 245, 257, 1162, 1228 |
| MmeI | TCCRAC | 4 cut(s) | 120, 231, 252, 802 |
| Mox20I | TGGCCA | 2 cut(s) | 1256, 1638 |
| MscI | TGGCCA | 2 cut(s) | 1256, 1638 |
| MseI | TTAA | 5 cut(s) | 963, 1146, 1266, 1431, 1702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1362 |
| Msp20I | TGGCCA | 2 cut(s) | 1256, 1638 |
| MspCI | CTTAAG | 1 cut(s) | 1265 |
| MspI | CCGG | 6 cut(s) | 59, 151, 185, 246, 418, 500 |
| MspR9I | CCNGG | 3 cut(s) | 185, 246, 1442 |
| Mva1269I | GAATGC | 1 cut(s) | 1180 |
| MvaI | CCWGG | 1 cut(s) | 1442 |
| MvnI | CGCG | 3 cut(s) | 301, 360, 387 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 340, 343, 868, 1064, 1253, 1313, 1618 |
| NciI | CCSGG | 2 cut(s) | 185, 246 |
| NlaIII | CATG | 5 cut(s) | 433, 454, 514, 775, 1382 |
| NmeAIII | GCCGAG | 1 cut(s) | 807 |
| NmuCI | GTSAC | 4 cut(s) | 413, 682, 848, 1009 |
| NspI | RCATGY | 2 cut(s) | 454, 514 |
| NspV | TTCGAA | 1 cut(s) | 15 |
| PaeR7I | CTCGAG | 1 cut(s) | 596 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 12, 216, 258, 369, 761 |
| PctI | GAATGC | 1 cut(s) | 1180 |
| PfeI | GAWTC | 2 cut(s) | 62, 624 |
| PflFI | GACNNNGTC | 1 cut(s) | 212 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1452 |
| PleI | GAGTC | 4 cut(s) | 244, 257, 1162, 1228 |
| PpsI | GAGTC | 4 cut(s) | 244, 257, 1162, 1228 |
| PshBI | ATTAAT | 1 cut(s) | 1431 |
| Psp124BI | GAGCTC | 1 cut(s) | 409 |
| Psp6I | CCWGG | 1 cut(s) | 1440 |
| PspEI | GGTNACC | 1 cut(s) | 1009 |
| PspFI | CCCAGC | 2 cut(s) | 48, 145 |
| PspGI | CCWGG | 1 cut(s) | 1440 |
| PspOMI | GGGCCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 7 cut(s) | 52, 53, 148, 165, 192, 314, 877 |
| PsuI | RGATCY | 4 cut(s) | 437, 522, 574, 1522 |
| PsyI | GACNNNGTC | 1 cut(s) | 212 |
| RsaI | GTAC | 2 cut(s) | 1076, 1512 |
| RsaNI | GTAC | 2 cut(s) | 1075, 1511 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1362 |
| SacI | GAGCTC | 1 cut(s) | 409 |
| SalI | GTCGAC | 1 cut(s) | 281 |
| SaqAI | TTAA | 5 cut(s) | 963, 1146, 1266, 1431, 1702 |
| Sau96I | GGNCC | 7 cut(s) | 52, 53, 148, 165, 192, 314, 877 |
| SchI | GAGTC | 4 cut(s) | 245, 257, 1162, 1228 |
| ScrFI | CCNGG | 3 cut(s) | 185, 246, 1442 |
| SduI | GDGCHC | 5 cut(s) | 56, 409, 570, 900, 1026 |
| SfaNI | GCATC | 1 cut(s) | 1555 |
| Sfr274I | CTCGAG | 1 cut(s) | 596 |
| SfuI | TTCGAA | 1 cut(s) | 15 |
| SgrDI | CGTCGACG | 1 cut(s) | 281 |
| SinI | GGWCC | 3 cut(s) | 165, 192, 877 |
| SlaI | CTCGAG | 1 cut(s) | 596 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1362 |
| SmlI | CTYRAG | 3 cut(s) | 596, 1265, 1695 |
| SmoI | CTYRAG | 3 cut(s) | 596, 1265, 1695 |
| Sse9I | AATT | 6 cut(s) | 308, 925, 970, 1187, 1226, 1458 |
| SspI | AATATT | 2 cut(s) | 1202, 1657 |
| SstI | GAGCTC | 1 cut(s) | 409 |
| StyD4I | CCNGG | 3 cut(s) | 183, 244, 1440 |
| StyI | CCWWGG | 3 cut(s) | 912, 1410, 1639 |
| TaaI | ACNGT | 4 cut(s) | 559, 616, 739, 1097 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqII | GACCGA | 3 cut(s) | 180, 624, 865 |
| TasI | AATT | 6 cut(s) | 308, 925, 970, 1187, 1226, 1458 |
| TatI | WGTACW | 1 cut(s) | 1510 |
| TauI | GCSGC | 6 cut(s) | 27, 298, 301, 360, 470, 591 |
| TfiI | GAWTC | 2 cut(s) | 62, 624 |
| Tru1I | TTAA | 5 cut(s) | 963, 1146, 1266, 1431, 1702 |
| Tru9I | TTAA | 5 cut(s) | 963, 1146, 1266, 1431, 1702 |
| TscAI | CASTG | 3 cut(s) | 697, 754, 1102 |
| TseFI | GTSAC | 4 cut(s) | 413, 682, 848, 1009 |
| TseI | GCWGC | 4 cut(s) | 334, 343, 953, 1661 |
| Tsp45I | GTSAC | 4 cut(s) | 413, 682, 848, 1009 |
| TspDTI | ATGAA | 8 cut(s) | 446, 738, 927, 1056, 1200, 1346, 1346, 1502 |
| TspGWI | ACGGA | 1 cut(s) | 300 |
| TspRI | CASTG | 3 cut(s) | 697, 754, 1102 |
| Tth111I | GACNNNGTC | 1 cut(s) | 212 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1452 |
| Vha464I | CTTAAG | 1 cut(s) | 1265 |
| VpaK11BI | GGWCC | 3 cut(s) | 165, 192, 877 |
| VspI | ATTAAT | 1 cut(s) | 1431 |
| XapI | RAATTY | 3 cut(s) | 308, 970, 1187 |
| XceI | RCATGY | 2 cut(s) | 454, 514 |
| XhoI | CTCGAG | 1 cut(s) | 596 |
| XmiI | GTMKAC | 1 cut(s) | 282 |