Rorug05G0239400

mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010260
Physical Location & Seq
Forward (+)
25348524 .. 25348712
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0239400.1

Sequence Viewer

Length: 189 bp
ATGGTGAATGCATGGGCAATTGGAAGAGATCCCAAGTCATACACAAACGCCGAGCAGTATGAGCCAGAAAGATTTTTAAACAATACTATAGATTATAAAGGGAATGACTTCGAATTAATTCCATTTGGTTCTGGTAAACGAGGATGCCCAGAGTCCAATTTGCCATTGCTATGTTTGCCATTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005852 GO:0005911 GO:0006412 GO:0006413 GO:0006464 GO:0006470 GO:0006518 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006913 GO:0007154 GO:0007165 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009639 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010019 GO:0010035 GO:0010038 GO:0010380 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019538 GO:0023052 GO:0030054 GO:0030176 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0042175 GO:0042221 GO:0042578 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046686 GO:0046906 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051193 GO:0051195 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071704 GO:0090056 GO:0097159 GO:0098827 GO:0104004 GO:0140096 GO:1901363 GO:1901401 GO:1901402 GO:1901463 GO:1901464 GO:1901564 GO:1901566 GO:1901576 GO:1902325
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-3_zeta

Protein Analysis

62

Amino Acids

7.02

Weight (kDa)

4.81

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 50 6.5e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010260)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20980 AT4G20980 AT4G20980 AT4G20980 AT5G44320
fragaria_vesca FvH4_3g37950 FvH4_5g27490
malus_domestica MD05G1338100.v1.1
prunus_persica Prupe.4G048700_v2.0.a1
pyrus_communis pycom10g24520
rosa_chinensis RchiOBHm_Chr5g0048541
rosa_laevigata RLG00000034531
rosa_multiflora Rmu_sc0007341.1_g000041
rosa_roxburghii Rroxscaffold_1G00033270
rosa_rugosa Rorug05G0239400
rosa_samantha Rh5AG319100 Rh5BG329500 Rh5CG355200 Rh5DG340700
rosa_wichuraiana Rw0G021230 Rw5G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AclWI GGATC 1 cut(s) 23
AlwI GGATC 1 cut(s) 23
AseI ATTAAT 1 cut(s) 116
Asp700I GAANNNNTTC 2 cut(s) 107, 117
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 87
BmsI GCATC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 111
Bse3DI GCAATG 2 cut(s) 164, 179
BseGI GGATG 1 cut(s) 149
BseMI GCAATG 2 cut(s) 164, 179
BsmI GAATGC 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 28
BspPI GGATC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 111
BsrDI GCAATG 2 cut(s) 164, 179
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 111
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 61, 175
BstSFI CTRYAG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 1 cut(s) 149
CviAII CATG 1 cut(s) 12
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DraI TTTAAA 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 13
FaeI CATG 1 cut(s) 15
FaiI YATR 7 cut(s) 13, 40, 60, 89, 96, 172, 187
FatI CATG 1 cut(s) 11
FokI GGATG 1 cut(s) 156
Hin1II CATG 1 cut(s) 15
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 175
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 78, 117, 162
LweI GCATC 1 cut(s) 134
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 36
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 18, 113, 117, 157
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 13
MroXI GAANNNNTTC 2 cut(s) 107, 117
MseI TTAA 2 cut(s) 77, 116
MslI CAYNNNNRTG 2 cut(s) 169, 184
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 61, 175
NdeII GATC 1 cut(s) 28
NlaIII CATG 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 13
NspV TTCGAA 1 cut(s) 111
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 2 cut(s) 107, 117
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 116
PsiI TTATAA 1 cut(s) 96
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 169, 184
SaqAI TTAA 2 cut(s) 77, 116
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 1 cut(s) 161
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 111
SgeI CNNG 7 cut(s) 24, 46, 64, 77, 144, 152, 161
SmiMI CAYNNNNRTG 2 cut(s) 169, 184
Sse9I AATT 4 cut(s) 18, 113, 117, 157
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 18, 113, 117, 157
Tru1I TTAA 2 cut(s) 77, 116
Tru9I TTAA 2 cut(s) 77, 116
VspI ATTAAT 1 cut(s) 116
XmnI GAANNNNTTC 2 cut(s) 107, 117
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.